Os01g0927600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Auxin response factor 2 (ARF1-binding protein) (ARF1-BP).
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Os01g0927600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Auxin response factor 2 (ARF1-binding protein) (ARF1-BP).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 29.57 | 0.255 | 13 | 1.3 | 0.588 | -0.156 | 0.112 | 2.14 | 0.327 | 3.07 | 15.53 | 706 | -- | -- |
| 32.5 | 0.268 | 13 | 0.928 | 0.497 | -0.328 | 0.101 | -- | 0.248 | 3.37 | 13.67 | 9555 | -- | -- |
| 29.57 | 0.253 | 13 | 1.32 | 0.586 | -0.169 | -- | 2.12 | 0.348 | 3.06 | 16.5 | 784 | -- | -- |
| 32.53 | 0.267 | 13 | 0.928 | 0.496 | -0.337 | -- | -- | 0.248 | 3.43 | 13.67 | 9555 | -- | -- |
| 41.81 | 0.303 | 13 | 1.13 | -- | -0.819 | -- | 0.587 | 0.358 | -- | 16.3 | 2492 | -- | -- |
| 33.52 | 0.271 | 13.1 | 0.866 | 0.587 | -- | 0.184 | -- | 0.202 | 3.18 | -- | -- | -- | -- |
| 33.62 | 0.272 | 13.1 | 0.862 | 0.589 | -- | -- | -- | 0.201 | 3.25 | -- | -- | -- | -- |
| 42.11 | 0.304 | 13 | 1.05 | -- | -0.88 | -- | -- | 0.334 | -- | 11.57 | 19120 | -- | -- |
| 35.9 | 0.279 | 13.1 | -- | 0.557 | 0.622 | -- | -- | -0.093 | 3.02 | 20.59 | 47520 | -- | -- |
| 53.26 | 0.341 | 13.1 | 0.887 | -- | -- | -- | -- | 0.217 | -- | -- | -- | -- | -- |
| 53.21 | 0.341 | 13.1 | -- | 0.606 | -- | -- | -- | 0.105 | 3.25 | -- | -- | -- | -- |
| 54.4 | 0.344 | 13.1 | -- | -- | 0.653 | -- | -- | -0.124 | -- | 20.7 | 47520 | -- | -- |
| 74.02 | 0.402 | 13.1 | -- | -- | -- | -- | -- | 0.118 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 28.14 | humidity | 90 | 14400 | > th | dose independent | rect. | 22 | 9 |
| 5 | 28.27 | humidity | 90 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 10 | 28.34 | humidity | 90 | 14400 | < th | dose independent | rect. | 23 | 8 |
| 12 | 28.36 | humidity | 90 | 14400 | > th | dose independent | rect. | 22 | 6 |
| 22 | 28.47 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 3 |
| 23 | 28.48 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 46 | 28.54 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 12 |
| 50 | 28.56 | humidity | 90 | 14400 | > th | dose dependent | rect. | 24 | 1 |
| 52 | 28.58 | humidity | 90 | 14400 | < th | dose independent | rect. | 2 | 5 |
| 54 | 28.59 | humidity | 90 | 14400 | < th | dose independent | rect. | 22 | 6 |
| 60 | 28.62 | humidity | 90 | 14400 | < th | dose independent | rect. | 23 | 2 |
| 80 | 28.71 | humidity | 90 | 14400 | > th | dose independent | rect. | 3 | 4 |
| 84 | 28.71 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 9 |
| 87 | 28.73 | humidity | 90 | 14400 | > th | dose dependent | rect. | 4 | 3 |
| 111 | 28.80 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 121 | 28.81 | temperature | 25 | 720 | < th | dose dependent | rect. | 18 | 17 |
| 131 | 28.82 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 133 | 28.82 | temperature | 25 | 720 | < th | dose dependent | rect. | 18 | 15 |
| 135 | 28.83 | humidity | 90 | 14400 | > th | dose independent | sin | 10 | NA |
| 141 | 28.83 | humidity | 90 | 270 | < th | dose independent | rect. | 6 | 9 |
| 181 | 28.88 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 2 |
| 187 | 28.88 | radiation | 1 | 43200 | < th | dose dependent | rect. | 5 | 11 |
| 202 | 28.90 | humidity | 80 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 203 | 28.90 | temperature | 25 | 720 | < th | dose dependent | sin | 11 | NA |
| 204 | 28.90 | radiation | 1 | 43200 | < th | dose dependent | rect. | 5 | 7 |
| 215 | 28.90 | radiation | 1 | 43200 | < th | dose dependent | rect. | 1 | 14 |
| 232 | 28.91 | radiation | 1 | 43200 | < th | dose dependent | sin | 4 | NA |
| 238 | 28.91 | radiation | 1 | 43200 | < th | dose dependent | rect. | 1 | 11 |
| 275 | 28.92 | radiation | 1 | 43200 | < th | dose dependent | rect. | 3 | 8 |
| 314 | 28.93 | radiation | 1 | 43200 | < th | dose dependent | rect. | 10 | 8 |
| 325 | 28.94 | radiation | 1 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 326 | 28.94 | radiation | 1 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 373 | 28.97 | wind | 1 | 14400 | > th | dose independent | rect. | 23 | 2 |
| 383 | 28.97 | temperature | 30 | 30 | < th | dose dependent | rect. | 4 | 9 |
| 391 | 28.98 | humidity | 80 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 395 | 28.98 | radiation | 1 | 43200 | < th | dose dependent | rect. | 14 | 4 |
| 405 | 28.99 | radiation | 1 | 43200 | < th | dose independent | rect. | 14 | 3 |
| 407 | 28.99 | radiation | 1 | 43200 | < th | dose independent | rect. | 5 | 12 |
| 417 | 29.00 | radiation | 1 | 43200 | > th | dose independent | rect. | 5 | 12 |
| 431 | 29.01 | radiation | 1 | 43200 | > th | dose independent | rect. | 14 | 3 |
| 499 | 29.02 | radiation | 1 | 43200 | < th | dose dependent | rect. | 15 | 21 |
| 521 | 29.03 | humidity | 90 | 14400 | > th | dose dependent | sin | 9 | NA |
| 523 | 29.03 | radiation | 1 | 43200 | < th | dose dependent | no | NA | NA |
| 604 | 29.04 | radiation | 1 | 43200 | < th | dose dependent | rect. | 11 | 23 |
| 608 | 29.05 | radiation | 1 | 43200 | > th | dose independent | sin | 2 | NA |
| 609 | 29.05 | radiation | 1 | 43200 | < th | dose independent | sin | 1 | NA |
| 619 | 29.05 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 18 |
| 643 | 29.05 | radiation | 1 | 43200 | < th | dose dependent | rect. | 8 | 23 |
| 657 | 29.06 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 18 |
| 710 | 29.08 | radiation | 1 | 43200 | < th | dose independent | rect. | 5 | 8 |
| 753 | 29.09 | radiation | 1 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 754 | 29.09 | radiation | 1 | 43200 | > th | dose independent | rect. | 5 | 7 |
| 823 | 29.10 | humidity | 90 | 14400 | < th | dose independent | sin | 10 | NA |
| 827 | 29.10 | radiation | 1 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 869 | 29.11 | radiation | 40 | 43200 | < th | dose independent | rect. | 16 | 10 |
| 974 | 29.13 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 12 |