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Os04g0671900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to P-167-1_1 (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.4 (0.0253) R2 : 0.647
β1 : -2.89 (0.168) R2dD : 0.978 R2D : -0.325
β2 : 0.666 (0.0535) R2dC : 0.126 R2C : 0.136
β3 : -2.04 (0.138) R2dE : 0.793 R2E : -0.467
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0792 (0.0699) R2dN8 : 0.00389 R2N8 : 0.0488
σ : 0.422
deviance : 81.99
__
_____
C
peak time of C : 23.7
E
wheather : temperature
threshold : 19
memory length : 39101
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
84.77 0.433 9.54 -3.68 0.636 -2.54 0.486 16.1 0.723 0.0522 29.81 4078 -- --
81.73 0.421 9.39 -2.92 0.654 -2.04 0.21 -- 0.0781 24 19.1 37620 -- --
85.73 0.431 9.54 -3.69 0.632 -2.55 -- 16.1 0.721 23.9 29.8 4064 -- --
81.99 0.422 9.4 -2.89 0.666 -2.04 -- -- 0.0792 23.7 19 39101 -- --
108.86 0.486 9.51 -3.72 -- -2.74 -- 16.6 0.75 -- 29.81 3809 -- --
116.89 0.507 9.22 -0.689 0.711 -- 0.445 -- 0.852 23.9 -- -- -- --
117.73 0.508 9.22 -0.706 0.709 -- -- -- 0.85 23.7 -- -- -- --
111.01 0.491 9.39 -2.88 -- -2.03 -- -- 0.0819 -- 18.99 37173 -- --
120.44 0.511 9.26 -- 0.524 -0.719 -- -- 0.727 23.4 22.3 1499 -- --
149.38 0.571 9.21 -0.686 -- -- -- -- 0.859 -- -- -- -- --
130.88 0.535 9.2 -- 0.701 -- -- -- 0.929 23.7 -- -- -- --
130.25 0.532 9.24 -- -- -0.875 -- -- 0.665 -- 25.6 894 -- --
161.78 0.594 9.19 -- -- -- -- -- 0.935 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 76.34 radiation 40 14400 > th dose dependent rect. 15 18
2 76.53 radiation 1 43200 > th dose independent rect. 18 1
12 76.69 radiation 40 14400 > th dose dependent rect. 7 2
30 77.07 radiation 1 43200 < th dose independent rect. 18 9
32 77.09 radiation 1 43200 < th dose independent rect. 18 7
34 77.10 radiation 1 43200 < th dose independent rect. 18 1
35 77.11 radiation 1 43200 < th dose independent rect. 18 3
41 77.41 radiation 1 14400 < th dose dependent rect. 24 5
42 77.64 radiation 1 43200 < th dose dependent rect. 22 7
53 78.18 radiation 1 43200 < th dose dependent rect. 4 1
58 78.62 radiation 30 14400 < th dose independent rect. 16 11
64 78.71 radiation 1 43200 < th dose dependent rect. 18 7
66 78.72 radiation 1 43200 < th dose dependent rect. 18 1
70 78.73 radiation 1 43200 < th dose dependent rect. 18 5
72 78.74 radiation 30 14400 < th dose independent rect. 16 1
77 78.87 radiation 30 14400 < th dose independent rect. 16 9
80 79.18 wind 5 43200 < th dose independent rect. 12 1
84 79.45 radiation 30 14400 < th dose independent rect. 16 7
87 79.54 humidity 90 43200 > th dose dependent rect. 5 1
88 79.57 wind 3 43200 > th dose dependent rect. 10 4
89 79.60 wind 5 43200 > th dose independent rect. 12 1
90 79.64 wind 5 43200 < th dose independent rect. 11 3
91 79.65 radiation 30 14400 > th dose independent rect. 16 16
92 79.76 wind 3 43200 > th dose dependent rect. 11 2
97 79.92 radiation 20 14400 < th dose dependent rect. 18 11
102 80.01 wind 5 43200 > th dose independent rect. 11 3
105 80.04 humidity 60 43200 < th dose independent rect. 20 16
109 80.08 wind 5 43200 > th dose independent rect. 10 5
123 80.22 humidity 90 14400 < th dose independent rect. 24 1
127 80.25 humidity 60 43200 < th dose independent rect. 24 12
133 80.40 wind 7 43200 < th dose independent rect. 5 10
140 80.47 wind 7 43200 > th dose independent rect. 3 12
148 80.54 wind 7 43200 > th dose independent rect. 7 8
165 80.61 wind 9 43200 < th dose dependent rect. 11 1
168 80.62 radiation 40 14400 < th dose dependent rect. 18 9
199 80.83 wind 1 43200 < th dose dependent rect. 23 3
213 80.92 humidity 70 43200 < th dose independent rect. 7 2
218 80.95 atmosphere 1010 43200 < th dose independent rect. 6 1
240 81.08 humidity 70 43200 < th dose independent rect. 21 12
268 81.19 temperature 20 43200 < th dose dependent rect. 2 1
275 81.22 atmosphere 1005 43200 > th dose dependent rect. 4 1
299 81.30 radiation 1 43200 < th dose dependent sin 12 NA
312 81.33 humidity 70 43200 < th dose independent rect. 5 4
314 81.33 humidity 90 43200 > th dose dependent rect. 3 14
320 81.34 humidity 90 43200 > th dose dependent rect. 4 7
324 81.36 humidity 90 43200 > th dose dependent rect. 4 5
329 81.37 humidity 90 43200 > th dose dependent rect. 3 10
401 81.48 wind 5 43200 > th dose dependent rect. 5 10
412 81.50 atmosphere 1005 43200 > th dose independent rect. 16 1
436 81.55 humidity 90 43200 > th dose dependent sin 2 NA
440 81.55 radiation 1 43200 < th dose dependent rect. 7 22
442 81.56 humidity 60 43200 < th dose dependent rect. 10 1
490 81.63 atmosphere 1010 43200 > th dose independent rect. 6 1
505 81.64 temperature 20 43200 < th dose independent rect. 6 2
519 81.66 temperature 20 43200 > th dose independent rect. 6 2
531 81.68 atmosphere 1005 43200 > th dose independent rect. 18 1
532 81.68 atmosphere 1005 43200 < th dose independent rect. 17 1
590 81.75 wind 7 43200 < th dose independent sin 3 NA
591 81.75 atmosphere 1010 43200 < th dose independent rect. 22 1
599 81.76 humidity 60 43200 > th dose independent rect. 21 14
662 81.83 radiation 1 43200 < th dose dependent rect. 7 12
702 81.86 humidity 90 43200 > th dose independent rect. 22 1
707 81.86 radiation 1 43200 < th dose dependent rect. 2 17
708 81.86 radiation 1 43200 < th dose dependent rect. 24 19
709 81.86 radiation 1 43200 < th dose dependent rect. 22 21
712 81.87 radiation 1 43200 < th dose dependent no NA NA
717 81.87 radiation 1 43200 < th dose dependent rect. 4 15
767 81.89 wind 7 43200 > th dose independent sin 3 NA
787 81.90 radiation 1 43200 < th dose dependent rect. 10 23
791 81.91 radiation 1 43200 > th dose independent rect. 18 17
817 81.92 radiation 1 43200 < th dose dependent rect. 4 7
829 81.92 radiation 1 43200 < th dose dependent rect. 22 13
854 81.94 radiation 40 14400 < th dose independent rect. 15 18
897 81.95 humidity 90 14400 < th dose independent rect. 24 3
900 81.95 radiation 1 43200 < th dose independent rect. 18 17
928 81.96 radiation 10 14400 > th dose independent rect. 5 1
995 81.99 atmosphere 1005 43200 > th dose dependent sin 8 NA