Os04g0442000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Auxin response factor 2 (ARF1-binding protein) (ARF1-BP).
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Os04g0442000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Auxin response factor 2 (ARF1-binding protein) (ARF1-BP).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 43.04 | 0.308 | 12.7 | 0.304 | 1.1 | 0.932 | 0.577 | 0.422 | 0.245 | 6.85 | 11.17 | 243 | -- | -- |
| 43.79 | 0.308 | 12.7 | 0.309 | 1.12 | 0.868 | 0.642 | -- | 0.251 | 6.52 | 12.49 | 240 | -- | -- |
| 43.86 | 0.308 | 12.7 | 0.295 | 1.09 | 0.958 | -- | 0.425 | 0.239 | 6.99 | 10 | 242 | -- | -- |
| 44.72 | 0.311 | 12.7 | 0.312 | 1.1 | 0.949 | -- | -- | 0.245 | 6.92 | 10.97 | 242 | -- | -- |
| 50.57 | 0.331 | 12.7 | 0.324 | -- | 1.82 | -- | 0.724 | 0.31 | -- | 6.536 | 575 | -- | -- |
| 51.44 | 0.336 | 12.7 | 0.29 | 1.68 | -- | 0.841 | -- | 0.215 | 4.49 | -- | -- | -- | -- |
| 53.35 | 0.342 | 12.7 | 0.284 | 1.68 | -- | -- | -- | 0.21 | 4.49 | -- | -- | -- | -- |
| 51.72 | 0.335 | 12.7 | 0.32 | -- | 1.84 | -- | -- | 0.312 | -- | 7.345 | 577 | -- | -- |
| 47.08 | 0.32 | 12.7 | -- | 1.11 | 0.964 | -- | -- | 0.216 | 7 | 10 | 243 | -- | -- |
| 205.02 | 0.669 | 12.7 | 0.35 | -- | -- | -- | -- | 0.255 | -- | -- | -- | -- | -- |
| 55.47 | 0.348 | 12.7 | -- | 1.69 | -- | -- | -- | 0.178 | 4.49 | -- | -- | -- | -- |
| 54.25 | 0.343 | 12.7 | -- | -- | 1.85 | -- | -- | 0.28 | -- | 8.788 | 575 | -- | -- |
| 208.24 | 0.674 | 12.8 | -- | -- | -- | -- | -- | 0.216 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 41.23 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 7 | 20 |
| 2 | 41.24 | radiation | 10.0 | 270 | < th | dose independent | rect. | 9 | 21 |
| 5 | 41.39 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 10 | 20 |
| 6 | 41.54 | radiation | 10.0 | 270 | < th | dose independent | rect. | 2 | 15 |
| 15 | 41.91 | radiation | 10.0 | 270 | < th | dose independent | rect. | 13 | 17 |
| 16 | 41.91 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 14 | 16 |
| 29 | 42.18 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 2 | 15 |
| 47 | 42.30 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 22 | 23 |
| 94 | 42.79 | radiation | 10.0 | 270 | < th | dose independent | rect. | 1 | 20 |
| 98 | 42.83 | radiation | 10.0 | 270 | < th | dose independent | rect. | 23 | 22 |
| 121 | 43.01 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 3 | 12 |
| 129 | 43.06 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 20 | 23 |
| 137 | 43.10 | humidity | 60.0 | 90 | > th | dose dependent | rect. | 3 | 18 |
| 143 | 43.12 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 1 | 20 |
| 168 | 43.27 | humidity | 80.0 | 30 | > th | dose independent | rect. | 4 | 17 |
| 172 | 43.29 | radiation | 20.0 | 90 | < th | dose independent | rect. | 3 | 10 |
| 176 | 43.30 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 13 | 23 |
| 191 | 43.37 | radiation | 10.0 | 270 | < th | dose dependent | sin | 3 | NA |
| 192 | 43.37 | radiation | 10.0 | 270 | < th | dose dependent | no | NA | NA |
| 198 | 43.38 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 16 | 23 |
| 235 | 43.54 | radiation | 10.0 | 270 | < th | dose independent | sin | 4 | NA |
| 269 | 43.62 | wind | 7.0 | 270 | < th | dose independent | rect. | 5 | 22 |
| 280 | 43.66 | humidity | 60.0 | 30 | > th | dose dependent | rect. | 4 | 14 |
| 328 | 43.83 | radiation | 10.0 | 270 | < th | dose independent | rect. | 13 | 23 |
| 333 | 43.86 | radiation | 10.0 | 270 | < th | dose independent | no | NA | NA |
| 338 | 43.86 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 15 | 20 |
| 341 | 43.87 | radiation | 10.0 | 270 | > th | dose independent | rect. | 14 | 22 |
| 382 | 43.96 | radiation | 1.0 | 30 | > th | dose dependent | rect. | 8 | 4 |
| 395 | 43.99 | radiation | 1.0 | 270 | > th | dose dependent | sin | 11 | NA |
| 396 | 43.99 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 3 | 12 |
| 408 | 44.02 | humidity | 70.0 | 270 | > th | dose independent | rect. | 14 | 16 |
| 430 | 44.06 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 2 |
| 432 | 44.06 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 2 |
| 435 | 44.07 | radiation | 10.0 | 270 | < th | dose independent | rect. | 16 | 23 |
| 452 | 44.10 | wind | 9.0 | 270 | < th | dose dependent | rect. | 3 | 2 |
| 459 | 44.13 | wind | 7.0 | 270 | < th | dose independent | rect. | 6 | 20 |
| 487 | 44.18 | radiation | 10.0 | 720 | < th | dose independent | rect. | 18 | 21 |
| 496 | 44.19 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 11 | 21 |
| 516 | 44.23 | radiation | 10.0 | 270 | < th | dose independent | sin | 10 | NA |
| 523 | 44.24 | temperature | 25.0 | 90 | < th | dose independent | rect. | 15 | 17 |
| 534 | 44.26 | temperature | 15.0 | 270 | > th | dose independent | rect. | 5 | 22 |
| 542 | 44.27 | radiation | 40.0 | 270 | < th | dose dependent | sin | 11 | NA |
| 549 | 44.28 | temperature | 20.0 | 270 | > th | dose independent | rect. | 6 | 19 |
| 554 | 44.29 | wind | 9.0 | 270 | < th | dose independent | rect. | 3 | 2 |
| 555 | 44.29 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 2 |
| 557 | 44.29 | temperature | 30.0 | 270 | < th | dose independent | rect. | 3 | 2 |
| 558 | 44.29 | humidity | 50.0 | 270 | > th | dose independent | rect. | 3 | 2 |
| 561 | 44.29 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 2 |
| 562 | 44.29 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 3 | 2 |
| 564 | 44.29 | radiation | 20.0 | 270 | < th | dose independent | rect. | 3 | 2 |
| 567 | 44.29 | temperature | 20.0 | 90 | > th | dose independent | rect. | 8 | 19 |
| 572 | 44.30 | radiation | 1.0 | 270 | < th | dose independent | rect. | 3 | 2 |
| 574 | 44.30 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 3 | 2 |
| 582 | 44.31 | temperature | 30.0 | 270 | < th | dose independent | rect. | 16 | 14 |
| 583 | 44.31 | radiation | 40.0 | 90 | < th | dose dependent | sin | 5 | NA |
| 617 | 44.35 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 3 | 2 |
| 641 | 44.38 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 16 | 18 |
| 643 | 44.39 | temperature | 15.0 | 270 | > th | dose independent | rect. | 10 | 11 |
| 682 | 44.43 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 3 | 2 |
| 705 | 44.47 | wind | 7.0 | 90 | < th | dose independent | rect. | 8 | 19 |
| 710 | 44.48 | radiation | 20.0 | 30 | > th | dose independent | rect. | 8 | 4 |
| 723 | 44.50 | wind | 9.0 | 90 | < th | dose dependent | rect. | 3 | 5 |
| 732 | 44.51 | wind | 7.0 | 270 | < th | dose independent | rect. | 21 | 13 |
| 753 | 44.54 | radiation | 10.0 | 90 | > th | dose dependent | sin | 8 | NA |
| 783 | 44.57 | temperature | 10.0 | 270 | > th | dose independent | rect. | 21 | 13 |
| 784 | 44.57 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 21 | 13 |
| 791 | 44.57 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 12 | 20 |
| 809 | 44.60 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 2 | 4 |
| 813 | 44.60 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 8 | 19 |
| 814 | 44.60 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 2 | 4 |
| 818 | 44.60 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 11 | 19 |
| 819 | 44.60 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 8 | 19 |
| 835 | 44.62 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 3 | 5 |
| 842 | 44.63 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 2 | 4 |
| 865 | 44.64 | radiation | 1.0 | 90 | > th | dose dependent | rect. | 13 | 23 |
| 868 | 44.65 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 2 | 4 |
| 898 | 44.68 | radiation | 20.0 | 90 | < th | dose independent | rect. | 3 | 5 |
| 906 | 44.68 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 5 | 22 |
| 912 | 44.68 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 5 | 22 |
| 924 | 44.70 | humidity | 70.0 | 90 | > th | dose independent | rect. | 3 | 5 |
| 936 | 44.71 | humidity | 50.0 | 270 | > th | dose independent | rect. | 21 | 13 |
| 963 | 44.74 | wind | 7.0 | 90 | < th | dose independent | rect. | 3 | 5 |
| 965 | 44.74 | temperature | 10.0 | 90 | > th | dose independent | rect. | 3 | 5 |
| 967 | 44.74 | temperature | 30.0 | 90 | < th | dose independent | rect. | 3 | 5 |
| 968 | 44.74 | humidity | 50.0 | 90 | > th | dose independent | rect. | 3 | 5 |
| 970 | 44.74 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 3 | 5 |
| 975 | 44.74 | temperature | 10.0 | 90 | > th | dose independent | rect. | 8 | 19 |
| 977 | 44.74 | humidity | 60.0 | 30 | > th | dose dependent | sin | 2 | NA |