BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0556400 Os01g0556400|J023087C04
(380 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0556400 Heat shock protein DnaJ family protein 598 e-171
Os05g0364500 Similar to Chaperone protein dnaJ 213 2e-55
Os02g0510000 Similar to Chaperone protein dnaJ 77 3e-14
Os12g0258200 Similar to ADL257Cp 74 2e-13
Os03g0401200 Similar to DnaJ homolog subfamily B member 4 (... 74 2e-13
Os02g0128400 Heat shock protein DnaJ, N-terminal domain con... 73 3e-13
Os02g0804500 Chaperone DnaJ family protein 70 2e-12
Os05g0562300 Similar to DnaJ-like protein 68 9e-12
Os05g0334400 Heat shock protein DnaJ family protein 67 1e-11
Os01g0512100 Similar to Chaperone protein dnaJ 15 (Protein ... 66 3e-11
Os01g0239100 Heat shock protein DnaJ family protein 66 5e-11
Os01g0923800 Similar to Chaperone protein dnaJ 65 7e-11
Os02g0306900 Similar to DnaJ-like protein 65 9e-11
>Os01g0556400 Heat shock protein DnaJ family protein
Length = 380
Score = 598 bits (1542), Expect = e-171, Method: Compositional matrix adjust.
Identities = 299/380 (78%), Positives = 299/380 (78%)
Query: 1 MEGNKDDAVKCLRIGKXXXXXXXXXXXVKFLSKAKRLDPSLPIDHXXXXXXXXXXXXXXX 60
MEGNKDDAVKCLRIGK VKFLSKAKRLDPSLPIDH
Sbjct: 1 MEGNKDDAVKCLRIGKAAADAGDSARAVKFLSKAKRLDPSLPIDHLLDPLLNQDDPPSSS 60
Query: 61 XXXXXXXXXXXXXXXXXXXXXXXEEATGSDGLRXXXXXXXXXXXXXSAGERSYTSEQLEV 120
EEATGSDGLR SAGERSYTSEQLEV
Sbjct: 61 ASSSSPQAPPPPPPRSSAAAASAEEATGSDGLRERKQKGKKKEEDESAGERSYTSEQLEV 120
Query: 121 VRQVKKHTRDYYQILGLEKDCTVEDVRKAYRKLSLKVHPDKNKAPGAEDAFKAVSKAFQC 180
VRQVKKHTRDYYQILGLEKDCTVEDVRKAYRKLSLKVHPDKNKAPGAEDAFKAVSKAFQC
Sbjct: 121 VRQVKKHTRDYYQILGLEKDCTVEDVRKAYRKLSLKVHPDKNKAPGAEDAFKAVSKAFQC 180
Query: 181 LSDAESRKRYDLVGSDEPVTYNRRAASTARAYNGFYEDEFDPDEIFRNFFFGGMAPATTR 240
LSDAESRKRYDLVGSDEPVTYNRRAASTARAYNGFYEDEFDPDEIFRNFFFGGMAPATTR
Sbjct: 181 LSDAESRKRYDLVGSDEPVTYNRRAASTARAYNGFYEDEFDPDEIFRNFFFGGMAPATTR 240
Query: 241 QFGQFGTFHFRTGGMHHGHGAQNSGGSTXXXXXXXXXXXXXXXXXXXPSSEPVYSLSRSY 300
QFGQFGTFHFRTGGMHHGHGAQNSGGST PSSEPVYSLSRSY
Sbjct: 241 QFGQFGTFHFRTGGMHHGHGAQNSGGSTLRMLIQLLPVLLLLLLNFLPSSEPVYSLSRSY 300
Query: 301 PYEHKFQTTRGVTYYVKLPNFEEQYPHQSTERATLERHVERDYFSILSQNCRVEVQRRHW 360
PYEHKFQTTRGVTYYVKLPNFEEQYPHQSTERATLERHVERDYFSILSQNCRVEVQRRHW
Sbjct: 301 PYEHKFQTTRGVTYYVKLPNFEEQYPHQSTERATLERHVERDYFSILSQNCRVEVQRRHW 360
Query: 361 GLSYETPHCDMLRKFEATAQ 380
GLSYETPHCDMLRKFEATAQ
Sbjct: 361 GLSYETPHCDMLRKFEATAQ 380
>Os05g0364500 Similar to Chaperone protein dnaJ
Length = 367
Score = 213 bits (542), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 141/393 (35%), Positives = 189/393 (48%), Gaps = 47/393 (11%)
Query: 1 MEGNKDDAVKCLRIGKXXXXXXXXXXXVKFLSKAKRLDPSLPIDHXXXXXXXXXXXXXXX 60
M+GNKD+A++ +++ + KFL A+RLDPSLPID
Sbjct: 1 MDGNKDEALRSVKLAETALASGDRQRAEKFLRIAQRLDPSLPIDDMLGTPKKYDTLDGAV 60
Query: 61 XXXXXXXXXXXXXXXXXXXXXXXEEATGSDGLRXXXXXXXXXXXXXSAGERSYTSEQLEV 120
E S LR S ++ YT E + V
Sbjct: 61 RQYRARSG----------------EVGESQNLRKESVGP-------SNVDKGYTEENVRV 97
Query: 121 VRQVKKHTRDYYQILGLEKDCTVEDVRKAYRKLSLKVHPDKNKAPGAEDAFKAVSKAFQC 180
VR + K+ +DYY ILG+E+ C+VE++RKAYRKLSLKVHPDKNKAPGAEDAFK VSKAF+C
Sbjct: 98 VRNITKN-KDYYAILGVERSCSVEEIRKAYRKLSLKVHPDKNKAPGAEDAFKLVSKAFKC 156
Query: 181 LSDAESRKRYDLVGSDEPVTYNRRAASTAR------------AYNGFYEDEFDPDEIFRN 228
LS+ +SR+ YD G+ E +N + ++ R ++ G YE++ DPDEIFR+
Sbjct: 157 LSNDQSRRTYDQTGAIEDHEFNYQYSNVMRQRTTRRQRQARSSFYG-YEEDLDPDEIFRS 215
Query: 229 FFFGGMAPATTRQFGQFGTFHFR-----TGGMHHGHGAQNSGGSTXXXXXXXXXXXXXXX 283
FF+G F + R H Q G
Sbjct: 216 FFYG----THDNMFQSHNAYRARGTVRQQQQQRREHPVQGGSGINLTMLVHLAGVLFFIL 271
Query: 284 XXXXPSSEPVYSLSR-SYPYEHKFQTTRGVTYYVKLPNFEEQYPHQSTERATLERHVERD 342
P+ P YSL R SY K GV Y+V F++Q+P S+ R LE++V +D
Sbjct: 272 FAFIPARHPEYSLKRTSYFSISKVTEKHGVEYFVSKQEFDQQFPRGSSSRDNLEQYVFKD 331
Query: 343 YFSILSQNCRVEVQRRHWGLSYETPHCDMLRKF 375
Y S+L + C VE+QRR W Y TPHCD LR
Sbjct: 332 YKSMLGRFCHVELQRRQWAKDYPTPHCDKLRSL 364
>Os02g0510000 Similar to Chaperone protein dnaJ
Length = 734
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 56/89 (62%), Gaps = 8/89 (8%)
Query: 130 DYYQILGLEKDCTVEDVRKAYRKLSLKVHPDKNKAPGAEDAFKAVSKAFQCLSDAESRKR 189
D+Y+IL L E+V+K YRKL+L++HPDKNK+ GAE AFK +S+A+ LSD + +
Sbjct: 72 DWYRILSLSASADEEEVKKQYRKLALQLHPDKNKSVGAEGAFKLISEAWAVLSDKSRKMQ 131
Query: 190 YDLVGSDEPV--------TYNRRAASTAR 210
YD D PV TY+++A AR
Sbjct: 132 YDQKRKDHPVTNGANGLYTYDKKAHKRAR 160
>Os12g0258200 Similar to ADL257Cp
Length = 309
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 62/117 (52%), Gaps = 6/117 (5%)
Query: 130 DYYQILGLEKDCTVEDVRKAYRKLSLKVHPDKNKAPGAEDAFKAVSKAFQCLSDAESRKR 189
D Y +LG+++D V +++KAY KLSLK HPDKN P + F ++ A++ L D +R +
Sbjct: 43 DCYDLLGVKQDANVSEIKKAYYKLSLKHHPDKNPDPESRKLFVKIANAYEILKDESTRGQ 102
Query: 190 YDL-VGSDEPVTYNRRAASTARAYNGFYEDEFDPDEIFRNFFFGGMAPATTRQFGQF 245
YD + E V YN TA+ Y +Y + DP + A QFG++
Sbjct: 103 YDYAIAHPEEVFYN-----TAQYYRAYYGHKTDPRAVLIGLLLIISAFQYLNQFGRY 154
>Os03g0401200 Similar to DnaJ homolog subfamily B member 4 (Heat shock 40 kDa
protein 1 homolog) (Heat shock protein 40 homolog)
(HSP40 homolog)
Length = 748
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 54/92 (58%), Gaps = 4/92 (4%)
Query: 129 RDYYQILGLEKDCTVEDVRKAYRKLSLKVHPDKNKAPGAEDAFKAVSKAFQCLSDAESRK 188
+D+Y IL +E E ++K YRKL L++HPDKNK+ GAE AFK V +A+ LSD R
Sbjct: 65 KDWYSILSVESSADDETLKKQYRKLVLQLHPDKNKSVGAEGAFKMVQEAWTVLSDKTKRA 124
Query: 189 RYD----LVGSDEPVTYNRRAASTARAYNGFY 216
YD L+ + +A++ A NGFY
Sbjct: 125 LYDQKRKLMVLKRNTSQTNKASAAPGASNGFY 156
>Os02g0128400 Heat shock protein DnaJ, N-terminal domain containing protein
Length = 339
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 63/110 (57%), Gaps = 9/110 (8%)
Query: 130 DYYQILGLEKDCTVEDVRKAYRKLSLKVHPDKNKAPG--AEDAFKAVSKAFQCLSDAESR 187
DYY IL + ++ T+ED++K+YR+L+ HPDKN G AE FK +++A++ LSD E R
Sbjct: 4 DYYNILKVNRNATLEDLKKSYRRLARTWHPDKNPTGGAEAEAKFKQITEAYEVLSDPEKR 63
Query: 188 KRYD------LVGSDEPVTYNR-RAASTARAYNGFYEDEFDPDEIFRNFF 230
YD L G P + +R AA+ + + F + DPD+ F F
Sbjct: 64 AIYDRYGEEGLKGMPPPGSQSRTSAAAGSSGPSNFRYNPSDPDDFFAEFM 113
>Os02g0804500 Chaperone DnaJ family protein
Length = 487
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 59/118 (50%), Gaps = 9/118 (7%)
Query: 130 DYYQILGLEKDCTVEDVRKAYRKLSLKVHPDKNKAPGAEDAFKAVSKAFQCLSDAESRKR 189
DYY LG+ + + +D++ AYRKL+ + HPD NK PGA D FK +S A++ LSD + R
Sbjct: 71 DYYATLGVPRSASNKDIKAAYRKLARQYHPDVNKEPGATDKFKEISAAYEVLSDEKKRAL 130
Query: 190 YDLVGSDEPVTYNRRAASTARAYNGFYEDEFDPDEIFRNFFFGGMAPATTRQFGQFGT 247
YD G +A AY +P ++F FF M + G F T
Sbjct: 131 YDQYGE---AGVRSAVGGSAGAYTS------NPFDLFETFFGASMGGFSGMDQGTFRT 179
>Os05g0562300 Similar to DnaJ-like protein
Length = 362
Score = 68.2 bits (165), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 49/69 (71%), Gaps = 2/69 (2%)
Query: 130 DYYQILGLEKDCTVEDVRKAYRKLSLKVHPDK--NKAPGAEDAFKAVSKAFQCLSDAESR 187
DYY+ILG++K + +D++KAYRKL++K HPDK N AE+ FK +S+A++ LSD + R
Sbjct: 4 DYYKILGVDKAASDDDLKKAYRKLAMKWHPDKNPNNKKEAENKFKQISEAYEVLSDPQKR 63
Query: 188 KRYDLVGSD 196
YD G +
Sbjct: 64 AVYDQYGEE 72
>Os05g0334400 Heat shock protein DnaJ family protein
Length = 447
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 52/101 (51%), Gaps = 11/101 (10%)
Query: 130 DYYQILGLEKDCTVEDVRKAYRKLSLKVHPDKNKAPGAEDAFKAVSKAFQCLSDAESRKR 189
D+Y LG+ ++ + +++ AYRKL+ HPD NK PGAE FK +S A++ LSD E R
Sbjct: 90 DFYSTLGVSRNASKSEIKSAYRKLARSYHPDVNKDPGAEQKFKDISNAYEVLSDDEKRSI 149
Query: 190 YDLVGSDEPVTYNRRAASTARAYNGFYEDEFDPDEIFRNFF 230
YD Y A G Y + FD +F + F
Sbjct: 150 YD--------KYGEAGLKGAGMGTGDYSNPFD---LFESLF 179
>Os01g0512100 Similar to Chaperone protein dnaJ 15 (Protein ALTERED RESPONSE TO
GRAVITY) (AtARG1) (AtJ15) (AtDjB15)
Length = 403
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 47/67 (70%), Gaps = 1/67 (1%)
Query: 129 RDYYQILGLEKDCTVEDVRKAYRKLSLKVHPDKNKA-PGAEDAFKAVSKAFQCLSDAESR 187
RD Y++L + +D + ++++ AYRKL+LK HPDKN + P A + FK V+ ++ LSD E R
Sbjct: 17 RDPYEVLSVPRDSSDQEIKSAYRKLALKYHPDKNASNPEASELFKEVAYSYSILSDPEKR 76
Query: 188 KRYDLVG 194
++YD G
Sbjct: 77 RQYDTAG 83
>Os01g0239100 Heat shock protein DnaJ family protein
Length = 349
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 70/139 (50%), Gaps = 20/139 (14%)
Query: 130 DYYQILGLEKDCTVEDVRKAYRKLSLKVHPDKNKAPG---AEDAFKAVSKAFQCLSDAES 186
DYY++LG+++ +D++KAY KL+++ HPDKN AE FK +S+A++ LSD +
Sbjct: 4 DYYKVLGVDRGAGDDDLKKAYHKLAMRWHPDKNPTNNKKEAEAKFKQISEAYEVLSDPQK 63
Query: 187 RKRYDLVGSDEPVTYNRRAASTARAYNGFYED-------EFDP---DEIFRNFFFGGMAP 236
R YD VG +E + + + FY F+P D+IF FFG P
Sbjct: 64 RTIYDQVG-EEGLKGQPPPGAGGPGASPFYPGGAHSNSFHFNPRSADDIFAE-FFGFRGP 121
Query: 237 ATTRQFGQFGTFHFRTGGM 255
F G +GGM
Sbjct: 122 -----FSSMGGMPSVSGGM 135
>Os01g0923800 Similar to Chaperone protein dnaJ
Length = 744
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 50/90 (55%), Gaps = 11/90 (12%)
Query: 130 DYYQILGLEKDCTVEDVRKAYRKLSLKVHPDKNKAPGAEDAFKAVSKAFQCLSDAESRKR 189
D Y IL + E ++K YRKL+L+ HPDKNK GAE AFK + A+ LSD + ++
Sbjct: 66 DLYGILDISASDDDEKIKKQYRKLALQTHPDKNKFSGAESAFKLIQDAWDVLSDKDKKRS 125
Query: 190 YDLVGSDEPVTYNRRAASTARAY-NGFYED 218
YD +R ++R Y NGF E+
Sbjct: 126 YD----------QKRFGGSSRVYQNGFAEN 145
>Os02g0306900 Similar to DnaJ-like protein
Length = 349
Score = 65.1 bits (157), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 2/69 (2%)
Query: 130 DYYQILGLEKDCTVEDVRKAYRKLSLKVHPDK--NKAPGAEDAFKAVSKAFQCLSDAESR 187
DYY++L +E+ T E+++KAYRKL++K HPDK N AE FK +S+A++ LSD++ R
Sbjct: 4 DYYKLLQVERGATEEELKKAYRKLAMKWHPDKNPNSKKEAEAKFKQISEAYEVLSDSQKR 63
Query: 188 KRYDLVGSD 196
YD G +
Sbjct: 64 AVYDQYGEE 72
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.133 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,591,431
Number of extensions: 397419
Number of successful extensions: 1025
Number of sequences better than 1.0e-10: 22
Number of HSP's gapped: 1031
Number of HSP's successfully gapped: 22
Length of query: 380
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 277
Effective length of database: 11,657,759
Effective search space: 3229199243
Effective search space used: 3229199243
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 157 (65.1 bits)