Os01g0512100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Chaperone protein dnaJ 15 (Protein ALTERED RESPONSE TO GRAVITY) (AtARG1) (AtJ15) (AtDjB15).
FiT-DB / Search/ Help/ Sample detail
|
Os01g0512100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Chaperone protein dnaJ 15 (Protein ALTERED RESPONSE TO GRAVITY) (AtARG1) (AtJ15) (AtDjB15).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 32.9 | 0.269 | 11.5 | -1.61 | 0.38 | 0.736 | -0.536 | -1.11 | -0.247 | 5.62 | 20.49 | 1335 | -- | -- |
| 33.78 | 0.271 | 11.5 | -1.35 | 0.366 | 0.936 | -0.629 | -- | -0.17 | 5.41 | 14.99 | 1360 | -- | -- |
| 33.52 | 0.27 | 11.5 | -1.6 | 0.393 | 0.772 | -- | -1.14 | -0.247 | 6.14 | 19.93 | 1193 | -- | -- |
| 34.44 | 0.273 | 11.5 | -1.33 | 0.369 | 0.905 | -- | -- | -0.163 | 5.65 | 14.86 | 1332 | -- | -- |
| 40.81 | 0.298 | 11.5 | -1.61 | -- | 0.802 | -- | -1.12 | -0.237 | -- | 20.07 | 1288 | -- | -- |
| 47.86 | 0.324 | 11.4 | -1.04 | 0.429 | -- | -0.537 | -- | -0.000437 | 5.12 | -- | -- | -- | -- |
| 48.59 | 0.326 | 11.4 | -1.04 | 0.425 | -- | -- | -- | 0.00213 | 5.14 | -- | -- | -- | -- |
| 41.55 | 0.3 | 11.5 | -1.36 | -- | 0.978 | -- | -- | -0.167 | -- | 14.7 | 1292 | -- | -- |
| 74.02 | 0.401 | 11.4 | -- | 0.51 | 0.348 | -- | -- | 0.0445 | 5.76 | 18.74 | 523 | -- | -- |
| 58.07 | 0.356 | 11.5 | -1.03 | -- | -- | -- | -- | 0.0129 | -- | -- | -- | -- | -- |
| 77.34 | 0.411 | 11.4 | -- | 0.407 | -- | -- | -- | 0.118 | 5.23 | -- | -- | -- | -- |
| 80.83 | 0.419 | 11.4 | -- | -- | 0.369 | -- | -- | 0.0621 | -- | 22.2 | 1265 | -- | -- |
| 86.01 | 0.433 | 11.4 | -- | -- | -- | -- | -- | 0.127 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 31.62 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 4 |
| 3 | 31.72 | temperature | 10 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 6 | 31.74 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 12 |
| 7 | 31.76 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 8 | 31.77 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 12 | 31.79 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 4 |
| 20 | 31.88 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 34 | 31.99 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 4 |
| 70 | 32.19 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 71 | 32.19 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 78 | 32.22 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 7 |
| 86 | 32.29 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 4 |
| 128 | 32.48 | temperature | 25 | 1440 | > th | dose independent | rect. | 19 | 1 |
| 134 | 32.50 | temperature | 25 | 1440 | < th | dose independent | rect. | 19 | 1 |
| 139 | 32.52 | temperature | 20 | 1440 | > th | dose dependent | sin | 16 | NA |
| 187 | 32.65 | temperature | 10 | 1440 | > th | dose dependent | sin | 17 | NA |
| 190 | 32.65 | temperature | 20 | 1440 | > th | dose dependent | rect. | 14 | 19 |
| 247 | 32.76 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 7 |
| 338 | 32.92 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 10 |
| 352 | 32.94 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 20 |
| 358 | 32.95 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 17 |
| 401 | 32.98 | temperature | 10 | 1440 | > th | dose dependent | rect. | 8 | 16 |
| 409 | 32.98 | temperature | 10 | 1440 | > th | dose dependent | rect. | 13 | 20 |
| 453 | 33.00 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 19 |
| 488 | 33.02 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 663 | 33.10 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 769 | 33.18 | temperature | 10 | 1440 | > th | dose dependent | no | NA | NA |
| 846 | 33.25 | radiation | 1 | 43200 | < th | dose dependent | rect. | 19 | 5 |