Os01g0923800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Chaperone protein dnaJ.
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Os01g0923800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Chaperone protein dnaJ.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 126.68 | 0.529 | 2.98 | -0.209 | 0.203 | -0.511 | -0.273 | -2.09 | 0.253 | 14.6 | 1.6 | 5504 | -- | -- |
| 133.57 | 0.538 | 3.03 | -0.121 | 0.172 | -0.447 | -0.208 | -- | 0.241 | 14.6 | 1.873 | 5504 | -- | -- |
| 126.82 | 0.524 | 2.98 | -0.237 | 0.197 | -0.514 | -- | -2.06 | 0.258 | 14.5 | 1.88 | 5536 | -- | -- |
| 133.56 | 0.538 | 3.03 | -0.124 | 0.178 | -0.474 | -- | -- | 0.251 | 14.5 | 1.889 | 5500 | -- | -- |
| 128.95 | 0.529 | 2.97 | -0.271 | -- | -0.594 | -- | -2.11 | 0.276 | -- | 1.9 | 5496 | -- | -- |
| 136.11 | 0.547 | 3.06 | 0.0346 | 0.222 | -- | -0.186 | -- | 0.115 | 14.2 | -- | -- | -- | -- |
| 136.24 | 0.547 | 3.06 | 0.0292 | 0.221 | -- | -- | -- | 0.114 | 14.1 | -- | -- | -- | -- |
| 135.4 | 0.542 | 3.03 | -0.136 | -- | -0.502 | -- | -- | 0.256 | -- | 1.861 | 5498 | -- | -- |
| 133.88 | 0.539 | 3.03 | -- | 0.182 | -0.41 | -- | -- | 0.247 | 14.4 | 1.809 | 5501 | -- | -- |
| 139.17 | 0.551 | 3.06 | 0.02 | -- | -- | -- | -- | 0.109 | -- | -- | -- | -- | -- |
| 136.27 | 0.546 | 3.06 | -- | 0.221 | -- | -- | -- | 0.111 | 14.1 | -- | -- | -- | -- |
| 135.85 | 0.543 | 3.03 | -- | -- | -0.466 | -- | -- | 0.26 | -- | 1.801 | 5450 | -- | -- |
| 139.18 | 0.551 | 3.06 | -- | -- | -- | -- | -- | 0.107 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 123.70 | wind | 5.0 | 14400 | < th | dose dependent | rect. | 11 | 1 |
| 2 | 123.82 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 10 | 3 |
| 3 | 123.95 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 10 | 1 |
| 10 | 124.53 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 11 | 1 |
| 11 | 124.56 | wind | 3.0 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 13 | 124.62 | wind | 3.0 | 14400 | > th | dose independent | rect. | 9 | 3 |
| 15 | 124.73 | humidity | 70.0 | 14400 | > th | dose dependent | rect. | 2 | 7 |
| 18 | 124.87 | wind | 3.0 | 43200 | > th | dose independent | rect. | 19 | 5 |
| 19 | 124.90 | wind | 3.0 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 21 | 124.93 | wind | 3.0 | 43200 | < th | dose independent | rect. | 19 | 5 |
| 22 | 124.93 | wind | 1.0 | 4320 | < th | dose dependent | rect. | 5 | 1 |
| 24 | 124.95 | humidity | 70.0 | 14400 | > th | dose dependent | rect. | 3 | 5 |
| 25 | 124.97 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 7 | 3 |
| 26 | 124.98 | wind | 3.0 | 14400 | < th | dose independent | rect. | 9 | 3 |
| 31 | 125.00 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 8 | 2 |
| 44 | 125.06 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 9 | 3 |
| 46 | 125.07 | wind | 3.0 | 43200 | < th | dose independent | rect. | 21 | 3 |
| 50 | 125.09 | wind | 1.0 | 4320 | < th | dose independent | rect. | 3 | 3 |
| 54 | 125.13 | wind | 3.0 | 43200 | > th | dose independent | rect. | 21 | 3 |
| 68 | 125.25 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 73 | 125.27 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 8 | 7 |
| 74 | 125.29 | wind | 1.0 | 4320 | > th | dose independent | rect. | 3 | 3 |
| 79 | 125.31 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 10 | 7 |
| 90 | 125.38 | wind | 1.0 | 4320 | < th | dose independent | rect. | 5 | 1 |
| 104 | 125.42 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 19 | 5 |
| 106 | 125.44 | wind | 7.0 | 43200 | < th | dose dependent | rect. | 19 | 5 |
| 112 | 125.46 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 18 | 7 |
| 113 | 125.47 | wind | 3.0 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 123 | 125.53 | wind | 1.0 | 4320 | > th | dose independent | rect. | 5 | 1 |
| 126 | 125.55 | wind | 3.0 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 134 | 125.58 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 10 | 20 |
| 136 | 125.59 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 23 | 2 |
| 168 | 125.68 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 6 | 1 |
| 171 | 125.68 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 6 | 1 |
| 184 | 125.73 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 11 | 1 |
| 185 | 125.73 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 23 | 2 |
| 234 | 125.84 | wind | 5.0 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 314 | 126.03 | wind | 5.0 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 329 | 126.06 | wind | 1.0 | 4320 | < th | dose dependent | rect. | 3 | 3 |
| 330 | 126.06 | wind | 1.0 | 1440 | < th | dose dependent | rect. | 8 | 4 |
| 348 | 126.09 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 7 | 1 |
| 376 | 126.13 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 18 | 2 |
| 485 | 126.28 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 5 | 3 |
| 488 | 126.29 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 520 | 126.33 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 530 | 126.34 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 20 | 23 |
| 546 | 126.37 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 7 | 16 |
| 547 | 126.38 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 554 | 126.38 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 8 | 14 |
| 591 | 126.43 | wind | 5.0 | 14400 | < th | dose dependent | rect. | 9 | 19 |
| 612 | 126.46 | wind | 1.0 | 1440 | < th | dose independent | rect. | 8 | 4 |
| 614 | 126.46 | wind | 3.0 | 14400 | > th | dose independent | rect. | 8 | 20 |
| 627 | 126.47 | humidity | 70.0 | 14400 | > th | dose dependent | sin | 7 | NA |
| 696 | 126.54 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 9 | 19 |
| 710 | 126.56 | wind | 1.0 | 4320 | > th | dose independent | rect. | 3 | 6 |
| 751 | 126.60 | wind | 3.0 | 14400 | < th | dose independent | rect. | 9 | 19 |
| 888 | 126.72 | wind | 3.0 | 14400 | > th | dose independent | sin | 15 | NA |
| 900 | 126.74 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 6 | 1 |
| 903 | 126.74 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 6 | 1 |
| 928 | 126.76 | humidity | 90.0 | 720 | > th | dose independent | rect. | 10 | 1 |
| 945 | 126.77 | wind | 1.0 | 1440 | > th | dose independent | rect. | 8 | 4 |
| 952 | 126.77 | wind | 1.0 | 43200 | > th | dose dependent | sin | 14 | NA |
| 986 | 126.79 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 22 | 15 |