Os12g0258200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to ADL257Cp.
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Os12g0258200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to ADL257Cp.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 39.07 | 0.294 | 10.7 | -0.422 | 0.434 | 0.716 | -0.231 | -2.25 | -0.0436 | 17.7 | 16.88 | 1536 | -- | -- |
| 43.39 | 0.307 | 10.7 | 0.145 | 0.47 | 0.8 | -0.177 | -- | 0.11 | 17 | 10.49 | 1172 | -- | -- |
| 39.08 | 0.291 | 10.7 | -0.434 | 0.399 | 0.73 | -- | -2.31 | -0.0495 | 17.7 | 17.05 | 1710 | -- | -- |
| 43.47 | 0.307 | 10.7 | 0.147 | 0.467 | 0.798 | -- | -- | 0.109 | 17 | 10.48 | 1166 | -- | -- |
| 41.35 | 0.299 | 10.7 | -0.327 | -- | 0.979 | -- | -2.51 | -0.0598 | -- | 18.43 | 447 | -- | -- |
| 53.46 | 0.343 | 10.6 | 0.381 | 0.429 | -- | -0.17 | -- | 0.248 | 17.8 | -- | -- | -- | -- |
| 53.53 | 0.343 | 10.6 | 0.382 | 0.428 | -- | -- | -- | 0.248 | 17.8 | -- | -- | -- | -- |
| 46.16 | 0.316 | 10.7 | 0.143 | -- | 1.05 | -- | -- | 0.0882 | -- | 3.26 | 440 | -- | -- |
| 43.96 | 0.309 | 10.7 | -- | 0.469 | 0.86 | -- | -- | 0.0833 | 16.9 | 6.967 | 1167 | -- | -- |
| 63.01 | 0.371 | 10.6 | 0.369 | -- | -- | -- | -- | 0.237 | -- | -- | -- | -- | -- |
| 57.38 | 0.354 | 10.6 | -- | 0.422 | -- | -- | -- | 0.205 | 17.8 | -- | -- | -- | -- |
| 46.66 | 0.318 | 10.7 | -- | -- | 1.1 | -- | -- | 0.0665 | -- | 0.3788 | 444 | -- | -- |
| 66.6 | 0.381 | 10.6 | -- | -- | -- | -- | -- | 0.197 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 37.22 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 2 |
| 3 | 37.36 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 4 |
| 18 | 38.19 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 19 | 38.22 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 10 |
| 41 | 38.44 | humidity | 90 | 14400 | > th | dose dependent | sin | 12 | NA |
| 68 | 38.66 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 1 |
| 71 | 38.68 | temperature | 15 | 1440 | > th | dose dependent | rect. | 20 | 12 |
| 75 | 38.70 | radiation | 30 | 14400 | > th | dose independent | rect. | 16 | 16 |
| 83 | 38.73 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 11 |
| 86 | 38.74 | temperature | 30 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 104 | 38.78 | temperature | 15 | 1440 | > th | dose dependent | sin | 11 | NA |
| 112 | 38.79 | temperature | 15 | 1440 | > th | dose dependent | rect. | 20 | 7 |
| 133 | 38.82 | humidity | 90 | 14400 | > th | dose independent | rect. | 21 | 7 |
| 138 | 38.83 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 7 |
| 164 | 38.86 | radiation | 1 | 4320 | > th | dose independent | rect. | 18 | 11 |
| 183 | 38.88 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 5 |
| 184 | 38.88 | temperature | 15 | 1440 | > th | dose dependent | rect. | 2 | 6 |
| 232 | 38.94 | temperature | 15 | 1440 | > th | dose dependent | rect. | 5 | 2 |
| 246 | 38.95 | temperature | 30 | 1440 | < th | dose dependent | rect. | 2 | 6 |
| 257 | 38.96 | temperature | 25 | 1440 | < th | dose dependent | rect. | 2 | 4 |
| 264 | 38.97 | temperature | 30 | 1440 | < th | dose dependent | sin | 10 | NA |
| 275 | 38.98 | temperature | 25 | 1440 | < th | dose dependent | rect. | 5 | 1 |
| 286 | 38.99 | humidity | 90 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 291 | 38.99 | temperature | 25 | 1440 | < th | dose dependent | rect. | 23 | 7 |
| 321 | 39.01 | radiation | 30 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 336 | 39.01 | temperature | 25 | 1440 | < th | dose dependent | rect. | 2 | 1 |
| 359 | 39.03 | temperature | 15 | 90 | > th | dose dependent | sin | 16 | NA |
| 367 | 39.04 | radiation | 1 | 4320 | > th | dose independent | rect. | 18 | 1 |
| 385 | 39.05 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 459 | 39.10 | temperature | 15 | 1440 | > th | dose dependent | rect. | 2 | 1 |
| 484 | 39.12 | humidity | 90 | 14400 | < th | dose independent | rect. | 21 | 6 |
| 646 | 39.24 | humidity | 90 | 14400 | < th | dose independent | rect. | 22 | 3 |
| 726 | 39.30 | radiation | 30 | 14400 | > th | dose dependent | rect. | 16 | 16 |
| 735 | 39.31 | radiation | 1 | 14400 | < th | dose dependent | rect. | 24 | 5 |
| 842 | 39.39 | temperature | 15 | 1440 | > th | dose dependent | no | NA | NA |
| 894 | 39.42 | temperature | 15 | 1440 | > th | dose dependent | rect. | 24 | 23 |
| 951 | 39.46 | temperature | 15 | 1440 | > th | dose dependent | rect. | 4 | 23 |
| 960 | 39.47 | temperature | 20 | 720 | > th | dose dependent | rect. | 5 | 19 |
| 1000 | 39.50 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 12 |