Os02g0510000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Chaperone protein dnaJ.
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Os02g0510000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Chaperone protein dnaJ.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 20.66 | 0.214 | 9 | 0.557 | 0.437 | 1.15 | -0.329 | -0.563 | -0.0633 | 9.34 | 26.72 | 106 | -- | -- |
| 21.11 | 0.214 | 9.01 | 0.457 | 0.45 | 1.18 | -0.249 | -- | -0.0851 | 9.3 | 26.52 | 98 | -- | -- |
| 21.02 | 0.214 | 9 | 0.549 | 0.442 | 1.17 | -- | -0.463 | -0.0629 | 9.5 | 26.81 | 103 | -- | -- |
| 21.27 | 0.215 | 9.01 | 0.453 | 0.456 | 1.2 | -- | -- | -0.0805 | 9.51 | 26.64 | 87 | -- | -- |
| 28.34 | 0.248 | 9.01 | 0.645 | -- | 1.16 | -- | -0.994 | -0.0412 | -- | 28.38 | 405 | -- | -- |
| 40.98 | 0.3 | 9.07 | 0.166 | 0.487 | -- | -0.489 | -- | -0.345 | 6.93 | -- | -- | -- | -- |
| 41.6 | 0.302 | 9.07 | 0.158 | 0.486 | -- | -- | -- | -0.343 | 6.99 | -- | -- | -- | -- |
| 29.37 | 0.252 | 9.02 | 0.47 | -- | 1.2 | -- | -- | -0.0761 | -- | 27.48 | 350 | -- | -- |
| 26.15 | 0.238 | 9.03 | -- | 0.463 | 1 | -- | -- | -0.173 | 8.97 | 26.34 | 73 | -- | -- |
| 53.99 | 0.343 | 9.08 | 0.167 | -- | -- | -- | -- | -0.334 | -- | -- | -- | -- | -- |
| 42.25 | 0.304 | 9.07 | -- | 0.487 | -- | -- | -- | -0.361 | 6.97 | -- | -- | -- | -- |
| 34.65 | 0.274 | 9.04 | -- | -- | 1.03 | -- | -- | -0.161 | -- | 27.65 | 344 | -- | -- |
| 54.73 | 0.345 | 9.08 | -- | -- | -- | -- | -- | -0.353 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 20.74 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 22 |
| 2 | 20.76 | temperature | 25 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 3 | 20.99 | temperature | 25 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 4 | 21.07 | temperature | 25 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 6 | 21.11 | temperature | 25 | 90 | < th | dose dependent | no | NA | NA |
| 7 | 21.16 | temperature | 25 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 9 | 21.24 | temperature | 25 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 10 | 21.25 | temperature | 25 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 11 | 21.28 | temperature | 25 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 12 | 21.30 | temperature | 25 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 18 | 21.36 | temperature | 25 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 20 | 21.41 | temperature | 25 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 39 | 21.59 | temperature | 25 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 87 | 22.17 | temperature | 30 | 90 | < th | dose dependent | sin | 8 | NA |
| 95 | 22.27 | temperature | 10 | 90 | > th | dose dependent | sin | 8 | NA |
| 171 | 22.96 | temperature | 15 | 90 | > th | dose dependent | rect. | 6 | 23 |
| 234 | 23.33 | temperature | 15 | 270 | > th | dose dependent | rect. | 15 | 22 |
| 409 | 24.38 | temperature | 10 | 90 | > th | dose dependent | no | NA | NA |
| 463 | 24.62 | temperature | 10 | 720 | > th | dose dependent | rect. | 7 | 20 |
| 565 | 25.10 | temperature | 10 | 720 | > th | dose dependent | rect. | 14 | 14 |
| 582 | 25.18 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 15 |
| 589 | 25.21 | temperature | 30 | 270 | < th | dose dependent | rect. | 13 | 17 |
| 617 | 25.29 | temperature | 15 | 270 | > th | dose dependent | rect. | 22 | 12 |
| 634 | 25.32 | temperature | 25 | 720 | < th | dose dependent | rect. | 7 | 17 |
| 636 | 25.34 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 19 |
| 941 | 26.05 | wind | 5 | 43200 | > th | dose independent | rect. | 15 | 7 |
| 966 | 26.11 | wind | 5 | 43200 | < th | dose independent | rect. | 15 | 7 |
| 967 | 26.11 | wind | 5 | 43200 | > th | dose independent | rect. | 14 | 11 |