Os05g0364500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Chaperone protein dnaJ.
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Os05g0364500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Chaperone protein dnaJ.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 32.53 | 0.268 | 9.57 | -0.0964 | 0.441 | -0.732 | -0.092 | 0.47 | -0.129 | 7.09 | 28.9 | 14 | -- | -- |
| 32.84 | 0.269 | 9.57 | -0.0131 | 0.436 | -0.732 | -0.0956 | -- | -0.105 | 7.09 | 28.69 | 13 | -- | -- |
| 32.55 | 0.268 | 9.57 | -0.0906 | 0.434 | -0.718 | -- | 0.464 | -0.122 | 7.18 | 28.9 | 14 | -- | -- |
| 32.86 | 0.269 | 9.56 | -0.0135 | 0.435 | -0.727 | -- | -- | -0.104 | 7.15 | 28.7 | 12 | -- | -- |
| 41.68 | 0.302 | 9.58 | -0.0514 | -- | -0.731 | -- | 0.276 | -0.108 | -- | 25.1 | 14 | -- | -- |
| 40.27 | 0.297 | 9.53 | 0.156 | 0.442 | -- | 0.154 | -- | 0.0453 | 9.34 | -- | -- | -- | -- |
| 40.35 | 0.297 | 9.53 | 0.161 | 0.442 | -- | -- | -- | 0.0452 | 9.25 | -- | -- | -- | -- |
| 41.79 | 0.302 | 9.57 | -0.0114 | -- | -0.756 | -- | -- | -0.0961 | -- | 24.95 | 7 | -- | -- |
| 32.87 | 0.268 | 9.56 | -- | 0.435 | -0.721 | -- | -- | -0.101 | 7.17 | 28.7 | 12 | -- | -- |
| 51.72 | 0.336 | 9.54 | 0.159 | -- | -- | -- | -- | 0.0472 | -- | -- | -- | -- | -- |
| 41.03 | 0.3 | 9.53 | -- | 0.442 | -- | -- | -- | 0.0273 | 9.23 | -- | -- | -- | -- |
| 41.79 | 0.302 | 9.57 | -- | -- | -0.752 | -- | -- | -0.0943 | -- | 24.95 | 7 | -- | -- |
| 52.39 | 0.338 | 9.55 | -- | -- | -- | -- | -- | 0.0295 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 31.34 | temperature | 30 | 10 | < th | dose dependent | rect. | 22 | 23 |
| 4 | 31.42 | humidity | 90 | 14400 | > th | dose dependent | rect. | 2 | 7 |
| 6 | 31.43 | humidity | 90 | 14400 | > th | dose dependent | rect. | 4 | 3 |
| 7 | 31.45 | humidity | 90 | 14400 | > th | dose dependent | rect. | 1 | 9 |
| 9 | 31.47 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 13 | 31.51 | humidity | 90 | 14400 | > th | dose dependent | rect. | 18 | 12 |
| 25 | 31.57 | humidity | 90 | 14400 | > th | dose dependent | sin | 9 | NA |
| 90 | 31.85 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 5 |
| 113 | 31.96 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 170 | 32.22 | temperature | 30 | 10 | < th | dose dependent | rect. | 10 | 22 |
| 186 | 32.28 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 256 | 32.50 | temperature | 25 | 1440 | < th | dose dependent | rect. | 19 | 15 |
| 300 | 32.58 | temperature | 25 | 1440 | < th | dose dependent | sin | 10 | NA |
| 329 | 32.62 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 339 | 32.63 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 1 |
| 351 | 32.65 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 370 | 32.69 | temperature | 10 | 1440 | > th | dose dependent | rect. | 20 | 10 |
| 375 | 32.70 | temperature | 10 | 1440 | > th | dose dependent | rect. | 20 | 8 |
| 379 | 32.70 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 392 | 32.72 | temperature | 20 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 407 | 32.73 | temperature | 20 | 1440 | < th | dose dependent | rect. | 2 | 3 |
| 410 | 32.73 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 10 |
| 443 | 32.76 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 1 |
| 445 | 32.76 | temperature | 10 | 1440 | > th | dose dependent | rect. | 20 | 5 |
| 456 | 32.77 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 502 | 32.79 | temperature | 30 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 532 | 32.82 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 564 | 32.83 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 623 | 32.88 | humidity | 90 | 14400 | > th | dose dependent | no | NA | NA |
| 638 | 32.89 | temperature | 10 | 1440 | > th | dose dependent | sin | 11 | NA |
| 673 | 32.91 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 5 |
| 723 | 32.94 | temperature | 10 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 743 | 32.94 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 745 | 32.95 | temperature | 25 | 1440 | < th | dose dependent | rect. | 5 | 1 |
| 802 | 32.98 | temperature | 10 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 850 | 33.01 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 3 |
| 875 | 33.01 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 876 | 33.02 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 960 | 33.06 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 4 |
| 996 | 33.08 | humidity | 90 | 14400 | > th | dose independent | rect. | 2 | 6 |