BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0443800 Os12g0443800|AK102599
(144 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0443800 AAA ATPase, central region domain containing p... 293 4e-80
Os01g0141300 80 4e-16
Os06g0130000 Similar to Tobacco mosaic virus helicase domai... 77 3e-15
Os11g0661400 AAA ATPase, central region domain containing p... 72 1e-13
Os01g0757400 Similar to Katanin p60 ATPase-containing subun... 72 2e-13
Os01g0226400 AAA ATPase domain containing protein 72 2e-13
Os01g0673500 Similar to Katanin p60 ATPase-containing subun... 70 4e-13
Os03g0344700 AAA ATPase domain containing protein 70 6e-13
Os01g0683100 Similar to Katanin p60 ATPase-containing subun... 70 6e-13
Os07g0672500 SMAD/FHA domain containing protein 69 9e-13
Os01g0623500 AAA ATPase domain containing protein 67 4e-12
Os05g0584600 AAA ATPase domain containing protein 67 5e-12
>Os12g0443800 AAA ATPase, central region domain containing protein
Length = 144
Score = 293 bits (749), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 144/144 (100%), Positives = 144/144 (100%)
Query: 1 MIVNSPAVQIGEGEKLVRALFGVACCRQPAVIFVDEIDSLLSQRKSDGEHESSRRLKTQF 60
MIVNSPAVQIGEGEKLVRALFGVACCRQPAVIFVDEIDSLLSQRKSDGEHESSRRLKTQF
Sbjct: 1 MIVNSPAVQIGEGEKLVRALFGVACCRQPAVIFVDEIDSLLSQRKSDGEHESSRRLKTQF 60
Query: 61 LIEMEGFDSGNDQILLIGTSCVKKMKISSVICINVCHGRNYRIFICMRFEHQHSMCFSIV 120
LIEMEGFDSGNDQILLIGTSCVKKMKISSVICINVCHGRNYRIFICMRFEHQHSMCFSIV
Sbjct: 61 LIEMEGFDSGNDQILLIGTSCVKKMKISSVICINVCHGRNYRIFICMRFEHQHSMCFSIV 120
Query: 121 LVKCIIAYPSLPKGLCFEVVLHSL 144
LVKCIIAYPSLPKGLCFEVVLHSL
Sbjct: 121 LVKCIIAYPSLPKGLCFEVVLHSL 144
>Os01g0141300
Length = 448
Score = 80.5 bits (197), Expect = 4e-16, Method: Composition-based stats.
Identities = 35/71 (49%), Positives = 53/71 (74%)
Query: 10 IGEGEKLVRALFGVACCRQPAVIFVDEIDSLLSQRKSDGEHESSRRLKTQFLIEMEGFDS 69
+GE EKLV LF +A P++IF+DEIDSL QR E+E+SRR+KT+ L++M+GFD+
Sbjct: 183 MGESEKLVANLFQMARENAPSIIFIDEIDSLCGQRGECNENEASRRIKTELLVQMQGFDN 242
Query: 70 GNDQILLIGTS 80
ND++L++ +
Sbjct: 243 SNDKVLVLAAT 253
>Os06g0130000 Similar to Tobacco mosaic virus helicase domain-binding protein
(Fragment)
Length = 487
Score = 77.4 bits (189), Expect = 3e-15, Method: Composition-based stats.
Identities = 36/68 (52%), Positives = 54/68 (79%), Gaps = 1/68 (1%)
Query: 10 IGEGEKLVRALFGVACCRQPAVIFVDEIDSLLSQRKSDGEHESSRRLKTQFLIEMEGFDS 69
+GE EKLVR LF VA RQP+VIF+DEIDS++S R ++ E+++SRRLK++FLI+ +G S
Sbjct: 289 VGEAEKLVRTLFMVAVDRQPSVIFMDEIDSVMSARLAN-ENDASRRLKSEFLIQFDGVTS 347
Query: 70 GNDQILLI 77
D ++++
Sbjct: 348 NPDDLVIV 355
>Os11g0661400 AAA ATPase, central region domain containing protein
Length = 241
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 54/71 (76%), Gaps = 1/71 (1%)
Query: 11 GEGEKLVRALFGVACCRQPAVIFVDEIDSLLSQRKSDGEHESSRRLKTQFLIEMEGFDSG 70
GEGEK V+A+F +A P+VIF+DE+DS+L +R++ GEHE+ R++K +F++ +G +
Sbjct: 16 GEGEKYVKAVFSLASKIAPSVIFIDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK 75
Query: 71 N-DQILLIGTS 80
+ +++L++G +
Sbjct: 76 DKERVLVLGAT 86
>Os01g0757400 Similar to Katanin p60 ATPase-containing subunit A1 (EC 3.6.4.3)
(Katanin p60 subunit A1) (p60 katanin). Splice isoform 2
Length = 386
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 52/73 (71%), Gaps = 1/73 (1%)
Query: 11 GEGEKLVRALFGVACCRQPAVIFVDEIDSLLSQR-KSDGEHESSRRLKTQFLIEMEGFDS 69
G+ EKLV+ LF +A P+ IF+DEID+++SQR ++ EHE+SRRLKT+ LI+M+G
Sbjct: 177 GDSEKLVKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTK 236
Query: 70 GNDQILLIGTSCV 82
ND + ++ + +
Sbjct: 237 TNDLVFVLAATNL 249
>Os01g0226400 AAA ATPase domain containing protein
Length = 840
Score = 71.6 bits (174), Expect = 2e-13, Method: Composition-based stats.
Identities = 33/67 (49%), Positives = 45/67 (67%)
Query: 11 GEGEKLVRALFGVACCRQPAVIFVDEIDSLLSQRKSDGEHESSRRLKTQFLIEMEGFDSG 70
GE EK VRALF +A P +IFVDE+DS+L QR GEHE+ R++K +F+ +G S
Sbjct: 608 GEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRNRAGEHEAMRKIKNEFMTHWDGLLSR 667
Query: 71 NDQILLI 77
DQ +L+
Sbjct: 668 PDQKILV 674
>Os01g0673500 Similar to Katanin p60 ATPase-containing subunit A1 (EC 3.6.4.3)
(Katanin p60 subunit A1) (p60 katanin). Splice isoform 2
Length = 370
Score = 70.5 bits (171), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 52/73 (71%), Gaps = 1/73 (1%)
Query: 11 GEGEKLVRALFGVACCRQPAVIFVDEIDSLLSQR-KSDGEHESSRRLKTQFLIEMEGFDS 69
G+ EKLV+ LF +A P+ IF+DEID+++SQR ++ EHE+SRRLKT+ LI+M+G
Sbjct: 165 GDSEKLVKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTK 224
Query: 70 GNDQILLIGTSCV 82
+D + ++ + +
Sbjct: 225 TDDLVFVLAATNL 237
>Os03g0344700 AAA ATPase domain containing protein
Length = 666
Score = 70.1 bits (170), Expect = 6e-13, Method: Composition-based stats.
Identities = 28/67 (41%), Positives = 49/67 (73%)
Query: 11 GEGEKLVRALFGVACCRQPAVIFVDEIDSLLSQRKSDGEHESSRRLKTQFLIEMEGFDSG 70
GEGEK V+A+F +A P+VIFVDE+D +L +R++ GEHE+ R++K +F++ +G +
Sbjct: 441 GEGEKFVKAVFSLASKIAPSVIFVDEVDGMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK 500
Query: 71 NDQILLI 77
+ + +L+
Sbjct: 501 DKERVLV 507
>Os01g0683100 Similar to Katanin p60 ATPase-containing subunit (EC 3.6.4.3)
(Katanin p60 subunit) (p60 katanin) (Atp60) (CAD ATPase)
(Katanin 1) (BOTERO1 protein) (ECTOPIC ROOT HAIR 3
protein) (FAT ROOT protein) (FRAGILE FIBER 2 protein)
(AtAAA1)
Length = 519
Score = 70.1 bits (170), Expect = 6e-13, Method: Composition-based stats.
Identities = 29/61 (47%), Positives = 46/61 (75%)
Query: 11 GEGEKLVRALFGVACCRQPAVIFVDEIDSLLSQRKSDGEHESSRRLKTQFLIEMEGFDSG 70
GE E++VR LF +A P+ IF+DEIDSL + R + GEHESSRR+K++ L++++G ++
Sbjct: 310 GESERMVRCLFDLARFYAPSTIFIDEIDSLCTSRGASGEHESSRRVKSELLVQIDGVNNS 369
Query: 71 N 71
+
Sbjct: 370 S 370
>Os07g0672500 SMAD/FHA domain containing protein
Length = 1081
Score = 69.3 bits (168), Expect = 9e-13, Method: Composition-based stats.
Identities = 28/67 (41%), Positives = 49/67 (73%)
Query: 11 GEGEKLVRALFGVACCRQPAVIFVDEIDSLLSQRKSDGEHESSRRLKTQFLIEMEGFDSG 70
GEGEK V+A+F +A P+VIFVDE+D +L +R++ GEHE+ R++K +F++ +G +
Sbjct: 856 GEGEKYVKAVFSLASKIAPSVIFVDEVDGMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK 915
Query: 71 NDQILLI 77
+ + +L+
Sbjct: 916 DKERVLV 922
>Os01g0623500 AAA ATPase domain containing protein
Length = 812
Score = 67.0 bits (162), Expect = 4e-12, Method: Composition-based stats.
Identities = 30/71 (42%), Positives = 50/71 (70%), Gaps = 1/71 (1%)
Query: 11 GEGEKLVRALFGVACCRQPAVIFVDEIDSLLSQRKSDGEHESSRRLKTQFLIEMEGFDS- 69
GE EK ++ALF +A PA+IF+DE+DS+L +R + E+E+SRR+K +F+ +G S
Sbjct: 545 GESEKCIQALFSLAAKLAPAIIFIDEVDSMLGKRDNHSENEASRRVKNEFMAHWDGLLSK 604
Query: 70 GNDQILLIGTS 80
N++IL++ +
Sbjct: 605 SNERILVLAAT 615
>Os05g0584600 AAA ATPase domain containing protein
Length = 855
Score = 67.0 bits (162), Expect = 5e-12, Method: Composition-based stats.
Identities = 31/67 (46%), Positives = 45/67 (67%)
Query: 11 GEGEKLVRALFGVACCRQPAVIFVDEIDSLLSQRKSDGEHESSRRLKTQFLIEMEGFDSG 70
GE EK VRALF +A P +IFVDE+DS+L QR GEHE+ R++K +F+ +G S
Sbjct: 577 GEDEKNVRALFSLAAKVAPTIIFVDEVDSMLGQRARCGEHEAMRKIKNEFMSHWDGLLSK 636
Query: 71 NDQILLI 77
+ + +L+
Sbjct: 637 SGERILV 643
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.329 0.141 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,740,228
Number of extensions: 171435
Number of successful extensions: 503
Number of sequences better than 1.0e-10: 12
Number of HSP's gapped: 519
Number of HSP's successfully gapped: 12
Length of query: 144
Length of database: 17,035,801
Length adjustment: 91
Effective length of query: 53
Effective length of database: 12,284,327
Effective search space: 651069331
Effective search space used: 651069331
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 151 (62.8 bits)