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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0661400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : AAA ATPase, central region domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.7 (0.0125) R2 : 0.0552
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.136 (0.0263) R2dN8 : 0.0713 R2N8 : 0.0552
σ : 0.235
deviance : 25.4
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
15.09 0.183 11.6 0.208 0.2 0.405 0.261 -1.39 0.273 3.94 25.35 626 -- --
18.23 0.2 11.7 -0.062 0.182 0.512 -0.172 -- 0.21 7.12 24.99 805 -- --
15.25 0.182 11.6 0.219 0.211 0.416 -- -1.42 0.28 3.71 25.7 695 -- --
16.89 0.191 11.7 0.158 0.242 0.824 -- -- 0.236 4.84 19.01 7732 -- --
16.52 0.189 11.6 0.274 -- 0.644 -- -2.01 0.287 -- 57.19 406 -- --
21.91 0.219 11.7 -0.185 0.221 -- 0.144 -- 0.111 4.75 -- -- -- --
21.96 0.219 11.7 -0.186 0.223 -- -- -- 0.11 4.96 -- -- -- --
18.83 0.202 11.7 -0.0761 -- 0.55 -- -- 0.181 -- 28.94 270 -- --
17.25 0.193 11.7 -- 0.231 0.775 -- -- 0.177 4.77 17.84 6670 -- --
24.57 0.232 11.7 -0.178 -- -- -- -- 0.116 -- -- -- -- --
22.87 0.224 11.7 -- 0.219 -- -- -- 0.131 4.99 -- -- -- --
18.67 0.201 11.7 -- -- 0.614 -- -- 0.244 -- 27.65 320 -- --
25.4 0.235 11.7 -- -- -- -- -- 0.136 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 15.11 temperature 15 720 > th dose dependent rect. 15 17
3 15.11 temperature 25 720 < th dose dependent rect. 9 22
17 15.16 temperature 25 720 < th dose dependent rect. 3 23
32 15.21 temperature 25 720 < th dose dependent no NA NA
34 15.21 temperature 25 720 < th dose dependent rect. 13 23
41 15.23 temperature 10 720 > th dose dependent rect. 15 23
56 15.25 temperature 25 720 < th dose dependent rect. 1 23
57 15.26 temperature 30 1440 < th dose dependent rect. 11 11
59 15.26 temperature 10 720 > th dose dependent rect. 19 23
88 15.31 temperature 30 720 < th dose dependent rect. 14 16
110 15.33 temperature 25 720 < th dose dependent rect. 23 23
111 15.34 temperature 15 720 > th dose dependent sin 13 NA
120 15.35 temperature 30 1440 < th dose dependent rect. 13 9
136 15.36 temperature 10 720 > th dose dependent rect. 17 23
139 15.37 temperature 30 1440 < th dose dependent sin 19 NA
152 15.38 temperature 30 1440 < th dose dependent rect. 17 1
154 15.38 temperature 20 1440 > th dose dependent rect. 15 7
182 15.40 temperature 15 1440 > th dose dependent rect. 11 11
205 15.42 temperature 10 720 > th dose dependent no NA NA
218 15.42 temperature 15 720 > th dose dependent rect. 8 23
234 15.44 temperature 10 1440 > th dose dependent rect. 14 8
253 15.44 temperature 15 720 > th dose dependent rect. 6 23
294 15.47 temperature 10 1440 > th dose dependent sin 19 NA
296 15.47 temperature 25 720 < th dose dependent sin 13 NA
366 15.49 temperature 10 720 > th dose dependent rect. 21 23
436 15.53 temperature 15 1440 > th dose dependent rect. 17 1
440 15.53 humidity 90 14400 > th dose dependent rect. 18 11
497 15.55 temperature 30 1440 < th dose dependent rect. 11 2
503 15.55 humidity 90 14400 > th dose dependent rect. 19 9
556 15.56 temperature 15 720 > th dose dependent rect. 4 23
566 15.57 temperature 30 1440 < th dose dependent rect. 11 4
574 15.57 humidity 90 14400 > th dose dependent rect. 24 12
683 15.61 temperature 25 1440 < th dose independent rect. 10 15
722 15.62 humidity 90 14400 > th dose dependent sin 8 NA
784 15.64 temperature 25 1440 > th dose independent rect. 11 14
853 15.65 temperature 15 720 > th dose dependent rect. 2 23