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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0226400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : AAA ATPase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.54 (0.0319) R2 : 0.375
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.02 (0.0793) R2dC : 0.235 R2C : 0.147
β3 : 1.13 (0.0897) R2dE : 0.22 R2E : 0.132
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.149 (0.0672) R2dN8 : 0.00937 R2N8 : 0.00512
σ : 0.599
deviance : 165.55
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_____
C
peak time of C : 14.1
E
wheather : temperature
threshold : 26.58
memory length : 1286
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
162.97 0.6 5.53 -0.113 1.01 1.11 -0.719 0.11 0.144 14.2 26.5 1309 -- --
162.98 0.595 5.53 -0.132 1.02 1.12 -0.733 -- 0.142 14.2 26.5 1307 -- --
164.86 0.598 5.53 -0.104 1.01 1.11 -- 0.263 0.146 14.2 26.48 1303 -- --
164.89 0.598 5.54 -0.158 1.02 1.14 -- -- 0.135 14.2 26.5 1292 -- --
214.37 0.682 5.54 -0.08 -- 1.15 -- 0.453 0.111 -- 26.2 1712 -- --
217.02 0.691 5.53 0.23 0.845 -- -1.01 -- 0.176 14.3 -- -- -- --
220.76 0.696 5.53 0.202 0.842 -- -- -- 0.17 14.2 -- -- -- --
214.37 0.682 5.55 -0.188 -- 1.2 -- -- 0.0906 -- 26.24 1711 -- --
165.55 0.599 5.54 -- 1.02 1.13 -- -- 0.149 14.1 26.58 1286 -- --
262.91 0.758 5.54 0.166 -- -- -- -- 0.15 -- -- -- -- --
221.83 0.697 5.54 -- 0.838 -- -- -- 0.148 14.2 -- -- -- --
215.22 0.683 5.55 -- -- 1.16 -- -- 0.115 -- 26.3 1710 -- --
263.64 0.758 5.54 -- -- -- -- -- 0.131 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 163.21 temperature 25 1440 > th dose dependent rect. 13 1
2 164.64 temperature 25 1440 > th dose dependent rect. 13 10
13 165.24 temperature 25 1440 > th dose dependent rect. 13 20
20 165.36 temperature 30 1440 < th dose independent rect. 18 20
24 165.40 temperature 25 1440 > th dose dependent sin 19 NA
30 165.45 temperature 25 1440 > th dose dependent rect. 7 16
89 165.72 temperature 25 1440 > th dose dependent rect. 16 3
133 165.86 temperature 30 1440 > th dose independent rect. 18 20
147 165.90 temperature 25 720 > th dose dependent rect. 18 15
179 166.01 temperature 25 1440 > th dose dependent no NA NA
195 166.05 temperature 25 1440 > th dose dependent rect. 20 23
212 166.11 temperature 25 720 > th dose dependent rect. 17 17
216 166.13 temperature 25 1440 > th dose dependent rect. 16 23
265 166.34 temperature 30 1440 < th dose independent rect. 11 3
266 166.35 temperature 30 1440 < th dose independent rect. 9 5
295 166.56 radiation 10 1440 > th dose dependent rect. 16 15
302 166.59 temperature 30 1440 > th dose independent rect. 9 5
303 166.60 temperature 30 1440 < th dose independent rect. 9 10
304 166.60 temperature 30 1440 < th dose independent rect. 9 12
307 166.60 temperature 30 1440 < th dose independent rect. 9 23
314 166.61 temperature 30 1440 < th dose independent rect. 9 19
330 166.67 temperature 30 1440 < th dose independent rect. 11 23
331 166.67 radiation 30 1440 < th dose dependent rect. 16 15
336 166.69 temperature 30 1440 < th dose independent rect. 3 11
338 166.70 temperature 30 1440 < th dose independent rect. 3 16
339 166.70 temperature 30 1440 < th dose independent rect. 3 18
341 166.70 temperature 30 1440 < th dose independent rect. 3 20
344 166.71 temperature 30 1440 < th dose independent rect. 6 8
345 166.71 temperature 30 1440 < th dose independent rect. 6 13
346 166.71 temperature 30 1440 < th dose independent rect. 6 15
349 166.71 temperature 30 1440 < th dose independent rect. 6 17
381 166.72 temperature 30 1440 < th dose independent rect. 20 23
384 166.73 temperature 30 1440 < th dose independent no NA NA
389 166.73 temperature 30 1440 < th dose independent rect. 24 14
397 166.73 temperature 30 1440 < th dose independent rect. 20 18
404 166.73 temperature 30 1440 < th dose independent rect. 22 21
405 166.73 temperature 30 1440 < th dose independent rect. 6 22
417 166.74 temperature 30 1440 < th dose independent rect. 22 16
455 166.81 temperature 30 1440 > th dose independent rect. 9 10
475 166.86 temperature 30 1440 > th dose independent rect. 11 3
478 166.88 radiation 10 1440 > th dose independent rect. 15 16
508 166.90 temperature 30 1440 < th dose independent rect. 13 23
670 166.97 temperature 30 1440 < th dose independent sin 21 NA
679 166.98 temperature 30 1440 > th dose independent rect. 11 23
681 166.98 humidity 50 1440 > th dose dependent rect. 13 9
704 167.02 radiation 20 1440 > th dose dependent rect. 15 17
705 167.03 temperature 30 1440 > th dose independent no NA NA
924 167.19 temperature 30 1440 > th dose independent sin 19 NA
945 167.20 temperature 30 1440 > th dose independent rect. 13 23
956 167.24 temperature 30 1440 < th dose independent sin 11 NA