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Os06g0130000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Tobacco mosaic virus helicase domain-binding protein (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.51 (0.0163) R2 : 0.426
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.738 (0.0402) R2dC : 0.425 R2C : 0.423
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0432 (0.0342) R2dN8 : 0.00258 R2N8 : 0.000603
σ : 0.307
deviance : 43.05
__
_____
C
peak time of C : 2.61
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
34.04 0.274 9.54 0.234 0.762 0.289 0.0536 1.09 -0.0621 2.56 29.7 4312 -- --
33.97 0.271 9.5 0.48 0.765 0.411 0.0657 -- 0.0202 2.47 28.8 4598 -- --
34.05 0.272 9.54 0.234 0.762 0.289 -- 1.09 -0.0621 2.57 29.7 4312 -- --
33.55 0.27 9.49 0.465 0.727 0.374 -- -- 0.0548 2.53 28.93 6063 -- --
52.98 0.341 9.48 0.579 -- 0.601 -- -0.907 0.0744 -- 29.3 6128 -- --
40.06 0.297 9.51 0.337 0.732 -- -0.0166 -- -0.00572 2.6 -- -- -- --
40.06 0.296 9.51 0.337 0.731 -- -- -- -0.00562 2.6 -- -- -- --
51.82 0.337 9.49 0.477 -- 0.536 -- -- 0.054 -- 28.93 6063 -- --
39.03 0.291 9.5 -- 0.749 0.311 -- -- 0.023 2.48 29.7 7475 -- --
71.37 0.395 9.5 0.368 -- -- -- -- 0.0128 -- -- -- -- --
43.05 0.307 9.51 -- 0.738 -- -- -- -0.0432 2.61 -- -- -- --
57.74 0.355 9.5 -- -- 0.499 -- -- -0.000987 -- 28.93 6063 -- --
74.95 0.404 9.51 -- -- -- -- -- -0.0281 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 31.77 temperature 15.0 720 > th dose dependent rect. 3 12
2 31.82 temperature 15.0 720 > th dose dependent rect. 3 10
4 31.84 temperature 10.0 720 > th dose dependent rect. 1 14
5 31.89 temperature 15.0 10 > th dose dependent rect. 5 19
18 32.08 temperature 30.0 14400 > th dose independent rect. 17 16
19 32.13 temperature 30.0 14400 < th dose independent rect. 18 15
23 32.21 temperature 30.0 720 < th dose dependent rect. 24 14
24 32.22 wind 9.0 43200 < th dose independent rect. 19 6
27 32.27 radiation 10.0 14400 > th dose independent rect. 17 1
45 32.30 wind 9.0 43200 < th dose independent rect. 19 4
47 32.31 temperature 30.0 720 < th dose dependent rect. 2 10
48 32.32 wind 9.0 43200 > th dose independent rect. 19 4
63 32.38 humidity 70.0 14400 < th dose dependent rect. 18 1
68 32.39 wind 9.0 43200 > th dose dependent rect. 20 3
75 32.40 temperature 15.0 270 > th dose dependent rect. 3 20
76 32.41 humidity 60.0 14400 < th dose independent rect. 17 2
81 32.42 humidity 60.0 14400 > th dose independent rect. 18 1
91 32.45 temperature 30.0 14400 > th dose independent rect. 17 2
107 32.45 temperature 30.0 720 < th dose dependent sin 4 NA
109 32.46 temperature 30.0 14400 < th dose independent rect. 17 3
112 32.46 temperature 30.0 14400 < th dose independent rect. 17 13
118 32.47 temperature 30.0 14400 < th dose independent rect. 17 11
120 32.47 humidity 60.0 14400 < th dose independent rect. 17 15
131 32.49 humidity 60.0 14400 < th dose independent rect. 17 4
137 32.49 wind 9.0 43200 > th dose independent rect. 19 10
151 32.51 temperature 10.0 720 > th dose dependent sin 4 NA
153 32.51 wind 9.0 43200 > th dose dependent rect. 19 10
156 32.51 humidity 70.0 14400 < th dose dependent rect. 18 13
175 32.54 humidity 70.0 14400 < th dose independent rect. 19 12
184 32.54 humidity 70.0 14400 < th dose dependent rect. 18 4
213 32.56 temperature 10.0 720 > th dose dependent rect. 3 6
220 32.58 humidity 70.0 14400 < th dose independent rect. 19 1
235 32.60 wind 5.0 43200 > th dose dependent rect. 20 1
236 32.60 temperature 30.0 14400 > th dose dependent rect. 17 17
237 32.61 temperature 30.0 14400 > th dose independent sin 11 NA
244 32.63 temperature 30.0 14400 < th dose independent sin 11 NA
255 32.64 precipitation 0.1 43200 > th dose dependent rect. 17 4
284 32.67 radiation 10.0 14400 > th dose dependent rect. 17 1
313 32.68 precipitation 0.1 43200 > th dose dependent rect. 19 2
315 32.68 humidity 60.0 14400 < th dose dependent rect. 17 15
317 32.69 humidity 60.0 14400 > th dose independent rect. 17 15
322 32.70 humidity 60.0 14400 > th dose independent rect. 17 4
327 32.70 humidity 60.0 14400 > th dose independent rect. 17 13
367 32.72 humidity 60.0 14400 > th dose independent rect. 17 9
388 32.74 temperature 25.0 14400 > th dose dependent rect. 20 1
404 32.76 humidity 70.0 4320 > th dose independent rect. 19 12
414 32.77 temperature 30.0 270 < th dose dependent sin 1 NA
419 32.78 humidity 70.0 4320 > th dose independent rect. 19 4
437 32.80 temperature 30.0 720 < th dose dependent rect. 7 4
441 32.81 temperature 30.0 14400 > th dose dependent rect. 17 2
451 32.81 temperature 30.0 270 < th dose dependent rect. 7 10
488 32.86 humidity 70.0 4320 > th dose independent rect. 19 7
544 32.91 radiation 10.0 14400 < th dose independent rect. 17 1
546 32.92 precipitation 0.1 43200 > th dose independent rect. 19 2
551 32.93 precipitation 0.1 43200 < th dose independent rect. 19 2
554 32.93 precipitation 0.1 43200 < th dose dependent rect. 19 2
570 32.95 wind 5.0 43200 > th dose independent rect. 20 1
593 32.98 precipitation 0.1 43200 > th dose independent rect. 17 2
627 33.00 radiation 20.0 4320 < th dose independent rect. 15 17
631 33.00 radiation 20.0 4320 > th dose dependent rect. 15 17
636 33.01 wind 5.0 43200 < th dose independent rect. 20 1
637 33.01 precipitation 0.1 43200 < th dose independent rect. 17 2
641 33.01 precipitation 0.1 43200 < th dose dependent rect. 17 2
653 33.02 temperature 30.0 14400 > th dose dependent sin 11 NA
780 33.13 radiation 20.0 4320 > th dose dependent rect. 15 2
803 33.14 humidity 50.0 14400 > th dose independent rect. 16 17
807 33.14 radiation 1.0 43200 < th dose dependent rect. 20 5
848 33.16 wind 9.0 43200 > th dose dependent rect. 17 13
874 33.18 radiation 10.0 14400 < th dose independent rect. 17 4
882 33.18 temperature 25.0 720 > th dose independent rect. 5 10
894 33.18 temperature 30.0 720 < th dose dependent rect. 9 1
953 33.21 radiation 10.0 14400 < th dose independent rect. 17 11
955 33.21 humidity 50.0 14400 < th dose independent rect. 17 17
969 33.22 precipitation 0.1 43200 > th dose independent rect. 17 4
972 33.22 radiation 10.0 14400 < th dose independent rect. 17 9