Os07g0672500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : SMAD/FHA domain containing protein.
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Os07g0672500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : SMAD/FHA domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 31.08 | 0.262 | 11.6 | 0.0358 | 2.1 | 2.93 | 3.11 | 3.49 | 0.219 | 18.3 | 1.26 | 717 | -- | -- |
| 33.1 | 0.268 | 11.6 | 0.0604 | 1.49 | 2.22 | 0.518 | -- | 0.229 | 18.9 | 2.155 | 742 | -- | -- |
| 33.93 | 0.271 | 11.5 | 0.0756 | 1.81 | 2.57 | -- | -0.0398 | 0.252 | 18.5 | 2.234 | 721 | -- | -- |
| 33.68 | 0.27 | 11.5 | 0.0483 | 1.53 | 2.26 | -- | -- | 0.236 | 18.8 | 2.16 | 731 | -- | -- |
| 34.61 | 0.274 | 11.5 | 0.232 | -- | 1.44 | -- | -0.057 | 0.294 | -- | 2.13 | 1657 | -- | -- |
| 42.91 | 0.307 | 11.5 | -0.098 | 0.482 | -- | 0.344 | -- | 0.145 | 2.21 | -- | -- | -- | -- |
| 43.34 | 0.308 | 11.5 | -0.108 | 0.484 | -- | -- | -- | 0.143 | 2.32 | -- | -- | -- | -- |
| 32.97 | 0.267 | 11.5 | 0.0455 | -- | 1.17 | -- | -- | 0.258 | -- | 2.292 | 1678 | -- | -- |
| 33.72 | 0.27 | 11.5 | -- | 1.53 | 2.24 | -- | -- | 0.235 | 18.7 | 2.172 | 726 | -- | -- |
| 57.25 | 0.354 | 11.5 | -0.0875 | -- | -- | -- | -- | 0.154 | -- | -- | -- | -- | -- |
| 43.64 | 0.309 | 11.5 | -- | 0.482 | -- | -- | -- | 0.155 | 2.31 | -- | -- | -- | -- |
| 33.03 | 0.268 | 11.5 | -- | -- | 1.17 | -- | -- | 0.261 | -- | 2.364 | 1685 | -- | -- |
| 57.46 | 0.354 | 11.5 | -- | -- | -- | -- | -- | 0.164 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 28.85 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 2 | 29.02 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 4 | 29.12 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 18 | 4 |
| 6 | 29.15 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 10 | 5 |
| 10 | 29.16 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 13 | 2 |
| 13 | 29.18 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 17 | 5 |
| 24 | 29.27 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 11 | 4 |
| 27 | 29.29 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 32 | 29.29 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 33 | 29.29 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 19 | 1 |
| 44 | 29.35 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 52 | 29.37 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 14 | 1 |
| 63 | 29.40 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 7 | 9 |
| 68 | 29.41 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 17 | 4 |
| 139 | 29.46 | temperature | 25.0 | 14400 | > th | dose dependent | sin | 0 | NA |
| 254 | 29.55 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 263 | 29.55 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 11 | 14 |
| 271 | 29.55 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 11 | 22 |
| 353 | 29.58 | temperature | 25.0 | 14400 | > th | dose dependent | no | NA | NA |
| 465 | 29.71 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 13 | 3 |
| 471 | 29.72 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 506 | 29.77 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 524 | 29.81 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 9 | 9 |
| 536 | 29.83 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 14 | 2 |
| 568 | 29.87 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 571 | 29.87 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 593 | 29.88 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 6 | 4 |
| 651 | 29.90 | temperature | 25.0 | 14400 | > th | dose independent | sin | 5 | NA |
| 652 | 29.90 | humidity | 90.0 | 43200 | > th | dose independent | sin | 18 | NA |
| 655 | 29.90 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 3 | 8 |
| 657 | 29.90 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 1 | 11 |
| 695 | 29.91 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 3 | 8 |
| 744 | 29.92 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 6 | 4 |
| 790 | 29.93 | temperature | 25.0 | 14400 | < th | dose independent | sin | 5 | NA |
| 801 | 29.93 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 9 | 14 |
| 804 | 29.93 | humidity | 90.0 | 43200 | > th | dose dependent | sin | 18 | NA |
| 868 | 29.95 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 908 | 29.96 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 910 | 29.96 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 919 | 29.96 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 14 | 20 |
| 959 | 29.97 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 19 | 1 |
| 989 | 29.98 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 14 | 19 |