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Os05g0584600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : AAA ATPase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.5 (0.0359) R2 : 0.716
β1 : -1.64 (0.137) R2dD : 0.103 R2D : 0.00683
β2 : 2.83 (0.0883) R2dC : 0.661 R2C : 0.57
β3 : -2.34 (0.204) R2dE : 0.1 R2E : -0.0497
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.551 (0.0799) R2dN8 : 0.044 R2N8 : -0.0278
σ : 0.663
deviance : 202.41
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C
peak time of C : 2.74
E
wheather : radiation
threshold : 1.581
memory length : 1471
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
198.01 0.661 10.5 -1.91 2.82 -1.96 -0.381 2.51 -0.588 2.78 1.839 1466 -- --
202.35 0.663 10.5 -1.68 2.85 -2.41 -0.361 -- -0.575 2.75 1.363 1470 -- --
198.09 0.656 10.5 -1.9 2.76 -1.87 -- 2.58 -0.585 2.85 1.988 1450 -- --
202.41 0.663 10.5 -1.64 2.83 -2.34 -- -- -0.551 2.74 1.581 1471 -- --
557.75 1.11 10.4 -1.01 -- 1.08 -- -0.273 -0.136 -- 2.587 2755 -- --
259.66 0.755 10.4 -1.14 2.72 -- 0.05 -- -0.237 2.95 -- -- -- --
259.66 0.755 10.4 -1.14 2.72 -- -- -- -0.237 2.95 -- -- -- --
518.34 1.06 10.4 -1.09 -- 1.31 -- -- -0.166 -- 10 7706 -- --
264.22 0.757 10.5 -- 2.76 -1.57 -- -- -0.29 2.79 2.26 1470 -- --
684.61 1.22 10.4 -1.02 -- -- -- -- -0.167 -- -- -- -- --
293.89 0.802 10.4 -- 2.7 -- -- -- -0.111 2.94 -- -- -- --
549.6 1.1 10.4 -- -- 1.3 -- -- -0.0457 -- 10 7706 -- --
712.25 1.25 10.4 -- -- -- -- -- -0.0537 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 192.33 temperature 15 720 > th dose dependent rect. 17 7
10 195.72 humidity 70 1440 > th dose dependent rect. 8 5
14 196.38 humidity 80 1440 > th dose independent rect. 7 6
17 196.55 temperature 30 720 < th dose dependent rect. 16 9
20 196.90 humidity 80 1440 < th dose independent rect. 7 6
37 197.82 humidity 60 14400 < th dose dependent rect. 17 16
39 197.87 humidity 50 14400 < th dose dependent rect. 16 19
40 197.88 radiation 1 1440 < th dose dependent rect. 15 23
53 198.23 radiation 1 1440 > th dose independent rect. 7 23
54 198.26 radiation 1 1440 < th dose independent rect. 7 23
62 198.43 radiation 1 1440 < th dose dependent rect. 18 23
65 198.50 temperature 30 720 < th dose dependent rect. 17 4
70 198.62 temperature 15 720 > th dose dependent sin 16 NA
79 198.88 radiation 1 1440 < th dose independent rect. 15 23
80 198.96 radiation 1 1440 > th dose independent rect. 15 23
82 199.00 radiation 1 1440 < th dose dependent rect. 7 23
85 199.03 radiation 1 1440 < th dose dependent rect. 13 22
92 199.14 radiation 1 1440 < th dose dependent rect. 18 20
102 199.30 radiation 1 1440 > th dose independent rect. 15 15
111 199.53 humidity 50 14400 > th dose independent rect. 17 17
112 199.55 radiation 1 1440 < th dose independent rect. 15 15
119 199.70 humidity 70 1440 > th dose dependent rect. 11 1
124 199.75 radiation 1 1440 < th dose dependent rect. 24 20
131 199.77 radiation 1 1440 < th dose dependent rect. 4 23
135 199.80 radiation 1 1440 < th dose dependent no NA NA
138 199.80 radiation 1 1440 < th dose dependent rect. 2 23
141 199.81 radiation 1 1440 < th dose dependent rect. 4 21
148 199.83 radiation 1 1440 < th dose dependent rect. 2 18
154 199.85 radiation 1 1440 < th dose dependent rect. 4 16
182 199.97 radiation 1 1440 < th dose independent rect. 13 22
186 199.99 radiation 1 1440 > th dose independent rect. 13 22
216 200.20 temperature 30 720 < th dose dependent rect. 18 1
239 200.47 radiation 1 1440 < th dose independent rect. 5 22
243 200.51 radiation 1 1440 < th dose independent rect. 5 20
248 200.54 radiation 1 1440 < th dose independent rect. 5 15
253 200.56 radiation 1 1440 > th dose independent rect. 5 14
267 200.59 humidity 50 14400 > th dose independent rect. 16 19
274 200.64 radiation 1 1440 < th dose independent rect. 24 20
284 200.69 radiation 1 1440 < th dose independent rect. 2 23
288 200.70 radiation 1 1440 < th dose independent no NA NA
294 200.72 radiation 1 1440 < th dose independent rect. 2 18
314 200.77 radiation 1 1440 > th dose independent no NA NA
377 200.84 temperature 30 720 < th dose dependent sin 16 NA
381 200.87 radiation 1 1440 < th dose dependent sin 2 NA
410 201.35 radiation 1 1440 < th dose independent rect. 18 23
423 201.47 radiation 1 1440 < th dose dependent rect. 15 15
430 201.58 radiation 1 1440 > th dose independent rect. 18 23
474 201.87 humidity 70 14400 < th dose dependent rect. 18 14
480 202.00 humidity 60 14400 < th dose dependent rect. 17 3
499 202.08 humidity 90 720 > th dose dependent rect. 8 15
505 202.17 radiation 1 1440 > th dose independent sin 13 NA
506 202.17 radiation 1 1440 < th dose independent sin 13 NA
510 202.19 radiation 1 1440 < th dose dependent sin 13 NA
532 202.32 wind 5 43200 > th dose dependent rect. 18 3
539 202.40 humidity 70 14400 < th dose independent rect. 19 13
543 202.43 humidity 50 14400 < th dose independent rect. 16 19
601 203.00 humidity 60 14400 < th dose independent rect. 17 16
606 203.01 wind 5 43200 > th dose dependent rect. 19 1
609 203.04 radiation 1 1440 < th dose independent rect. 10 1
611 203.04 radiation 1 1440 < th dose dependent rect. 10 1
617 203.07 radiation 1 1440 < th dose independent sin 1 NA
624 203.09 radiation 1 1440 < th dose dependent rect. 23 15
632 203.12 radiation 1 1440 > th dose independent sin 0 NA
660 203.21 radiation 10 4320 < th dose independent rect. 19 10
665 203.23 radiation 1 1440 < th dose dependent rect. 2 12
671 203.27 radiation 1 1440 < th dose dependent rect. 4 10
675 203.29 temperature 15 1440 > th dose dependent rect. 11 1
694 203.46 humidity 60 14400 < th dose independent rect. 17 3
697 203.48 radiation 1 1440 < th dose independent rect. 7 20
704 203.52 wind 7 43200 < th dose independent rect. 18 3
706 203.53 radiation 1 1440 > th dose independent rect. 7 12
713 203.53 radiation 1 1440 < th dose independent rect. 7 18
723 203.57 radiation 1 1440 < th dose independent rect. 7 13
739 203.64 humidity 60 14400 > th dose independent rect. 18 9
777 203.80 humidity 60 14400 > th dose independent rect. 18 7
784 203.87 wind 7 43200 > th dose independent rect. 18 3
809 204.07 humidity 60 14400 > th dose independent rect. 18 3
861 204.33 humidity 80 1440 < th dose independent sin 3 NA
893 204.50 humidity 60 14400 < th dose independent rect. 18 1
935 204.75 radiation 1 1440 > th dose independent rect. 15 4
956 204.79 humidity 80 1440 > th dose independent sin 3 NA
979 204.89 radiation 1 1440 < th dose independent rect. 15 12
996 204.95 radiation 1 1440 < th dose independent rect. 15 10