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Os01g0683100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Katanin p60 ATPase-containing subunit (EC 3.6.4.3) (Katanin p60 subunit) (p60 katanin) (Atp60) (CAD ATPase) (Katanin 1) (BOTERO1 protein) (ECTOPIC ROOT HAIR 3 protein) (FAT ROOT protein) (FRAGILE FIBER 2 protein) (AtAAA1).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 29.58 | 0.256 | 11.3 | -0.206 | 0.536 | 0.406 | -0.16 | -0.299 | -0.0775 | 1.69 | 25.51 | 785 | -- | -- |
| 29.69 | 0.254 | 11.3 | -0.124 | 0.54 | 0.385 | -0.206 | -- | -0.0496 | 1.64 | 25.55 | 784 | -- | -- |
| 29.67 | 0.254 | 11.3 | -0.217 | 0.535 | 0.407 | -- | -0.365 | -0.0816 | 1.71 | 25.57 | 784 | -- | -- |
| 29.86 | 0.255 | 11.3 | -0.118 | 0.539 | 0.388 | -- | -- | -0.0497 | 1.68 | 25.54 | 784 | -- | -- |
| 43.8 | 0.308 | 11.3 | -0.208 | -- | 0.617 | -- | -0.339 | -0.0754 | -- | 25.58 | 909 | -- | -- |
| 34.37 | 0.275 | 11.3 | -0.0132 | 0.638 | -- | -0.226 | -- | 0.087 | 0.706 | -- | -- | -- | -- |
| 34.59 | 0.275 | 11.3 | -0.00475 | 0.639 | -- | -- | -- | 0.0881 | 0.715 | -- | -- | -- | -- |
| 43.8 | 0.308 | 11.3 | -0.178 | -- | 0.662 | -- | -- | -0.134 | -- | 25.59 | 937 | -- | -- |
| 30.21 | 0.256 | 11.3 | -- | 0.544 | 0.36 | -- | -- | -0.0281 | 1.59 | 25.5 | 780 | -- | -- |
| 60.11 | 0.362 | 11.3 | 0.0182 | -- | -- | -- | -- | 0.0995 | -- | -- | -- | -- | -- |
| 34.59 | 0.275 | 11.3 | -- | 0.639 | -- | -- | -- | 0.0886 | 0.715 | -- | -- | -- | -- |
| 44.58 | 0.311 | 11.3 | -- | -- | 0.624 | -- | -- | -0.102 | -- | 25.55 | 926 | -- | -- |
| 60.12 | 0.362 | 11.3 | -- | -- | -- | -- | -- | 0.0975 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 28.10 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 14 |
| 2 | 28.12 | temperature | 10 | 270 | > th | dose dependent | rect. | 15 | 14 |
| 4 | 28.18 | temperature | 20 | 720 | > th | dose dependent | rect. | 16 | 9 |
| 8 | 28.20 | temperature | 20 | 270 | > th | dose dependent | rect. | 15 | 15 |
| 10 | 28.24 | temperature | 20 | 720 | > th | dose dependent | rect. | 16 | 7 |
| 15 | 28.28 | temperature | 30 | 10 | < th | dose dependent | rect. | 20 | 6 |
| 17 | 28.28 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 8 |
| 36 | 28.42 | temperature | 25 | 720 | > th | dose dependent | sin | 12 | NA |
| 38 | 28.43 | temperature | 25 | 720 | > th | dose independent | rect. | 16 | 9 |
| 39 | 28.44 | temperature | 25 | 90 | < th | dose independent | rect. | 20 | 6 |
| 43 | 28.47 | temperature | 25 | 10 | < th | dose independent | rect. | 20 | 6 |
| 56 | 28.54 | temperature | 25 | 720 | < th | dose independent | rect. | 15 | 9 |
| 85 | 28.65 | temperature | 30 | 270 | < th | dose dependent | rect. | 17 | 9 |
| 87 | 28.66 | temperature | 25 | 720 | > th | dose independent | sin | 15 | NA |
| 91 | 28.67 | temperature | 20 | 90 | > th | dose dependent | rect. | 17 | 14 |
| 95 | 28.69 | temperature | 20 | 720 | > th | dose dependent | rect. | 17 | 2 |
| 116 | 28.75 | temperature | 25 | 720 | < th | dose independent | sin | 15 | NA |
| 144 | 28.79 | temperature | 20 | 90 | > th | dose dependent | sin | 12 | NA |
| 149 | 28.80 | temperature | 25 | 720 | < th | dose independent | rect. | 14 | 17 |
| 150 | 28.80 | temperature | 25 | 720 | > th | dose dependent | rect. | 21 | 2 |
| 314 | 29.10 | temperature | 25 | 10 | < th | dose independent | rect. | 16 | 10 |
| 319 | 29.11 | temperature | 25 | 720 | > th | dose independent | rect. | 17 | 2 |
| 322 | 29.11 | temperature | 25 | 10 | < th | dose independent | rect. | 18 | 8 |
| 367 | 29.17 | temperature | 10 | 90 | > th | dose dependent | sin | 12 | NA |
| 392 | 29.20 | temperature | 25 | 720 | > th | dose independent | rect. | 11 | 15 |
| 399 | 29.21 | temperature | 25 | 720 | > th | dose independent | rect. | 11 | 19 |
| 470 | 29.28 | temperature | 30 | 30 | < th | dose dependent | sin | 12 | NA |
| 478 | 29.29 | temperature | 30 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 584 | 29.39 | temperature | 30 | 270 | < th | dose dependent | rect. | 21 | 2 |
| 615 | 29.42 | humidity | 50 | 30 | > th | dose dependent | rect. | 2 | 10 |
| 625 | 29.43 | temperature | 30 | 720 | < th | dose dependent | sin | 17 | NA |
| 649 | 29.45 | humidity | 70 | 270 | > th | dose dependent | rect. | 24 | 12 |
| 713 | 29.51 | humidity | 50 | 270 | > th | dose dependent | rect. | 24 | 11 |
| 865 | 29.65 | temperature | 25 | 720 | < th | dose independent | rect. | 5 | 19 |
| 882 | 29.67 | humidity | 80 | 270 | > th | dose independent | rect. | 24 | 12 |
| 946 | 29.70 | humidity | 70 | 90 | > th | dose dependent | rect. | 2 | 13 |
| 952 | 29.71 | humidity | 70 | 720 | < th | dose independent | rect. | 18 | 13 |
