BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0163400 Os12g0163400|AK102298
(445 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0163400 Tubby family protein 832 0.0
Os05g0437900 Tubby family protein 592 e-169
Os01g0866800 Similar to F24P17.15 protein (Tubby-like prote... 573 e-163
Os04g0687900 Similar to T24D18.17 protein (Tubby-like prote... 559 e-159
Os08g0103300 Similar to Tubby-like protein 3 541 e-154
Os11g0163600 Tubby family protein 435 e-122
Os07g0667000 Similar to Tubby-like protein 3 429 e-120
Os03g0351400 Similar to Tubby-like protein 3 321 7e-88
Os05g0560400 Tubby family protein 295 4e-80
Os02g0705300 Tubby family protein 271 8e-73
Os05g0514300 Similar to Tubby-like protein 3 219 3e-57
Os01g0759100 Tubby family protein 178 6e-45
>Os12g0163400 Tubby family protein
Length = 445
Score = 832 bits (2150), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 406/445 (91%), Positives = 406/445 (91%)
Query: 1 MSFRSIVRDVRDGFGSLSRRGFEVRLVGHRRGRSHSAVHELRDGHXXXXXXDVVQSSCWA 60
MSFRSIVRDVRDGFGSLSRRGFEVRLVGHRRGRSHSAVHELRDGH DVVQSSCWA
Sbjct: 1 MSFRSIVRDVRDGFGSLSRRGFEVRLVGHRRGRSHSAVHELRDGHAAAAAADVVQSSCWA 60
Query: 61 NLPPELLRDVIERLEASEAAWPSRKNVVACAAVCRTWRDMCREIVKNPEFCGKITFPVSL 120
NLPPELLRDVIERLEASEAAWPSRKNVVACAAVCRTWRDMCREIVKNPEFCGKITFPVSL
Sbjct: 61 NLPPELLRDVIERLEASEAAWPSRKNVVACAAVCRTWRDMCREIVKNPEFCGKITFPVSL 120
Query: 121 KQPGPRNGAIQCFIKRDKSTQTYNLYLCLSSAVLVESGKFLLSAKRYSRATCTEYTIFMS 180
KQPGPRNGAIQCFIKRDKSTQTYNLYLCLSSAVLVESGKFLLSAKRYSRATCTEYTIFMS
Sbjct: 121 KQPGPRNGAIQCFIKRDKSTQTYNLYLCLSSAVLVESGKFLLSAKRYSRATCTEYTIFMS 180
Query: 181 ADNTSRSSNMYIGKLRSNLLGTKFVIYDTQPPCNTANVSQSGKTSRRFYSRKVSPKNPSS 240
ADNTSRSSNMYIGKLRSNLLGTKFVIYDTQPPCNTANVSQSGKTSRRFYSRKVSPKNPSS
Sbjct: 181 ADNTSRSSNMYIGKLRSNLLGTKFVIYDTQPPCNTANVSQSGKTSRRFYSRKVSPKNPSS 240
Query: 241 TYSIAQVSYELNVLGTRGPRRMNCVMHSIPASSLEAGGTVPCQPDSVLARSLDEXXXXXX 300
TYSIAQVSYELNVLGTRGPRRMNCVMHSIPASSLEAGGTVPCQPDSVLARSLDE
Sbjct: 241 TYSIAQVSYELNVLGTRGPRRMNCVMHSIPASSLEAGGTVPCQPDSVLARSLDESFGSIS 300
Query: 301 XXXXXXMDRSIRFSSSRYSDISVGGPMVGGQALGDSDESKERPLILRNKAPRWHEQLQCW 360
MDRSIRFSSSRYSDISVGGPMVGGQALGDSDESKERPLILRNKAPRWHEQLQCW
Sbjct: 301 FSKSSIMDRSIRFSSSRYSDISVGGPMVGGQALGDSDESKERPLILRNKAPRWHEQLQCW 360
Query: 361 CLNFKGRVTVASVKNFQLVXXXXXXXXXXXXXXXXXXXXXDHDKVILQFGKVAKDMFTMD 420
CLNFKGRVTVASVKNFQLV DHDKVILQFGKVAKDMFTMD
Sbjct: 361 CLNFKGRVTVASVKNFQLVAATQPAAGAPTPSQPAPPPPPDHDKVILQFGKVAKDMFTMD 420
Query: 421 YRYPLSAFQAFAICLSSFDTKLACE 445
YRYPLSAFQAFAICLSSFDTKLACE
Sbjct: 421 YRYPLSAFQAFAICLSSFDTKLACE 445
>Os05g0437900 Tubby family protein
Length = 445
Score = 592 bits (1526), Expect = e-169, Method: Compositional matrix adjust.
Identities = 299/453 (66%), Positives = 346/453 (76%), Gaps = 16/453 (3%)
Query: 1 MSFRSIVRDVRDGFGSLSRRGFEVRL------VGHRRGRSHSAVHELRDGHXXXXXXDVV 54
MSFRSIVRDVRD FGSLSRR FEV L GH RG+S S VHEL D ++
Sbjct: 1 MSFRSIVRDVRDSFGSLSRRSFEVTLAGLSGLTGHHRGKSQSTVHELCDADL------II 54
Query: 55 QSSCWANLPPELLRDVIERLEASEAAWPSRKNVVACAAVCRTWRDMCREIVKNPEFCGKI 114
Q S WA+LPPELLRDVI RLEASE+ WPSRK+VV+CAAVC+ WR+MC+EIV +PEFCGK+
Sbjct: 55 QESRWASLPPELLRDVIRRLEASESTWPSRKDVVSCAAVCKAWREMCKEIVLSPEFCGKL 114
Query: 115 TFPVSLKQPGPRNGAIQCFIKRDKSTQTYNLYLCLSSAVLVESGKFLLSAKRYSRATCTE 174
TFP+SLKQPGPR+G IQCFIKRDKS TY+LYLCLS+AVL +SGKFLLSAKR+ + TCTE
Sbjct: 115 TFPLSLKQPGPRDGMIQCFIKRDKSKSTYHLYLCLSTAVLADSGKFLLSAKRHRKTTCTE 174
Query: 175 YTIFMSADNTSRSSNMYIGKLRSNLLGTKFVIYDTQPPCNTANVSQSGKTSRRFYSRKVS 234
Y I M ADN SRSS+ YIGKLRSN LGTKF+IYDTQP N A + G++SRRF S+KVS
Sbjct: 175 YVISMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPSYNGAVIPPVGRSSRRFNSKKVS 234
Query: 235 PKNPSSTYSIAQVSYELNVLGTRGPRRMNCVMHSIPASSLEAGGTVPCQPDSVLARSLDE 294
PK PS +Y+IAQV+YELNVLGTRGPRRM+CVMHSIPASS+E GG VP QP+ ++ R+ +E
Sbjct: 235 PKMPSGSYNIAQVTYELNVLGTRGPRRMHCVMHSIPASSVEPGGIVPGQPEQIVPRAFEE 294
Query: 295 X-XXXXXXXXXXXMDRSIRFSSSRYSDISVGGPMVGGQALGDSD-ESKERPLILRNKAPR 352
MDRS+ FSSSR + + GG GD + ++KERPL+LRNKAPR
Sbjct: 295 SFRSTTSFSKSSIMDRSMDFSSSRDFSSARFSDIAGGTINGDEEGQNKERPLVLRNKAPR 354
Query: 353 WHEQLQCWCLNFKGRVTVASVKNFQLVXXXXXXXXXXXXXXXXXXXXXDHDKVILQFGKV 412
WHEQLQCWCLNF+GRVT+ASVKNFQL+ + DK+ILQFGKV
Sbjct: 355 WHEQLQCWCLNFRGRVTIASVKNFQLI--AAPAQPPAGAPTPSQPAPPEQDKIILQFGKV 412
Query: 413 AKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 445
AKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE
Sbjct: 413 AKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 445
>Os01g0866800 Similar to F24P17.15 protein (Tubby-like protein TULP9)
Length = 448
Score = 573 bits (1476), Expect = e-163, Method: Compositional matrix adjust.
Identities = 290/461 (62%), Positives = 340/461 (73%), Gaps = 29/461 (6%)
Query: 1 MSFRSIVRDVRDGFGSLSRRGFEVRL------VGHRRGRSHSAVHELRDGHXXXXXXDVV 54
MSFRSIVRDVRDGFGSLSRR FEV L GH +G++ S++ EL D ++
Sbjct: 1 MSFRSIVRDVRDGFGSLSRRSFEVTLASLYGLTGHHKGKTQSSLDELDDSPA------II 54
Query: 55 QSSCWANLPPELLRDVIERLEASEAAWPSRKNVVACAAVCRTWRDMCREIVKNPEFCGKI 114
S WA+LPPELLR+VI RLEA E+ WPSR+NVV AAVCRTWR+MC+E V +PEFCGK+
Sbjct: 55 PESRWASLPPELLREVIRRLEADESTWPSRRNVVCFAAVCRTWREMCKETVLSPEFCGKL 114
Query: 115 TFPVSLKQPGPRNGAIQCFIKRDKSTQTYNLYLCLSSAVLVESGKFLLSAKRYSRATCTE 174
TFPVS+KQPGPR+G IQC+IKR++S TY+LYLCLS+ V E GKF+L+AKR+ + TCTE
Sbjct: 115 TFPVSIKQPGPRDGMIQCYIKRNRSKSTYHLYLCLSNVVTAEGGKFVLAAKRHRKTTCTE 174
Query: 175 YTIFMSADNTSRSSNMYIGKLRSNLLGTKFVIYDTQPPCNTANVSQSGKTSRRFYSRKVS 234
YTI M + N SRSS IGKLRSN LGTKF+IYDTQPP N A V G+TS+RF S KVS
Sbjct: 175 YTISMVSGNISRSSRTNIGKLRSNFLGTKFIIYDTQPPYNGAVVPHVGRTSKRFNSTKVS 234
Query: 235 PKNPSSTYSIAQVSYELNVLGTRGPRRMNCVMHSIPASSLEAGGTVPCQPDSVLARSLD- 293
PK PS TY+IAQVSYELNVLGTRGPRRM C+MHSIPASS+E GG VP QP+ ++ R+L+
Sbjct: 235 PKVPSVTYNIAQVSYELNVLGTRGPRRMRCMMHSIPASSVEPGGIVPGQPEQIVPRALED 294
Query: 294 ---------EXXXXXXXXXXXXMDRSIRFSSSRYSDISVGGPMVGGQALGDSDESKERPL 344
+ MD S+ FSS+R+SDIS G ++GG D+ E KERPL
Sbjct: 295 SFRSTTSFSQSFRSTTSFSKSIMDPSMDFSSARFSDIS--GSIMGGD---DNGEIKERPL 349
Query: 345 ILRNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVXXXXXXXXXXXXXXXXXXXXXDHDK 404
+LRNK PRWHEQLQCWCLNF+GRVT+ASVKNFQLV D +K
Sbjct: 350 VLRNKPPRWHEQLQCWCLNFRGRVTIASVKNFQLV--AAPSPPPAGAPTPSQPGPADPEK 407
Query: 405 VILQFGKVAKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 445
VILQFGKVA+DMFTMDYRYPLSAFQAFAICLSSFDTKLACE
Sbjct: 408 VILQFGKVARDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 448
>Os04g0687900 Similar to T24D18.17 protein (Tubby-like protein TULP8)
Length = 462
Score = 559 bits (1441), Expect = e-159, Method: Compositional matrix adjust.
Identities = 288/469 (61%), Positives = 329/469 (70%), Gaps = 31/469 (6%)
Query: 1 MSFRSIVRDVRDGFGSLSRRGFEVRLVG---HRRGRSHSAVHELRDGHXXXXXXDVVQSS 57
MSFRSIVRD RD FG+LS+R FEV++ G RG+S EL D V Q S
Sbjct: 1 MSFRSIVRDFRDSFGTLSKRSFEVKISGFSGRHRGKSIGPSSELDDTPV------VAQQS 54
Query: 58 CWANLPPELLRDVIERLEASEAAWPSRKNVVACAAVCRTWRDMCREIVKNPEFCGKITFP 117
WA LPPELLRDV++RLE ++ WPSRK+VVACA+VC TWRDMC++IV+NPEFCGK+TFP
Sbjct: 55 KWAGLPPELLRDVMKRLEEDDSNWPSRKDVVACASVCTTWRDMCKDIVRNPEFCGKLTFP 114
Query: 118 VSLKQPGPRNGAIQCFIKRDKSTQTYNLYLCLSSAVLVESGKFLLSAKRYSRATCTEYTI 177
VSLKQPGPR+G IQCFIKRDKS TY+LYLCLSSAVL E+GKFLLSAKR R T T+Y I
Sbjct: 115 VSLKQPGPRDGVIQCFIKRDKSKLTYHLYLCLSSAVLDETGKFLLSAKRSRRTTHTDYII 174
Query: 178 FMSADNTSRSSNMYIGKLRSNLLGTKFVIYDTQPPCNTANVSQSGKTSRRFYSRKVSPKN 237
M + N SRSS+ YIGKLRSN LGTKF+IYDTQPP N + +TSRRF SRKVSPK
Sbjct: 175 SMDSKNISRSSSGYIGKLRSNFLGTKFIIYDTQPPYNARTLCSQERTSRRFSSRKVSPKV 234
Query: 238 PSSTYSIAQVSYELNVLGTRGPRRMNCVMHSIPASSLEAGGTVPCQPDSVLARSLDEX-- 295
P+ Y I QV+YELNVLGTRGPRRM C MHSIPAS++E GG VP QP +L R +E
Sbjct: 235 PTGCYPIVQVNYELNVLGTRGPRRMQCAMHSIPASAVEPGGIVPGQPKELLPRLFEESFR 294
Query: 296 XXXXXXXXXXXMDRSIRFSSSRYSDISVGGPMVGGQALGDSDE-SKERPLILRNKAPRWH 354
D S FSSSR+S+ GG + G + D D+ +KERPL+LRNKAPRWH
Sbjct: 295 SMATSFSKYSITDHSTDFSSSRFSEFG-GGALQGQEQEQDGDDVNKERPLVLRNKAPRWH 353
Query: 355 EQLQCWCLNFKGRVTVASVKNFQLVXXXXXXXXXXXXX------------------XXXX 396
EQLQCWCLNF+GRVTVASVKNFQL+
Sbjct: 354 EQLQCWCLNFRGRVTVASVKNFQLIAAAPQPSSGAASEPSQAGQAAQQQTQPSQPSSSSS 413
Query: 397 XXXXDHDKVILQFGKVAKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 445
+HD VILQFGKVAKDMFTMDYRYPLSAFQAFAICL+SFDTKLACE
Sbjct: 414 SSSSNHDTVILQFGKVAKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE 462
>Os08g0103300 Similar to Tubby-like protein 3
Length = 451
Score = 541 bits (1395), Expect = e-154, Method: Compositional matrix adjust.
Identities = 286/460 (62%), Positives = 327/460 (71%), Gaps = 24/460 (5%)
Query: 1 MSFRSIVRDVRDGFGSLSRRGFEVR------LVGHRRGRSHSAVHELRDGHXXXXXXDVV 54
MSFRSIVRDVRD FGSLSRR FEVR L GH RG+S ++ ELRD VV
Sbjct: 1 MSFRSIVRDVRDSFGSLSRRSFEVRISGLPGLSGHHRGKSLGSLSELRDRPV------VV 54
Query: 55 QSSCWANLPPELLRDVIERLEASEAAWPSRKNVVACAAVCRTWRDMCREIVKNPEFCGKI 114
S W LPPELLRDV++RLE E+ WPSRK+VVACAAVCRTWR++C++IV++PE CGK+
Sbjct: 55 DQSRWVGLPPELLRDVMKRLEEGESNWPSRKDVVACAAVCRTWREICKDIVQSPEICGKL 114
Query: 115 TFPVSLKQPGPRNGAIQCFIKRDKSTQTYNLYLCLSSAVLVESGKFLLSAKRYSRATCTE 174
TFPVSLKQPGPR+G IQCFIKRDKS TY LYLCLS AVL E+GKFLL+AKR RAT TE
Sbjct: 115 TFPVSLKQPGPRDGLIQCFIKRDKSKLTYYLYLCLSPAVLSENGKFLLAAKRNRRATSTE 174
Query: 175 YTIFMSADNTSRSSNMYIGKLRSNLLGTKFVIYDTQPPCNTANVSQSGKTSRRFYSRKVS 234
Y I + + N SRSSN Y+GK+RSN LGTKFV+YDTQPP N ++ SRR SR+VS
Sbjct: 175 YIISVDSKNISRSSNGYVGKMRSNFLGTKFVVYDTQPPYNAGSLMSCQHGSRRISSRRVS 234
Query: 235 PKNPSSTYSIAQVSYELNVLGTRGPRRMNCVMHSIPASSLEAGGTVPCQPDSVLARSLDE 294
PK P+ +Y IA V YELNVLGTRGPRRM C MHSIPAS+++ G VP QP+ +L +E
Sbjct: 235 PKLPTGSYPIAHVKYELNVLGTRGPRRMQCTMHSIPASAVDPEGVVPGQPEQLLPGPFEE 294
Query: 295 XXXXXXXXXXXX-MDRSIRFSSSRYSDISVGGPMVGGQALGDSDESKERPLILRNKAPRW 353
MDRS+ FSSSR+S+IS Q D E+KERPL+LRNK PRW
Sbjct: 295 SFRSTNTSSRFSFMDRSLDFSSSRFSEISGSA---NQQGEDDIPEAKERPLVLRNKVPRW 351
Query: 354 HEQLQCWCLNFKGRVTVASVKNFQLVXXXXXXXXXXXXXXXXXXXXX--------DHDKV 405
HEQLQCWCLNF+GRVTVASVKNFQL+ DH KV
Sbjct: 352 HEQLQCWCLNFRGRVTVASVKNFQLIAAASSESSQLEQQQQQQQQNHASSSSSASDHGKV 411
Query: 406 ILQFGKVAKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 445
ILQFGKV KDMFTMDYRYPLSAFQAFAICL+SFDTKLACE
Sbjct: 412 ILQFGKVGKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE 451
>Os11g0163600 Tubby family protein
Length = 317
Score = 435 bits (1119), Expect = e-122, Method: Compositional matrix adjust.
Identities = 219/318 (68%), Positives = 245/318 (77%), Gaps = 3/318 (0%)
Query: 130 IQCFIKRDKSTQTYNLYLCLSSAVLVESGKFLLSAKRYSRATCTEYTIFMSADNTSRSSN 189
+QCFI+RDKSTQTY LYL L SAVLV++GKFLLSAKR ATCTEY I M+A+N SRS+N
Sbjct: 1 MQCFIRRDKSTQTYYLYLSLGSAVLVDNGKFLLSAKRNWHATCTEYVISMNANNLSRSTN 60
Query: 190 MYIGKLRSNLLGTKFVIYDTQPPCNTANVSQSGKTSRRFYSRKVSPKNPSSTYSIAQVSY 249
IGKLRSN LGTKFVIYDT P N + SQSGKTSRRF S K + K+P STYSIA +SY
Sbjct: 61 TNIGKLRSNFLGTKFVIYDTHTPYNATSDSQSGKTSRRF-SNKGTAKHPCSTYSIANISY 119
Query: 250 ELNVLGTRGPRRMNCVMHSIPASSLEAGGTVPCQPDSVLARSLDEXXX-XXXXXXXXXMD 308
ELNV GTRGPRRM C+MHSIPASSLEAGGTVP QPDS+LA SL+E MD
Sbjct: 120 ELNVFGTRGPRRMCCLMHSIPASSLEAGGTVPSQPDSILAHSLNESSFRSVSFSKSSVMD 179
Query: 309 RSIRFSSSRYSDISVG-GPMVGGQALGDSDESKERPLILRNKAPRWHEQLQCWCLNFKGR 367
S+ FSS+++SDIS+G GP +GG+ L D +E KE PLIL+NKAPRWHEQLQCWCLNF+GR
Sbjct: 180 HSMHFSSAQFSDISIGDGPRIGGRVLSDDEECKETPLILQNKAPRWHEQLQCWCLNFRGR 239
Query: 368 VTVASVKNFQLVXXXXXXXXXXXXXXXXXXXXXDHDKVILQFGKVAKDMFTMDYRYPLSA 427
VTVASVKNFQL+ +HDKVILQFGKVAKDMFTMDY YPLSA
Sbjct: 240 VTVASVKNFQLIAATQPAAGAPTPSQPVPPPPPEHDKVILQFGKVAKDMFTMDYHYPLSA 299
Query: 428 FQAFAICLSSFDTKLACE 445
FQAFAI LSSFDTKLACE
Sbjct: 300 FQAFAISLSSFDTKLACE 317
>Os07g0667000 Similar to Tubby-like protein 3
Length = 406
Score = 429 bits (1104), Expect = e-120, Method: Compositional matrix adjust.
Identities = 222/445 (49%), Positives = 289/445 (64%), Gaps = 39/445 (8%)
Query: 1 MSFRSIVRDVRDGFGSLSRRGFEVRLVGHRRGRSHSAVHELRDGHXXXXXXDVVQSSCWA 60
MSFRS++++V+ G++SRRGF R R R +A E D V++ SCW
Sbjct: 1 MSFRSVIQEVKGEIGAISRRGFRSR--PGRVRRVAAAAEEPPDESSAAAL--VMRESCWT 56
Query: 61 NLPPELLRDVIERLEASEAAWPSRKNVVACAAVCRTWRDMCREIVKNPEFCGKITFPVSL 120
LPPELLR+V+ R+E SE WP R++VVACA VCR+WR + REIV+ PE G +TFP+SL
Sbjct: 57 QLPPELLREVLARVEESEGWWPRRRDVVACAGVCRSWRGIVREIVRTPEASGNLTFPISL 116
Query: 121 KQPGPRNGAIQCFIKRDKSTQTYNLYLCLSSAVLVESGKFLLSAKRYSRATCTEYTIFMS 180
KQPGPR+ ++CFI R+++TQTY LY+ L+ A L + GKFLL+A++ R TCTEY I +
Sbjct: 117 KQPGPRDAPMKCFIVRNRTTQTYYLYIGLTDA-LTDDGKFLLAARKCRRTTCTEYLISLD 175
Query: 181 ADNTSRSSNMYIGKLRSNLLGTKFVIYDTQPPCNTANVSQSGKTSRRFYSRKVSPKNPSS 240
++ S+ ++ Y+GKLRSN LGTKF IYD PP +V G+++R S +SP+ P+
Sbjct: 176 MNDISKRTDSYVGKLRSNFLGTKFTIYDAHPP-YAGDVISKGQSARVIGSNHLSPRIPAG 234
Query: 241 TYSIAQVSYELNVLGTRGPRRMNCVMHSIPASSLEAGGTVPCQPDSVLARSLDEXXXXXX 300
Y ++ +SYELNVLG+RGPRRM+C M SIP S++E GGT P Q + L+
Sbjct: 235 NYPVSHISYELNVLGSRGPRRMHCAMDSIPVSAIEQGGTAPTQTEFPLS------YHESF 288
Query: 301 XXXXXXMDRSIRFSSSRYSDISVGGPMVGGQALGDSDESKERPLILRNKAPRWHEQLQCW 360
+S+R ++S S ++ G SK L+L+NK+PRWHE LQCW
Sbjct: 289 TSIPFFKSKSVRANNSTASLLTQNG-------------SK---LVLKNKSPRWHEHLQCW 332
Query: 361 CLNFKGRVTVASVKNFQLVXXXXXXXXXXXXXXXXXXXXXDHDKVILQFGKVAKDMFTMD 420
CLNF GRVTVASVKNFQLV +HD VILQFGKV KDMFTMD
Sbjct: 333 CLNFHGRVTVASVKNFQLV-----------ASDESNPTNQEHDDVILQFGKVGKDMFTMD 381
Query: 421 YRYPLSAFQAFAICLSSFDTKLACE 445
YRYP+SAFQAFAICLSSFDTK+ACE
Sbjct: 382 YRYPISAFQAFAICLSSFDTKIACE 406
>Os03g0351400 Similar to Tubby-like protein 3
Length = 296
Score = 321 bits (823), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 165/324 (50%), Positives = 214/324 (66%), Gaps = 35/324 (10%)
Query: 122 QPGPRNGAIQCFIKRDKSTQTYNLYLCLSSAVLVESGKFLLSAKRYSRATCTEYTIFMSA 181
QPGPR+G ++CFI+R+++TQTY LY+ L+ A L + GKFLL+A++ + TCT+Y I +
Sbjct: 8 QPGPRDGTLKCFIRRNRTTQTYYLYIGLTEA-LADDGKFLLAARKCRKPTCTDYLISLDM 66
Query: 182 DNTSRSSNMYIGKLRSNLLGTKFVIYDTQPPCNTANVSQSGKTSRRFYSRKVSPKNPSST 241
+ S+ SN YIGKLRSN LGTKF +YD PP + A VS+S +++R +VSP+ P+
Sbjct: 67 SDMSKGSNTYIGKLRSNFLGTKFTVYDAHPPYDGAVVSKS-RSARVVGLNQVSPRVPAGN 125
Query: 242 YSIAQVSYELNVLGTRGPRRMNCVMHSIPASSLEAGGTVPCQPDSVLARSLDEXXXXXXX 301
Y ++ +SYELNVLG RGPRRMNC+M SIP S+++ GG P Q + L+ LD
Sbjct: 126 YPVSHISYELNVLGARGPRRMNCIMDSIPTSAVQEGGKAPTQTEFPLS-GLDSFP----- 179
Query: 302 XXXXXMDRSIRFSSSRYSDISVGGPMVGGQALGDSDESKERPLILRNKAPRWHEQLQCWC 361
SI F S+ + I + Q KE L+L+NK+PRWHEQLQCWC
Sbjct: 180 --------SISFFRSKSARIDSATSQLSTQ--------KEEKLVLKNKSPRWHEQLQCWC 223
Query: 362 LNFKGRVTVASVKNFQLVXXXXXXXXXXXXXXXXXXXXXDHDKVILQFGKVAKDMFTMDY 421
LNF+GRVTVASVKNFQLV + DKVILQFGK+ KD+FTMDY
Sbjct: 224 LNFRGRVTVASVKNFQLVASDENGPTNQ-----------EQDKVILQFGKIGKDLFTMDY 272
Query: 422 RYPLSAFQAFAICLSSFDTKLACE 445
RYP+SAFQ+FAICLSSFDTK+ACE
Sbjct: 273 RYPISAFQSFAICLSSFDTKIACE 296
>Os05g0560400 Tubby family protein
Length = 349
Score = 295 bits (756), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 165/385 (42%), Positives = 220/385 (57%), Gaps = 70/385 (18%)
Query: 62 LPPELLRDVIERLEASEAA-WPSRKNVVACAAVCRTWRDMCREIVKNPEFCGKITFPVSL 120
L PEL+ +V+ R+EAS WP+RK++V+CA VCR WR+ +V+ G+ITFP SL
Sbjct: 27 LLPELVEEVVRRVEASGGERWPARKDLVSCACVCRRWREAAAAVVRPLPESGRITFPSSL 86
Query: 121 KQPGPRNGAIQCFIKRDKSTQTYNLYLCLSSAVLVESGKFLLSAKRYSRATCTEYTIFMS 180
KQPGP++ IQCF+KR+K + LYL L + + + GKFL++A+R+ R TEY I +
Sbjct: 87 KQPGPKDFPIQCFVKRNKKKSMFYLYLGLLNGTM-DKGKFLMAARRFRRGPHTEYVISLD 145
Query: 181 ADNTSRSSNMYIGKLRSNLLGTKFVIYDTQPPCNTANVSQSGKTSR-----RFYSRKVSP 235
AD+ S+ SN Y+GKLRS+ GT F IYD QPP + A S + + R RF SR++ P
Sbjct: 146 ADDLSQGSNAYVGKLRSDFWGTNFKIYDNQPPYDDAKTSSTRSSQRFGSTHRFGSRRICP 205
Query: 236 KNPSSTYSIAQVSYELNVLGTRGPRRMNCVMHSIPASSLEAGGTVPCQPDSVLARSLDEX 295
+ + +++ Q+SY+ N+L +RGPRRM C ++E T +S+ +SL
Sbjct: 206 QISAGNFNVGQISYKYNLLKSRGPRRMFC--------TMECPSTQETWENSLKTKSL--- 254
Query: 296 XXXXXXXXXXXMDRSIRFSSSRYSDISVGGPMVGGQALGDSDESKERPLILRNKAPRWHE 355
+ G + +LRNKAPRWHE
Sbjct: 255 -----------------------------------RCTGTT--------VLRNKAPRWHE 271
Query: 356 QLQCWCLNFKGRVTVASVKNFQLVXXXXXXXXXXXXXXXXXXXXXDHDKVILQFGKVAKD 415
LQCWCLNF GRVTVASVKNFQLV D + VILQFGKV +
Sbjct: 272 HLQCWCLNFHGRVTVASVKNFQLV---------ATADPSHPDSVGDEETVILQFGKVDSN 322
Query: 416 MFTMDYRYPLSAFQAFAICLSSFDT 440
+FTMDYR PLSAFQAFAICLSSF+T
Sbjct: 323 IFTMDYRQPLSAFQAFAICLSSFET 347
>Os02g0705300 Tubby family protein
Length = 326
Score = 271 bits (693), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 149/303 (49%), Positives = 200/303 (66%), Gaps = 13/303 (4%)
Query: 1 MSFRSIVRDVR---DGFGSLSRRGFEVRLVGHRRGRSHS------AVHELRDGHXXXXXX 51
MS +SIVR++R DG GS+SRR + R G R G HS +
Sbjct: 1 MSLKSIVRELREMRDGIGSMSRRAADGRAGGGRGGSRHSWPVLWSEQQQPPQQQQLQRQE 60
Query: 52 DVVQSSCWANLPPELLRDVIERLEASEAAWPSRKNVVACAAVCRTWRDMCREIVKNPEFC 111
Q WANLPPELL DVI+R+EASEA WP+R+ VVACAAVCR+WR++ +E+VK E C
Sbjct: 61 HQQQQGRWANLPPELLLDVIQRVEASEATWPARRQVVACAAVCRSWREVTKEVVKTLEEC 120
Query: 112 GKITFPVSLKQPGPRNGAIQCFIKRDKSTQTYNLYLCLSSAVLVESGKFLLSAKRYSRAT 171
G+ITFP+SLKQPGPR +QCF++RD++T TY LYL LS ++ E+ K LL+A++ RAT
Sbjct: 121 GRITFPISLKQPGPREHPVQCFVRRDRATSTYLLYLGLSPSLHGENDKLLLAARKIRRAT 180
Query: 172 CTEYTIFMSADNTSRSSNMYIGKLRSNLLGTKFVIYDTQPPCNTANVSQSGKTSRRFYSR 231
T + I + +++ S SS+ Y+GKL+ N LGTKF I+D+QPPC+ + + + R F +
Sbjct: 181 RTSFVISLVSNDFSLSSSTYVGKLKPNFLGTKFTIFDSQPPCDAVVLPNNRPSKRHF--K 238
Query: 232 KVSPKNPSSTYSIAQVSYELNVLGTRGPRRMNCVMHSIPASSLEAGGTVPCQPDSVLARS 291
+VSP+ P Y++A VSYEL VL RGPRRM C MHSIPA ++ GG P P ++ S
Sbjct: 239 QVSPRLPLGNYNVATVSYELTVLRNRGPRRMQCTMHSIPALCIQEGGKAP-TPTGII-HS 296
Query: 292 LDE 294
LDE
Sbjct: 297 LDE 299
>Os05g0514300 Similar to Tubby-like protein 3
Length = 372
Score = 219 bits (558), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 104/206 (50%), Positives = 141/206 (68%), Gaps = 2/206 (0%)
Query: 59 WANLPPELLRDVIERLEASEAAWPSRKNVVACAAVCRTWRDMCREIVKNPEFCGKITFPV 118
W+ L PELL +++ R++A WP R++VVACA VCR WRD +V+ P CG+ITFP
Sbjct: 52 WSRLLPELLTEIMRRVDAGAERWPPRRDVVACACVCRRWRDAAVSVVRPPLECGRITFPS 111
Query: 119 SLKQPGPRNGAIQCFIKRDKSTQTYNLYLCLSSAVLVESGKFLLSAKRYSRATCTEYTIF 178
SLKQPGPR+ + CFI+R+K T+ LYL L+ A L + GKFLL+A+R+ TEY I
Sbjct: 112 SLKQPGPRDAPMHCFIRRNKKNSTFYLYLSLTQA-LTDKGKFLLAARRFRNGAHTEYIIS 170
Query: 179 MSADNTSRSSNMYIGKLRSNLLGTKFVIYDTQPPCNTANVSQSGKTSRRFYSRKVSPKNP 238
D+ SN Y+GKLRS+ LGTKF+IYD+QPP + A S+S ++SRRF S++++P
Sbjct: 171 YDCDDLFPGSNSYVGKLRSDFLGTKFIIYDSQPPYDGAKPSRS-QSSRRFASKQINPNVS 229
Query: 239 SSTYSIAQVSYELNVLGTRGPRRMNC 264
Y + QVSY+ N L +RGPRRM C
Sbjct: 230 GGNYEVGQVSYKFNFLKSRGPRRMQC 255
Score = 140 bits (352), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 70/107 (65%), Positives = 73/107 (68%), Gaps = 9/107 (8%)
Query: 339 SKERPLILRNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVXXXXXXXXXXXXXXXXXXX 398
S PL LRNKAPRWHE LQCWCLNF GRVTVASVKNFQLV
Sbjct: 275 STSSPLALRNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLV---------APAGTSDPWG 325
Query: 399 XXDHDKVILQFGKVAKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 445
D + VILQFGK+ D FTMDYR PLSAFQAFAICL+SF TKLACE
Sbjct: 326 IADEETVILQFGKIEDDAFTMDYRQPLSAFQAFAICLTSFGTKLACE 372
>Os01g0759100 Tubby family protein
Length = 368
Score = 178 bits (452), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 92/206 (44%), Positives = 128/206 (62%), Gaps = 2/206 (0%)
Query: 59 WANLPPELLRDVIERLEASEAAWPSRKNVVACAAVCRTWRDMCREIVKNPEFCGKITFPV 118
W+ L P+LL D++ +EA WP R++VVACA+VCR WRD+ +V+ P GKITFP
Sbjct: 51 WSALVPDLLADILRCVEAGSERWPPRRDVVACASVCRRWRDVAVAVVQPPLESGKITFPS 110
Query: 119 SLKQPGPRNGAIQCFIKRDKSTQTYNLYLCLSSAVLVESGKFLLSAKRYSRATCTEYTIF 178
SLKQPGPR+ +QCFIKR+K T+ LYL L+ L + KFLL+A+R R EY I
Sbjct: 111 SLKQPGPRDAPMQCFIKRNKKNSTFFLYLGLTQE-LTDDEKFLLAARRCRRGLHKEYAIT 169
Query: 179 MSADNTSRSSNMYIGKLRSNLLGTKFVIYDTQPPCNTANVSQSGKTSRRFYSRKVSPKNP 238
+++D S +G L+SN GTKF I D QPP A + S ++ R F ++ P
Sbjct: 170 INSDGLFHGSQSCVGNLKSNFTGTKFTIRDWQPPYEGAK-AFSSRSGRWFGNKHRCPLVS 228
Query: 239 SSTYSIAQVSYELNVLGTRGPRRMNC 264
+ + +VSY+ ++L RGPRRM+C
Sbjct: 229 TGDVEVGEVSYKYSLLRPRGPRRMSC 254
Score = 120 bits (302), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/138 (48%), Positives = 78/138 (56%), Gaps = 18/138 (13%)
Query: 311 IRFSSSRYSDISVGGPMVGGQALGDSD-----ESKERPLILRNKAPRWHEQLQCWCLNFK 365
+R R SV P++ G A+ D S L+L +K P WHE LQCWCLNF
Sbjct: 244 LRPRGPRRMSCSVQCPVLKGTAVDPQDGKRLSNSIPSSLVLNSKVPSWHEHLQCWCLNFH 303
Query: 366 GRVTVASVKNFQLVXXXXXXXXXXXXXXXXXXXXXDHDKVILQFGKVAKDMFTMDYRYPL 425
GRV VASVKNFQL+ V+LQFGK+ D+FTMDYR PL
Sbjct: 304 GRVMVASVKNFQLIAPVEPGEP-------------SDKTVVLQFGKIDDDVFTMDYRQPL 350
Query: 426 SAFQAFAICLSSFDTKLA 443
SAFQAFAICLS+F TKLA
Sbjct: 351 SAFQAFAICLSNFGTKLA 368
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.133 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,632,200
Number of extensions: 503645
Number of successful extensions: 1130
Number of sequences better than 1.0e-10: 12
Number of HSP's gapped: 1088
Number of HSP's successfully gapped: 16
Length of query: 445
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 341
Effective length of database: 11,605,545
Effective search space: 3957490845
Effective search space used: 3957490845
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 158 (65.5 bits)