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Os05g0437900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Tubby family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.4 (0.0185) R2 : 0.0708
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.229 (0.0389) R2dN8 : 0.0915 R2N8 : 0.0708
σ : 0.348
deviance : 55.53
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
16.86 0.193 11.5 -0.0418 0.379 -0.819 -0.0287 2.71 0.324 3.13 30 1253 -- --
17.18 0.193 11.4 0.487 0.368 -0.564 -0.0402 -- 0.212 3.07 28.9 1247 -- --
16.85 0.191 11.5 -0.0374 0.378 -0.822 -- 2.71 0.323 3.16 29.97 1239 -- --
17.18 0.193 11.4 0.489 0.363 -0.563 -- -- 0.212 3.19 28.9 1245 -- --
24.39 0.23 11.5 -0.0323 -- -0.85 -- 2.52 0.278 -- 29.7 1218 -- --
31.17 0.262 11.4 0.667 0.454 -- 0.0675 -- 0.294 2.73 -- -- -- --
31.18 0.261 11.4 0.665 0.454 -- -- -- 0.294 2.73 -- -- -- --
24.42 0.23 11.4 0.484 -- -0.63 -- -- 0.202 -- 28.84 1233 -- --
21.92 0.218 11.4 -- 0.376 -0.655 -- -- 0.129 3.25 26.9 2730 -- --
43.16 0.307 11.4 0.685 -- -- -- -- 0.305 -- -- -- -- --
42.85 0.306 11.4 -- 0.467 -- -- -- 0.22 2.74 -- -- -- --
28.86 0.25 11.4 -- -- -0.755 -- -- 0.0895 -- 26.68 2651 -- --
55.53 0.348 11.4 -- -- -- -- -- 0.229 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 15.89 radiation 30 14400 > th dose independent rect. 16 16
2 16.36 radiation 20 14400 < th dose dependent rect. 18 9
3 16.37 radiation 30 14400 > th dose independent rect. 7 1
24 16.41 radiation 10 14400 < th dose dependent rect. 18 7
27 16.44 radiation 10 14400 < th dose dependent rect. 18 1
43 16.52 radiation 10 1440 < th dose dependent rect. 18 9
60 16.66 radiation 1 14400 > th dose independent rect. 18 11
61 16.66 radiation 1 4320 < th dose independent rect. 18 11
64 16.67 radiation 1 1440 < th dose dependent rect. 18 7
69 16.70 radiation 1 14400 > th dose independent rect. 18 1
78 16.70 radiation 1 4320 < th dose independent rect. 18 9
85 16.73 radiation 1 14400 < th dose independent rect. 18 7
87 16.75 radiation 1 14400 < th dose independent rect. 18 1
90 16.75 wind 5 43200 > th dose dependent rect. 10 2
94 16.76 radiation 1 14400 < th dose independent rect. 18 5
96 16.76 radiation 1 1440 < th dose dependent rect. 18 1
124 16.82 radiation 30 14400 > th dose dependent rect. 15 17
126 16.83 wind 7 43200 < th dose independent rect. 9 3
127 16.83 wind 7 43200 < th dose independent rect. 5 8
129 16.83 wind 7 43200 < th dose independent rect. 24 14
135 16.84 wind 7 43200 < th dose independent rect. 2 12
144 16.86 radiation 30 14400 < th dose independent rect. 15 17
145 16.86 radiation 1 1440 < th dose dependent rect. 18 5
146 16.87 wind 5 43200 > th dose independent rect. 10 2
154 16.88 radiation 20 14400 > th dose dependent rect. 16 15
159 16.90 wind 7 43200 > th dose independent rect. 24 14
163 16.92 wind 7 43200 < th dose independent rect. 8 5
164 16.92 wind 7 43200 > th dose independent rect. 4 9
165 16.92 wind 7 43200 > th dose independent rect. 2 12
175 16.94 temperature 25 1440 > th dose dependent rect. 18 1
176 16.94 temperature 25 1440 > th dose dependent rect. 16 4
180 16.95 wind 5 43200 > th dose dependent rect. 5 9
185 16.96 radiation 1 14400 < th dose dependent rect. 18 13
193 16.98 radiation 1 14400 < th dose independent rect. 18 13
204 17.00 temperature 25 1440 > th dose dependent rect. 16 1
205 17.01 humidity 90 43200 > th dose independent rect. 22 1
219 17.02 wind 5 43200 > th dose dependent rect. 24 15
255 17.08 radiation 1 14400 > th dose independent rect. 18 20
257 17.08 humidity 90 43200 > th dose dependent rect. 22 1
275 17.10 humidity 90 43200 > th dose dependent rect. 17 6
292 17.11 humidity 90 43200 > th dose dependent rect. 15 9
295 17.12 radiation 1 14400 < th dose independent rect. 5 1
309 17.12 humidity 90 43200 > th dose dependent rect. 9 15
310 17.13 radiation 1 14400 > th dose independent rect. 5 1
318 17.13 radiation 1 14400 > th dose dependent rect. 17 12
320 17.13 humidity 90 43200 > th dose dependent rect. 11 13
324 17.14 humidity 90 43200 < th dose independent rect. 10 1
325 17.14 atmosphere 1005 43200 > th dose independent rect. 16 1
329 17.14 radiation 1 14400 < th dose independent rect. 18 20
331 17.14 radiation 1 14400 < th dose dependent sin 14 NA
351 17.15 temperature 25 720 > th dose dependent rect. 17 16
354 17.16 humidity 90 43200 > th dose independent rect. 9 2
370 17.16 temperature 25 1440 > th dose dependent rect. 15 17
379 17.17 radiation 1 14400 > th dose dependent rect. 17 2
431 17.21 temperature 25 1440 > th dose dependent sin 16 NA
471 17.23 wind 7 43200 < th dose independent sin 5 NA
491 17.24 radiation 1 14400 > th dose independent sin 11 NA
525 17.25 humidity 90 43200 > th dose independent rect. 8 16
577 17.27 wind 7 43200 > th dose independent sin 6 NA
656 17.29 radiation 1 14400 < th dose dependent rect. 6 13
679 17.30 humidity 90 43200 > th dose dependent sin 19 NA
708 17.30 radiation 1 14400 < th dose dependent rect. 6 21
713 17.31 radiation 1 14400 < th dose independent sin 10 NA
715 17.31 humidity 90 43200 > th dose independent rect. 18 1
717 17.31 radiation 1 14400 < th dose independent rect. 22 8
751 17.32 radiation 1 14400 < th dose independent rect. 24 6
771 17.32 radiation 1 14400 < th dose dependent rect. 4 15
781 17.32 radiation 1 14400 < th dose dependent rect. 2 21
791 17.33 radiation 1 14400 < th dose independent rect. 2 4
826 17.33 humidity 90 43200 > th dose dependent rect. 5 19
871 17.34 radiation 1 14400 < th dose dependent no NA NA
901 17.35 wind 5 43200 > th dose dependent sin 5 NA
918 17.36 humidity 90 43200 < th dose independent rect. 18 1
944 17.37 humidity 90 43200 > th dose independent rect. 15 8
967 17.38 atmosphere 1005 43200 < th dose independent rect. 16 1
971 17.38 humidity 90 43200 < th dose independent rect. 9 4
974 17.38 temperature 30 1440 > th dose independent rect. 14 5