Os01g0759100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Tubby family protein.
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Os01g0759100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Tubby family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 34.77 | 0.275 | 2.36 | -1.02 | 0.0932 | 58.8 | 0.2 | 124 | 0.03 | 11.1 | 15 | 90 | -- | -- |
| 36.14 | 0.282 | 2.87 | 0.0123 | 0.108 | 0.0225 | 0.0947 | -- | 0.0201 | 11.1 | 15 | 90 | -- | -- |
| 34.94 | 0.275 | 2.36 | -1.01 | 0.0934 | 58.8 | -- | 124 | 0.0309 | 10.9 | 15 | 88 | -- | -- |
| 35.41 | 0.279 | 2.87 | 0.0554 | 0.106 | -0.403 | -- | -- | 0.0305 | 11 | 15.43 | 2 | -- | -- |
| 35.47 | 0.277 | 2.36 | -1.02 | -- | 58.8 | -- | 124 | 0.0301 | -- | 15.01 | 91 | -- | -- |
| 36.14 | 0.282 | 2.87 | 0.0133 | 0.109 | -- | 0.0921 | -- | 0.0204 | 11.1 | -- | -- | -- | -- |
| 36.18 | 0.282 | 2.87 | 0.017 | 0.108 | -- | -- | -- | 0.0206 | 11 | -- | -- | -- | -- |
| 36.12 | 0.281 | 2.87 | 0.0537 | -- | -0.41 | -- | -- | 0.0299 | -- | 15.43 | 2 | -- | -- |
| 35.49 | 0.279 | 2.87 | -- | 0.106 | -0.375 | -- | -- | 0.024 | 11 | 15.4 | 7 | -- | -- |
| 36.9 | 0.284 | 2.87 | 0.0145 | -- | -- | -- | -- | 0.0198 | -- | -- | -- | -- | -- |
| 36.18 | 0.281 | 2.87 | -- | 0.108 | -- | -- | -- | 0.0188 | 11 | -- | -- | -- | -- |
| 36.19 | 0.281 | 2.87 | -- | -- | -0.382 | -- | -- | 0.0236 | -- | 15.6 | 3 | -- | -- |
| 36.91 | 0.284 | 2.87 | -- | -- | -- | -- | -- | 0.0182 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 33.46 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 6 | 1 |
| 3 | 33.55 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 6 | 1 |
| 4 | 33.59 | radiation | 10.0 | 30 | < th | dose independent | rect. | 6 | 1 |
| 5 | 33.61 | atmosphere | 1010.0 | 30 | < th | dose dependent | rect. | 6 | 1 |
| 6 | 33.64 | wind | 3.0 | 30 | > th | dose dependent | rect. | 6 | 1 |
| 10 | 33.97 | wind | 3.0 | 30 | > th | dose independent | rect. | 6 | 1 |
| 11 | 34.08 | wind | 7.0 | 1440 | < th | dose independent | rect. | 7 | 1 |
| 14 | 34.12 | temperature | 15.0 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 16 | 34.18 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 2 | 5 |
| 20 | 34.27 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 6 | 1 |
| 22 | 34.31 | wind | 7.0 | 30 | > th | dose independent | rect. | 19 | 18 |
| 28 | 34.41 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 6 | 1 |
| 32 | 34.46 | temperature | 25.0 | 90 | > th | dose independent | rect. | 5 | 2 |
| 34 | 34.48 | wind | 1.0 | 30 | < th | dose independent | rect. | 6 | 1 |
| 37 | 34.49 | radiation | 10.0 | 30 | < th | dose dependent | rect. | 6 | 1 |
| 38 | 34.50 | wind | 7.0 | 10 | > th | dose dependent | rect. | 19 | 18 |
| 44 | 34.53 | wind | 7.0 | 30 | < th | dose independent | rect. | 7 | 23 |
| 50 | 34.61 | temperature | 15.0 | 720 | > th | dose independent | rect. | 3 | 16 |
| 54 | 34.63 | temperature | 15.0 | 720 | > th | dose independent | rect. | 5 | 8 |
| 58 | 34.65 | temperature | 15.0 | 720 | > th | dose independent | rect. | 3 | 8 |
| 59 | 34.65 | temperature | 15.0 | 720 | > th | dose independent | rect. | 1 | 16 |
| 61 | 34.65 | wind | 9.0 | 720 | > th | dose dependent | rect. | 10 | 1 |
| 69 | 34.68 | humidity | 90.0 | 90 | > th | dose independent | rect. | 9 | 3 |
| 75 | 34.68 | humidity | 90.0 | 90 | > th | dose dependent | rect. | 9 | 2 |
| 92 | 34.69 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 7 | 5 |
| 100 | 34.70 | temperature | 15.0 | 720 | < th | dose independent | rect. | 1 | 1 |
| 102 | 34.70 | temperature | 20.0 | 30 | < th | dose independent | rect. | 9 | 3 |
| 109 | 34.70 | atmosphere | 1015.0 | 720 | < th | dose independent | rect. | 1 | 8 |
| 111 | 34.70 | temperature | 15.0 | 720 | < th | dose dependent | rect. | 1 | 1 |
| 112 | 34.70 | temperature | 20.0 | 90 | < th | dose dependent | rect. | 9 | 2 |
| 144 | 34.71 | temperature | 20.0 | 90 | < th | dose independent | rect. | 10 | 1 |
| 145 | 34.71 | temperature | 20.0 | 10 | < th | dose independent | rect. | 11 | 1 |
| 151 | 34.71 | humidity | 90.0 | 90 | > th | dose independent | rect. | 10 | 1 |
| 153 | 34.71 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 10 | 1 |
| 181 | 34.71 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 11 | 1 |
| 189 | 34.71 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 10 | 1 |
| 308 | 34.72 | wind | 9.0 | 270 | > th | dose dependent | rect. | 16 | 20 |
| 312 | 34.73 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 19 | 1 |
| 349 | 34.74 | temperature | 15.0 | 4320 | > th | dose independent | rect. | 12 | 1 |
| 350 | 34.74 | atmosphere | 1015.0 | 1440 | > th | dose independent | rect. | 14 | 1 |
| 353 | 34.74 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 14 | 2 |
| 357 | 34.74 | humidity | 90.0 | 10 | > th | dose independent | rect. | 9 | 3 |
| 369 | 34.74 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 14 | 4 |
| 387 | 34.74 | temperature | 15.0 | 720 | > th | dose independent | rect. | 23 | 8 |
| 405 | 34.74 | temperature | 20.0 | 30 | < th | dose dependent | sin | 1 | NA |
| 407 | 34.74 | wind | 7.0 | 10 | > th | dose dependent | rect. | 12 | 1 |
| 410 | 34.74 | atmosphere | 1015.0 | 1440 | > th | dose dependent | rect. | 14 | 1 |
| 416 | 34.74 | humidity | 90.0 | 10 | > th | dose dependent | rect. | 9 | 3 |
| 446 | 34.75 | temperature | 15.0 | 4320 | > th | dose independent | rect. | 15 | 1 |
| 468 | 34.75 | radiation | 1.0 | 270 | < th | dose independent | rect. | 9 | 3 |
| 526 | 34.75 | atmosphere | 1015.0 | 1440 | > th | dose dependent | rect. | 19 | 2 |
| 533 | 34.75 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 9 | 3 |
| 568 | 34.76 | temperature | 15.0 | 90 | > th | dose independent | sin | 0 | NA |
| 570 | 34.76 | temperature | 15.0 | 90 | > th | dose independent | sin | 6 | NA |
| 571 | 34.76 | temperature | 15.0 | 720 | < th | dose independent | sin | 5 | NA |
| 574 | 34.76 | atmosphere | 1015.0 | 1440 | > th | dose independent | rect. | 12 | 1 |
| 576 | 34.76 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 12 | 1 |
| 577 | 34.76 | radiation | 1.0 | 270 | < th | dose independent | rect. | 8 | 1 |
| 578 | 34.76 | radiation | 1.0 | 270 | < th | dose independent | rect. | 10 | 1 |
| 634 | 34.76 | atmosphere | 1015.0 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 637 | 34.76 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 8 | 1 |
| 638 | 34.76 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 10 | 1 |
| 695 | 34.76 | temperature | 20.0 | 30 | < th | dose dependent | rect. | 3 | 10 |
| 740 | 34.77 | temperature | 15.0 | 90 | > th | dose independent | no | NA | NA |
| 742 | 34.77 | temperature | 15.0 | 90 | < th | dose independent | sin | 7 | NA |
| 791 | 34.77 | temperature | 15.0 | 90 | < th | dose independent | no | NA | NA |
| 795 | 34.77 | temperature | 15.0 | 1440 | < th | dose independent | rect. | 9 | 1 |
| 803 | 34.77 | atmosphere | 1015.0 | 1440 | > th | dose independent | rect. | 1 | 1 |
| 913 | 34.77 | atmosphere | 1015.0 | 1440 | > th | dose independent | rect. | 16 | 5 |
| 918 | 34.77 | wind | 7.0 | 270 | > th | dose independent | rect. | 2 | 6 |