Os03g0351400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Tubby-like protein 3.
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Os03g0351400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Tubby-like protein 3.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 90.37 | 0.447 | 9.4 | -0.604 | 1.88 | 0.145 | -0.351 | 4.72 | -0.12 | 5.46 | 29.95 | 2801 | -- | -- |
| 90.76 | 0.444 | 9.55 | -1.4 | 2.01 | 0.656 | 0.0881 | -- | -0.357 | 5.19 | 29.2 | 6052 | -- | -- |
| 90.67 | 0.443 | 9.39 | -0.595 | 1.88 | 0.141 | -- | 4.74 | -0.119 | 5.47 | 29.91 | 2801 | -- | -- |
| 88.62 | 0.438 | 9.55 | -1.56 | 1.94 | 0.736 | -- | -- | -0.352 | 5.36 | 29.29 | 6027 | -- | -- |
| 272.82 | 0.769 | 9.39 | -0.462 | -- | 0.159 | -- | 5.59 | -0.0464 | -- | 30.1 | 2774 | -- | -- |
| 113.52 | 0.499 | 9.53 | -1.34 | 1.93 | -- | -0.224 | -- | -0.282 | 5.35 | -- | -- | -- | -- |
| 113.64 | 0.499 | 9.53 | -1.34 | 1.93 | -- | -- | -- | -0.281 | 5.36 | -- | -- | -- | -- |
| 270.82 | 0.766 | 9.53 | -1.53 | -- | 0.812 | -- | -- | -0.172 | -- | 30.2 | 5659 | -- | -- |
| 150.52 | 0.571 | 9.49 | -- | 1.97 | 0.573 | -- | -- | -0.117 | 5.3 | 29.8 | 6186 | -- | -- |
| 308.19 | 0.82 | 9.56 | -1.27 | -- | -- | -- | -- | -0.233 | -- | -- | -- | -- | -- |
| 160.94 | 0.593 | 9.5 | -- | 1.91 | -- | -- | -- | -0.132 | 5.39 | -- | -- | -- | -- |
| 329.17 | 0.845 | 9.49 | -- | -- | 0.626 | -- | -- | 0.0362 | -- | 30.5 | 5645 | -- | -- |
| 350.99 | 0.874 | 9.52 | -- | -- | -- | -- | -- | -0.0921 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 84.48 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 19 | 5 |
| 2 | 85.01 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 4 | 17 |
| 20 | 88.07 | wind | 9.0 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 22 | 88.17 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 23 | 88.18 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 10 | 4 |
| 44 | 88.46 | wind | 9.0 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 45 | 88.48 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 59 | 89.11 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 4 |
| 63 | 89.18 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 9 | 5 |
| 65 | 89.20 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 2 | 5 |
| 67 | 89.23 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 20 | 18 |
| 68 | 89.24 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 2 | 12 |
| 70 | 89.25 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 4 | 10 |
| 76 | 89.27 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 22 | 16 |
| 89 | 89.33 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 16 | 2 |
| 94 | 89.35 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 20 | 9 |
| 96 | 89.36 | temperature | 30.0 | 720 | < th | dose independent | rect. | 6 | 12 |
| 97 | 89.36 | temperature | 30.0 | 270 | < th | dose independent | rect. | 11 | 16 |
| 106 | 89.41 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 116 | 89.49 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 22 | 2 |
| 158 | 89.63 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 17 | 14 |
| 167 | 89.71 | temperature | 30.0 | 720 | < th | dose independent | rect. | 5 | 14 |
| 170 | 89.74 | temperature | 30.0 | 720 | < th | dose independent | rect. | 6 | 23 |
| 172 | 89.76 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 6 | 2 |
| 185 | 89.85 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 24 | 9 |
| 187 | 89.87 | temperature | 30.0 | 1440 | > th | dose independent | sin | 7 | NA |
| 193 | 89.90 | temperature | 30.0 | 1440 | < th | dose independent | sin | 8 | NA |
| 207 | 90.02 | temperature | 30.0 | 720 | < th | dose independent | rect. | 3 | 23 |
| 208 | 90.03 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 2 | 6 |
| 211 | 90.05 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 6 | 2 |
| 213 | 90.07 | temperature | 30.0 | 1440 | > th | dose dependent | rect. | 12 | 2 |
| 246 | 90.19 | temperature | 30.0 | 720 | < th | dose independent | sin | 0 | NA |
| 254 | 90.23 | temperature | 30.0 | 4320 | > th | dose independent | rect. | 14 | 1 |
| 272 | 90.25 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 3 | 5 |
| 276 | 90.26 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 14 | 2 |
| 288 | 90.33 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 17 | 4 |
| 292 | 90.35 | temperature | 30.0 | 720 | < th | dose independent | rect. | 6 | 19 |
| 294 | 90.37 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 299 | 90.39 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 301 | 90.39 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 17 | 7 |
| 308 | 90.42 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 19 | 1 |
| 314 | 90.45 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 316 | 90.45 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 333 | 90.46 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 341 | 90.49 | wind | 9.0 | 43200 | > th | dose independent | rect. | 20 | 5 |
| 367 | 90.59 | temperature | 30.0 | 720 | < th | dose independent | rect. | 1 | 23 |
| 368 | 90.59 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 377 | 90.62 | wind | 9.0 | 43200 | < th | dose independent | rect. | 20 | 5 |
| 387 | 90.64 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 10 | 8 |
| 391 | 90.65 | temperature | 30.0 | 720 | < th | dose independent | rect. | 6 | 17 |
| 409 | 90.66 | temperature | 30.0 | 720 | < th | dose independent | rect. | 9 | 9 |
| 421 | 90.71 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 19 | 13 |
| 425 | 90.72 | temperature | 30.0 | 720 | < th | dose independent | rect. | 9 | 23 |
| 455 | 90.77 | temperature | 30.0 | 720 | < th | dose independent | rect. | 11 | 23 |
| 500 | 90.81 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 505 | 90.83 | wind | 9.0 | 43200 | > th | dose independent | rect. | 20 | 8 |
| 532 | 90.86 | temperature | 30.0 | 1440 | > th | dose dependent | sin | 6 | NA |
| 554 | 90.89 | temperature | 30.0 | 270 | < th | dose independent | rect. | 20 | 21 |
| 613 | 90.99 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 642 | 91.00 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 730 | 91.09 | temperature | 30.0 | 1440 | > th | dose independent | no | NA | NA |
| 888 | 91.18 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 14 | 15 |
| 898 | 91.19 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 14 | 13 |
| 908 | 91.21 | temperature | 10.0 | 720 | > th | dose dependent | sin | 3 | NA |
| 989 | 91.30 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 9 | 14 |