FiT-DB / Search/ Help/ Sample detail

Os04g0687900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to T24D18.17 protein (Tubby-like protein TULP8).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.98 (0.0273) R2 : 0.784
β1 : -- (--) R2dD : -- R2D : --
β2 : 3.7 (0.0942) R2dC : 1.41 R2C : -0.257
β3 : -2.94 (0.0858) R2dE : 1.04 R2E : -0.624
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0129 (0.0572) R2dN8 : 7.35e-05 R2N8 : -0.00977
σ : 0.51
deviance : 120.14
__
_____
C
peak time of C : 20.6
E
wheather : radiation
threshold : 6.573
memory length : 170
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 9.31
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
106.87 0.486 9.99 -0.617 3.61 -2.69 0.867 0.29 -0.0552 20.4 2.089 128 9.16 --
106.34 0.48 9.99 -0.591 3.54 -2.71 1.2 -- -0.0335 20.5 2.052 146 9.27 --
107.52 0.483 9.99 -0.647 3.61 -2.72 -- 0.854 -0.0518 20.4 1.99 137 9.27 --
109.91 0.488 9.99 -0.654 3.53 -2.77 -- -- -0.0477 20.5 1.893 156 9.33 --
174.12 0.615 9.91 -0.478 -- -3.19 -- -0.636 -0.0345 -- 28.36 892 8.99 --
178.51 0.626 9.92 -0.516 2.65 -- 0.69 -- 0.047 17.3 -- -- -- --
179.67 0.628 9.91 -0.516 2.65 -- -- -- 0.0503 17.3 -- -- -- --
170.63 0.608 9.89 -0.613 -- -3.05 -- -- -0.124 -- 100.2 1058 9.87 --
120.14 0.51 9.98 -- 3.7 -2.94 -- -- 0.0129 20.6 6.573 170 9.31 --
547.14 1.09 9.88 -0.608 -- -- -- -- -0.016 -- -- -- -- --
186.7 0.639 9.9 -- 2.66 -- -- -- 0.108 17.3 -- -- -- --
178.52 0.622 9.87 -- -- -3.11 -- -- 0.00747 -- 117.3 1071 10 --
556.89 1.1 9.87 -- -- -- -- -- 0.0514 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 92.79 precipitation 0.1 270 < th dose independent rect. 17 19
2 92.79 precipitation 0.1 270 < th dose dependent rect. 17 19
3 92.85 wind 1.0 270 > th dose independent rect. 12 5
4 93.46 wind 9.0 270 < th dose independent rect. 12 5
5 94.27 atmosphere 995.0 270 > th dose independent rect. 17 19
6 94.56 temperature 10.0 270 > th dose independent rect. 12 5
8 94.56 atmosphere 1015.0 270 < th dose independent rect. 12 5
9 94.56 temperature 10.0 270 > th dose independent rect. 17 19
10 94.63 precipitation 0.1 270 < th dose independent rect. 12 5
11 94.63 precipitation 0.1 270 < th dose dependent rect. 12 5
14 94.88 wind 9.0 270 < th dose independent rect. 17 19
15 95.54 temperature 10.0 270 > th dose dependent rect. 12 18
19 96.42 temperature 10.0 270 > th dose dependent rect. 12 5
25 97.22 humidity 50.0 270 > th dose independent rect. 17 19
26 97.31 radiation 1.0 270 > th dose independent rect. 12 5
30 97.58 humidity 90.0 270 < th dose independent rect. 12 5
35 97.75 humidity 50.0 270 > th dose dependent rect. 22 10
60 98.87 atmosphere 995.0 270 > th dose independent rect. 12 5
63 99.00 radiation 1.0 270 > th dose independent rect. 4 8
84 99.94 radiation 1.0 270 > th dose independent rect. 12 7
105 100.19 temperature 10.0 270 > th dose dependent rect. 13 3
113 100.52 temperature 10.0 90 > th dose dependent rect. 14 18
124 101.15 wind 9.0 270 < th dose independent rect. 12 18
134 101.30 temperature 10.0 10 > th dose dependent rect. 14 19
141 101.49 temperature 15.0 270 > th dose independent rect. 6 6
147 101.79 precipitation 0.1 270 < th dose independent rect. 6 6
148 101.79 precipitation 0.1 270 < th dose dependent rect. 6 6
163 102.00 atmosphere 995.0 270 > th dose independent rect. 6 6
164 102.00 atmosphere 1015.0 270 < th dose independent rect. 6 6
165 102.00 temperature 10.0 270 > th dose independent rect. 12 18
167 102.23 wind 9.0 270 < th dose independent rect. 6 6
168 102.25 radiation 30.0 270 < th dose dependent rect. 16 9
175 102.61 atmosphere 995.0 270 > th dose independent rect. 13 3
178 102.82 radiation 10.0 270 < th dose independent rect. 16 9
198 103.49 wind 1.0 270 > th dose independent rect. 17 19
208 103.96 humidity 50.0 270 > th dose independent rect. 17 8
218 104.17 wind 9.0 270 < th dose independent rect. 1 16
221 104.32 temperature 30.0 270 < th dose independent rect. 17 18
237 104.56 temperature 20.0 270 > th dose independent rect. 12 18
238 104.59 wind 1.0 270 > th dose independent rect. 6 6
250 104.98 temperature 10.0 270 > th dose independent rect. 17 8
254 104.98 temperature 10.0 270 > th dose independent rect. 1 16
255 104.98 atmosphere 1015.0 270 < th dose independent rect. 1 16
258 105.03 radiation 40.0 90 < th dose independent rect. 13 6
264 105.08 precipitation 0.1 270 < th dose independent rect. 12 18
266 105.08 precipitation 0.1 270 < th dose dependent rect. 12 18
277 105.41 temperature 10.0 10 > th dose dependent rect. 14 6
278 105.43 wind 9.0 270 < th dose independent rect. 17 8
283 105.60 temperature 10.0 270 > th dose independent rect. 22 9
284 105.60 temperature 30.0 270 < th dose independent rect. 22 9
285 105.60 humidity 50.0 270 > th dose independent rect. 22 9
287 105.60 atmosphere 995.0 270 > th dose independent rect. 22 9
288 105.60 radiation 40.0 270 < th dose independent rect. 22 9
289 105.60 temperature 10.0 270 > th dose independent rect. 7 15
292 105.68 wind 9.0 270 < th dose independent rect. 22 9
293 105.69 atmosphere 995.0 270 > th dose independent rect. 17 8
296 105.73 temperature 20.0 270 > th dose independent rect. 8 3
312 106.04 humidity 50.0 270 > th dose independent rect. 6 6
313 106.05 wind 9.0 270 < th dose independent rect. 11 21
328 106.20 radiation 1.0 270 > th dose independent rect. 8 3
351 106.64 radiation 40.0 270 < th dose dependent rect. 22 10
355 106.79 precipitation 0.1 270 < th dose independent rect. 17 8
356 106.79 precipitation 0.1 270 < th dose dependent rect. 17 8
363 106.89 temperature 20.0 10 > th dose independent rect. 14 6
364 106.90 precipitation 0.1 270 < th dose independent rect. 8 3
365 106.90 precipitation 0.1 270 < th dose dependent rect. 8 3
371 106.97 wind 9.0 270 < th dose independent rect. 8 3
379 107.04 atmosphere 995.0 270 > th dose independent rect. 8 3
380 107.04 atmosphere 1015.0 270 < th dose independent rect. 8 3
381 107.04 temperature 10.0 270 > th dose independent rect. 11 21
383 107.07 precipitation 0.1 270 < th dose independent rect. 7 15
384 107.07 precipitation 0.1 270 < th dose dependent rect. 7 15
386 107.09 atmosphere 1015.0 270 < th dose independent rect. 12 18
408 107.41 temperature 30.0 270 < th dose independent rect. 17 8
447 107.71 atmosphere 1015.0 270 < th dose independent rect. 22 9
455 107.79 temperature 20.0 10 > th dose independent rect. 14 19
466 107.94 wind 1.0 270 > th dose independent rect. 17 8
470 107.96 precipitation 0.1 270 < th dose independent rect. 1 16
473 107.96 precipitation 0.1 270 < th dose dependent rect. 1 16
493 108.20 humidity 50.0 270 > th dose independent rect. 8 3
502 108.29 temperature 20.0 10 > th dose independent rect. 9 5
514 108.57 wind 9.0 270 < th dose independent rect. 7 15
515 108.58 temperature 20.0 270 > th dose independent rect. 9 1
528 108.76 precipitation 0.1 10 < th dose independent rect. 14 6
529 108.76 precipitation 0.1 10 < th dose dependent rect. 14 6
535 108.86 wind 1.0 10 > th dose independent rect. 14 6
536 108.91 wind 9.0 10 < th dose independent rect. 14 6
537 108.92 precipitation 0.1 270 < th dose independent rect. 22 9
539 108.92 precipitation 0.1 270 < th dose dependent rect. 22 9
546 109.09 temperature 10.0 10 > th dose independent rect. 14 6
548 109.09 atmosphere 1010.0 10 < th dose independent rect. 14 6
550 109.09 temperature 10.0 10 > th dose independent rect. 20 18
551 109.09 atmosphere 995.0 10 > th dose independent rect. 20 18
578 109.24 temperature 10.0 270 > th dose dependent rect. 22 9
579 109.26 wind 1.0 270 > th dose independent rect. 8 3
583 109.33 precipitation 0.1 10 < th dose independent rect. 20 18
584 109.33 precipitation 0.1 10 < th dose dependent rect. 20 18
587 109.39 wind 9.0 10 < th dose independent rect. 20 18
590 109.42 radiation 1.0 10 > th dose independent rect. 9 5
600 109.53 humidity 50.0 270 > th dose independent rect. 13 3
609 109.64 atmosphere 995.0 270 > th dose independent rect. 12 18
624 109.84 radiation 40.0 10 < th dose independent rect. 14 6
629 109.90 atmosphere 995.0 270 > th dose independent rect. 1 16
632 109.98 humidity 90.0 10 < th dose independent rect. 9 5
651 110.13 temperature 10.0 270 > th dose dependent rect. 6 6
695 110.52 wind 9.0 10 < th dose independent rect. 14 19
719 110.62 radiation 1.0 90 < th dose dependent sin 15 NA
720 110.63 humidity 90.0 90 < th dose independent rect. 19 18
726 110.67 temperature 10.0 10 > th dose independent rect. 9 5
728 110.67 atmosphere 995.0 10 > th dose independent rect. 9 5
729 110.67 atmosphere 1015.0 10 < th dose independent rect. 9 5
730 110.67 precipitation 0.1 10 < th dose independent rect. 9 5
731 110.67 temperature 10.0 10 > th dose independent rect. 14 19
733 110.67 precipitation 0.1 10 < th dose dependent rect. 9 5
749 110.73 radiation 1.0 270 > th dose independent rect. 9 1
769 111.02 wind 9.0 10 < th dose independent rect. 9 5
777 111.14 precipitation 0.1 270 < th dose independent rect. 9 1
778 111.14 precipitation 0.1 270 < th dose dependent rect. 9 1
782 111.17 radiation 40.0 10 < th dose independent rect. 14 19
786 111.20 wind 9.0 270 < th dose independent rect. 9 1
790 111.25 atmosphere 995.0 270 > th dose independent rect. 9 1
791 111.25 atmosphere 1015.0 270 < th dose independent rect. 9 1
792 111.25 temperature 10.0 270 > th dose independent rect. 10 23
794 111.27 wind 9.0 270 < th dose independent rect. 10 23
851 111.69 radiation 1.0 90 < th dose independent sin 15 NA
854 111.71 wind 1.0 270 > th dose dependent rect. 12 5
934 112.21 humidity 50.0 270 > th dose independent rect. 9 1