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Os12g0163400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Tubby family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.61 (0.0116) R2 : 0.775
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.838 (0.0302) R2dC : 0.392 R2C : 0.485
β3 : 1.11 (0.048) R2dE : 0.306 R2E : 0.376
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.056 (0.0257) R2dN8 : 0.00343 R2N8 : -0.0174
σ : 0.215
deviance : 21.41
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C
peak time of C : 7.14
E
wheather : temperature
threshold : 28.27
memory length : 63
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
20.98 0.215 9.61 0.0361 0.833 1.16 -0.192 0.325 0.0596 7.2 28.16 63 -- --
21.15 0.214 9.61 0.0732 0.832 1.15 -0.179 -- 0.0708 7.2 28.37 62 -- --
21.08 0.214 9.61 0.032 0.833 1.16 -- 0.323 0.0598 7.19 28.11 63 -- --
21.23 0.215 9.61 0.0862 0.832 1.15 -- -- 0.0724 7.19 28.29 63 -- --
44.89 0.312 9.61 0.209 -- 1.66 -- 0.0834 0.153 -- 30.36 316 -- --
39.44 0.294 9.66 -0.2 1.02 -- -0.00807 -- -0.173 5.92 -- -- -- --
39.44 0.294 9.66 -0.2 1.02 -- -- -- -0.173 5.92 -- -- -- --
44.9 0.312 9.61 0.219 -- 1.67 -- -- 0.159 -- 30.38 318 -- --
21.41 0.215 9.61 -- 0.838 1.11 -- -- 0.056 7.14 28.27 63 -- --
93.01 0.451 9.68 -0.17 -- -- -- -- -0.149 -- -- -- -- --
40.49 0.298 9.66 -- 1.01 -- -- -- -0.15 5.93 -- -- -- --
46.07 0.316 9.62 -- -- 1.59 -- -- 0.119 -- 30.5 314 -- --
93.77 0.452 9.67 -- -- -- -- -- -0.13 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 20.09 temperature 30 90 < th dose dependent rect. 11 22
3 20.55 temperature 30 30 < th dose dependent rect. 3 23
7 20.62 temperature 30 90 < th dose dependent rect. 13 22
11 21.11 temperature 30 30 < th dose dependent rect. 1 23
16 21.36 temperature 30 10 < th dose dependent rect. 13 23
18 21.58 temperature 30 90 < th dose dependent rect. 13 20
19 21.63 temperature 30 30 < th dose dependent rect. 21 23
20 21.64 temperature 30 90 < th dose dependent rect. 15 20
23 21.70 temperature 30 30 < th dose dependent no NA NA
25 21.72 temperature 30 30 < th dose dependent rect. 17 23
29 21.77 temperature 25 90 < th dose dependent rect. 23 23
31 21.79 temperature 30 30 < th dose dependent rect. 15 23
36 21.84 temperature 30 90 < th dose dependent rect. 15 18
50 22.23 temperature 10 270 > th dose dependent rect. 5 22
60 22.43 temperature 30 90 < th dose dependent rect. 17 16
66 22.48 temperature 30 30 < th dose dependent rect. 19 23
93 22.73 temperature 30 10 < th dose dependent rect. 3 21
141 22.96 temperature 25 30 < th dose dependent rect. 7 23
184 23.22 temperature 25 30 < th dose dependent rect. 5 23
238 23.44 temperature 10 30 > th dose dependent no NA NA
256 23.54 temperature 10 270 > th dose dependent rect. 16 23
297 23.66 temperature 15 10 > th dose dependent rect. 6 23
313 23.75 temperature 10 270 > th dose dependent sin 10 NA
316 23.76 temperature 30 270 < th dose dependent sin 10 NA
429 24.22 temperature 15 10 > th dose dependent rect. 9 23
455 24.34 temperature 15 90 > th dose dependent rect. 8 23
460 24.37 temperature 20 30 > th dose dependent rect. 9 19
463 24.38 temperature 15 10 > th dose dependent rect. 23 23
729 25.33 temperature 15 270 > th dose dependent rect. 22 13
804 25.56 temperature 20 10 > th dose dependent rect. 15 23
925 25.93 temperature 25 720 < th dose dependent rect. 7 16
965 26.05 temperature 25 270 < th dose independent rect. 9 23
993 26.14 temperature 10 720 > th dose dependent rect. 15 19