FiT-DB / Search/ Help/ Sample detail

Os05g0514300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Tubby-like protein 3.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13.2 (0.0178) R2 : 0.213
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.416 (0.0375) R2dN8 : 0.275 R2N8 : 0.213
σ : 0.335
deviance : 51.57
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
32.24 0.267 13.2 0.00871 0.526 0.325 -0.471 -0.48 0.346 2.68 20 97 -- --
33.1 0.268 13.2 0.0815 0.539 0.37 -0.27 -- 0.356 2.64 19.9 103 -- --
32.89 0.267 13.2 0.0482 0.531 0.343 -- -0.321 0.351 2.66 20 101 -- --
33.33 0.269 13.2 0.0878 0.534 0.374 -- -- 0.364 2.68 19.9 95 -- --
46.39 0.317 13.2 -0.0635 -- 0.38 -- -0.474 0.337 -- 18.44 2547 -- --
37.88 0.289 13.2 0.189 0.461 -- -0.272 -- 0.426 2.85 -- -- -- --
38.13 0.289 13.2 0.195 0.459 -- -- -- 0.428 2.82 -- -- -- --
46.58 0.318 13.2 -0.0261 -- 0.484 -- -- 0.357 -- 18.68 2510 -- --
33.53 0.27 13.2 -- 0.536 0.391 -- -- 0.353 2.65 20 95 -- --
50.35 0.332 13.2 0.215 -- -- -- -- 0.44 -- -- -- -- --
39.14 0.293 13.2 -- 0.463 -- -- -- 0.406 2.83 -- -- -- --
46.42 0.317 13.2 -- -- 0.537 -- -- 0.352 -- 18.14 2543 -- --
51.57 0.335 13.2 -- -- -- -- -- 0.416 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 30.33 temperature 20 10 > th dose independent rect. 20 9
2 30.39 temperature 20 270 > th dose independent rect. 18 9
6 30.65 temperature 20 90 > th dose independent rect. 9 19
10 30.84 temperature 20 270 > th dose independent rect. 7 20
19 31.06 temperature 20 30 > th dose independent rect. 20 16
20 31.07 temperature 20 10 > th dose independent rect. 20 18
27 31.15 temperature 20 90 > th dose independent rect. 17 23
36 31.23 temperature 20 30 > th dose independent rect. 22 14
39 31.23 temperature 20 10 > th dose independent rect. 10 19
47 31.30 temperature 20 270 > th dose independent rect. 18 18
52 31.33 temperature 20 10 > th dose independent rect. 20 20
56 31.36 temperature 20 10 > th dose independent rect. 22 16
109 31.70 temperature 20 90 > th dose independent sin 10 NA
110 31.70 temperature 20 90 < th dose independent sin 10 NA
124 31.77 temperature 20 90 < th dose independent rect. 16 19
148 31.87 temperature 20 90 < th dose independent rect. 16 15
154 31.89 temperature 20 90 < th dose independent rect. 11 22
164 31.95 temperature 20 270 < th dose independent rect. 10 20
166 31.95 temperature 20 90 < th dose independent rect. 13 22
216 32.10 temperature 20 90 < th dose independent rect. 16 23
231 32.14 temperature 20 90 < th dose independent rect. 19 16
243 32.16 temperature 15 270 > th dose dependent rect. 18 9
261 32.19 temperature 20 90 < th dose independent rect. 19 14
271 32.20 temperature 20 90 < th dose independent rect. 19 12
278 32.20 temperature 20 90 < th dose independent rect. 21 23
289 32.21 wind 7 43200 < th dose dependent rect. 5 3
312 32.23 temperature 20 30 > th dose independent rect. 20 23
322 32.25 temperature 20 90 > th dose independent no NA NA
325 32.25 temperature 20 90 < th dose independent no NA NA
352 32.27 temperature 20 90 < th dose independent rect. 19 23
353 32.27 wind 1 43200 > th dose dependent rect. 5 3
357 32.28 temperature 20 90 < th dose independent rect. 21 14
400 32.33 wind 3 43200 > th dose independent rect. 6 2
401 32.33 temperature 20 90 < th dose independent rect. 21 10
412 32.34 temperature 20 90 < th dose independent rect. 21 12
422 32.35 wind 3 43200 > th dose independent rect. 5 5
423 32.35 wind 3 43200 < th dose independent rect. 5 5
434 32.35 temperature 15 10 > th dose dependent rect. 20 9
437 32.36 wind 3 43200 < th dose independent rect. 6 2
448 32.36 temperature 20 90 > th dose independent rect. 13 23
461 32.38 wind 3 43200 > th dose independent rect. 4 9
491 32.40 temperature 20 90 < th dose independent rect. 5 23
507 32.41 wind 7 43200 < th dose dependent sin 6 NA
517 32.41 wind 9 43200 < th dose dependent rect. 20 12
521 32.42 wind 3 43200 < th dose independent rect. 3 10
540 32.43 humidity 80 43200 < th dose independent rect. 5 2
553 32.43 wind 1 43200 > th dose dependent rect. 20 12
569 32.44 temperature 20 90 < th dose independent rect. 1 23
593 32.45 wind 1 43200 > th dose dependent sin 5 NA
598 32.45 wind 1 43200 > th dose dependent rect. 4 10
634 32.48 radiation 20 1440 < th dose independent rect. 12 1
758 32.53 wind 3 43200 > th dose independent sin 5 NA
861 32.56 temperature 20 90 < th dose independent rect. 3 23
908 32.58 wind 3 43200 < th dose independent sin 6 NA
933 32.59 humidity 80 43200 > th dose independent rect. 4 3