Os01g0866800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to F24P17.15 protein (Tubby-like protein TULP9).
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Os01g0866800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to F24P17.15 protein (Tubby-like protein TULP9).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 63.61 | 0.375 | 10.4 | 0.503 | 0.865 | 0.828 | 0.812 | -1.57 | -0.0924 | 4.64 | 29.8 | 14 | -- | -- |
| 66.47 | 0.383 | 10.5 | 0.233 | 0.857 | 0.824 | 0.305 | -- | -0.169 | 4.55 | 29.8 | 14 | -- | -- |
| 64.84 | 0.378 | 10.5 | 0.417 | 0.875 | 0.8 | -- | -1.16 | -0.125 | 4.4 | 29.9 | 5 | -- | -- |
| 65.86 | 0.378 | 10.5 | 0.262 | 0.825 | 0.87 | -- | -- | -0.153 | 4.12 | 29.3 | 130 | -- | -- |
| 91.81 | 0.446 | 10.4 | 0.629 | -- | 1.63 | -- | -0.92 | 0.0498 | -- | 30.1 | 133 | -- | -- |
| 75.58 | 0.408 | 10.5 | 0.0374 | 1.1 | -- | 0.125 | -- | -0.331 | 3.91 | -- | -- | -- | -- |
| 75.62 | 0.407 | 10.5 | 0.0357 | 1.1 | -- | -- | -- | -0.332 | 3.88 | -- | -- | -- | -- |
| 92.17 | 0.447 | 10.5 | 0.463 | -- | 1.63 | -- | -- | 0.00221 | -- | 29.91 | 149 | -- | -- |
| 67.32 | 0.382 | 10.5 | -- | 0.876 | 0.752 | -- | -- | -0.207 | 4 | 29.32 | 151 | -- | -- |
| 142.19 | 0.557 | 10.5 | 0.0811 | -- | -- | -- | -- | -0.303 | -- | -- | -- | -- | -- |
| 75.66 | 0.407 | 10.5 | -- | 1.1 | -- | -- | -- | -0.336 | 3.88 | -- | -- | -- | -- |
| 97.35 | 0.46 | 10.5 | -- | -- | 1.49 | -- | -- | -0.0772 | -- | 30.08 | 140 | -- | -- |
| 142.37 | 0.557 | 10.5 | -- | -- | -- | -- | -- | -0.312 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 56.35 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 17 |
| 6 | 56.91 | temperature | 20 | 270 | > th | dose independent | rect. | 10 | 15 |
| 11 | 57.47 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 15 | 15 |
| 14 | 57.77 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 18 |
| 18 | 57.86 | temperature | 10 | 270 | > th | dose dependent | sin | 6 | NA |
| 21 | 58.00 | temperature | 15 | 270 | > th | dose dependent | rect. | 6 | 9 |
| 79 | 59.15 | temperature | 20 | 270 | > th | dose independent | rect. | 6 | 20 |
| 90 | 59.33 | temperature | 20 | 10 | > th | dose independent | rect. | 23 | 17 |
| 123 | 59.68 | temperature | 15 | 10 | > th | dose dependent | rect. | 23 | 18 |
| 125 | 59.69 | temperature | 10 | 270 | > th | dose dependent | rect. | 8 | 17 |
| 140 | 59.79 | temperature | 15 | 10 | > th | dose dependent | rect. | 1 | 16 |
| 209 | 60.23 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 8 |
| 229 | 60.33 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 253 | 60.48 | atmosphere | 1005 | 270 | > th | dose independent | sin | 13 | NA |
| 263 | 60.51 | atmosphere | 1000 | 90 | > th | dose dependent | rect. | 16 | 14 |
| 270 | 60.54 | temperature | 15 | 10 | > th | dose dependent | rect. | 21 | 21 |
| 287 | 60.62 | temperature | 20 | 10 | > th | dose independent | rect. | 21 | 20 |
| 325 | 60.74 | atmosphere | 1000 | 10 | > th | dose dependent | rect. | 17 | 15 |
| 360 | 60.87 | atmosphere | 1005 | 10 | > th | dose independent | rect. | 17 | 15 |
| 410 | 61.04 | temperature | 20 | 270 | > th | dose independent | rect. | 6 | 10 |
| 433 | 61.08 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 12 |
| 461 | 61.15 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 21 |
| 492 | 61.24 | temperature | 20 | 10 | > th | dose independent | rect. | 12 | 16 |
| 507 | 61.28 | atmosphere | 1005 | 720 | > th | dose independent | rect. | 15 | 10 |
| 521 | 61.32 | temperature | 20 | 10 | > th | dose independent | rect. | 1 | 15 |
| 592 | 61.46 | temperature | 20 | 270 | > th | dose independent | rect. | 19 | 7 |
| 617 | 61.48 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 14 | 19 |
| 650 | 61.58 | temperature | 20 | 10 | > th | dose independent | rect. | 10 | 18 |
| 658 | 61.60 | temperature | 20 | 270 | > th | dose independent | sin | 21 | NA |
| 684 | 61.65 | atmosphere | 1005 | 720 | > th | dose independent | rect. | 15 | 8 |
| 731 | 61.73 | atmosphere | 1005 | 720 | > th | dose independent | rect. | 11 | 15 |
| 754 | 61.80 | atmosphere | 1005 | 720 | > th | dose independent | sin | 17 | NA |
| 770 | 61.83 | temperature | 20 | 10 | > th | dose independent | sin | 21 | NA |
| 849 | 61.97 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 18 |
| 897 | 62.08 | atmosphere | 1015 | 270 | < th | dose dependent | rect. | 21 | 17 |
| 905 | 62.10 | temperature | 15 | 10 | > th | dose dependent | rect. | 7 | 11 |
| 923 | 62.15 | temperature | 20 | 720 | > th | dose independent | sin | 7 | NA |
| 941 | 62.18 | atmosphere | 1015 | 90 | < th | dose dependent | rect. | 23 | 16 |
| 981 | 62.25 | atmosphere | 1005 | 10 | > th | dose independent | sin | 12 | NA |