BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0866800 Os01g0866800|AK102221
(448 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0866800 Similar to F24P17.15 protein (Tubby-like prote... 835 0.0
Os05g0437900 Tubby family protein 674 0.0
Os08g0103300 Similar to Tubby-like protein 3 576 e-164
Os04g0687900 Similar to T24D18.17 protein (Tubby-like prote... 575 e-164
Os12g0163400 Tubby family protein 575 e-164
Os07g0667000 Similar to Tubby-like protein 3 410 e-114
Os11g0163600 Tubby family protein 373 e-103
Os03g0351400 Similar to Tubby-like protein 3 322 3e-88
Os02g0705300 Tubby family protein 261 7e-70
Os05g0514300 Similar to Tubby-like protein 3 219 4e-57
Os05g0560400 Tubby family protein 194 2e-49
Os01g0759100 Tubby family protein 185 6e-47
>Os01g0866800 Similar to F24P17.15 protein (Tubby-like protein TULP9)
Length = 448
Score = 835 bits (2158), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 408/448 (91%), Positives = 408/448 (91%)
Query: 1 MSFRSIVRDVRDGFGSLSRRSFEVTLASLYGLTGHHKGKTQSSLDELDDSPAIIPESRWA 60
MSFRSIVRDVRDGFGSLSRRSFEVTLASLYGLTGHHKGKTQSSLDELDDSPAIIPESRWA
Sbjct: 1 MSFRSIVRDVRDGFGSLSRRSFEVTLASLYGLTGHHKGKTQSSLDELDDSPAIIPESRWA 60
Query: 61 SLPPELLREVIRRLEADESTWPSRRNVVCFAAVCRTWREMCKETVLSPEFCGKLTFPVSI 120
SLPPELLREVIRRLEADESTWPSRRNVVCFAAVCRTWREMCKETVLSPEFCGKLTFPVSI
Sbjct: 61 SLPPELLREVIRRLEADESTWPSRRNVVCFAAVCRTWREMCKETVLSPEFCGKLTFPVSI 120
Query: 121 KQPGPRDGMIQCYIKRNRSKSTYHLYLCLSNVVTAEGGKFVLAAKRHRKTTCTEYTISMV 180
KQPGPRDGMIQCYIKRNRSKSTYHLYLCLSNVVTAEGGKFVLAAKRHRKTTCTEYTISMV
Sbjct: 121 KQPGPRDGMIQCYIKRNRSKSTYHLYLCLSNVVTAEGGKFVLAAKRHRKTTCTEYTISMV 180
Query: 181 SGNISRSSRTNIGKLRSNFLGTKFIIYDTQPPYNGAVVPHVGRTSKRFNSTKVSPKVPSV 240
SGNISRSSRTNIGKLRSNFLGTKFIIYDTQPPYNGAVVPHVGRTSKRFNSTKVSPKVPSV
Sbjct: 181 SGNISRSSRTNIGKLRSNFLGTKFIIYDTQPPYNGAVVPHVGRTSKRFNSTKVSPKVPSV 240
Query: 241 TYNIAQVSYELNVLGTRGPRRMRCMMHSIPASSVEPGGIVPGQPEQIVPRALEDXXXXXX 300
TYNIAQVSYELNVLGTRGPRRMRCMMHSIPASSVEPGGIVPGQPEQIVPRALED
Sbjct: 241 TYNIAQVSYELNVLGTRGPRRMRCMMHSIPASSVEPGGIVPGQPEQIVPRALEDSFRSTT 300
Query: 301 XXXXXXXXXXXXXXXIMDPSMDFSSARFSDISGSIMGGDDNGEIKERPLVLRNKPPRWHE 360
IMDPSMDFSSARFSDISGSIMGGDDNGEIKERPLVLRNKPPRWHE
Sbjct: 301 SFSQSFRSTTSFSKSIMDPSMDFSSARFSDISGSIMGGDDNGEIKERPLVLRNKPPRWHE 360
Query: 361 QLQCWCLNFRGRVTIASVKNFQLVXXXXXXXXXXXXXXXXXXXDPEKVILQFGKVARDMF 420
QLQCWCLNFRGRVTIASVKNFQLV DPEKVILQFGKVARDMF
Sbjct: 361 QLQCWCLNFRGRVTIASVKNFQLVAAPSPPPAGAPTPSQPGPADPEKVILQFGKVARDMF 420
Query: 421 TMDYRYPLSAFQAFAICLSSFDTKLACE 448
TMDYRYPLSAFQAFAICLSSFDTKLACE
Sbjct: 421 TMDYRYPLSAFQAFAICLSSFDTKLACE 448
>Os05g0437900 Tubby family protein
Length = 445
Score = 674 bits (1740), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/454 (74%), Positives = 372/454 (81%), Gaps = 15/454 (3%)
Query: 1 MSFRSIVRDVRDGFGSLSRRSFEVTLASLYGLTGHHKGKTQSSLDELDDSPAIIPESRWA 60
MSFRSIVRDVRD FGSLSRRSFEVTLA L GLTGHH+GK+QS++ EL D+ II ESRWA
Sbjct: 1 MSFRSIVRDVRDSFGSLSRRSFEVTLAGLSGLTGHHRGKSQSTVHELCDADLIIQESRWA 60
Query: 61 SLPPELLREVIRRLEADESTWPSRRNVVCFAAVCRTWREMCKETVLSPEFCGKLTFPVSI 120
SLPPELLR+VIRRLEA ESTWPSR++VV AAVC+ WREMCKE VLSPEFCGKLTFP+S+
Sbjct: 61 SLPPELLRDVIRRLEASESTWPSRKDVVSCAAVCKAWREMCKEIVLSPEFCGKLTFPLSL 120
Query: 121 KQPGPRDGMIQCYIKRNRSKSTYHLYLCLSNVVTAEGGKFVLAAKRHRKTTCTEYTISMV 180
KQPGPRDGMIQC+IKR++SKSTYHLYLCLS V A+ GKF+L+AKRHRKTTCTEY ISM
Sbjct: 121 KQPGPRDGMIQCFIKRDKSKSTYHLYLCLSTAVLADSGKFLLSAKRHRKTTCTEYVISMD 180
Query: 181 SGNISRSSRTNIGKLRSNFLGTKFIIYDTQPPYNGAVVPHVGRTSKRFNSTKVSPKVPSV 240
+ NISRSS T IGKLRSNFLGTKFIIYDTQP YNGAV+P VGR+S+RFNS KVSPK+PS
Sbjct: 181 ADNISRSSSTYIGKLRSNFLGTKFIIYDTQPSYNGAVIPPVGRSSRRFNSKKVSPKMPSG 240
Query: 241 TYNIAQVSYELNVLGTRGPRRMRCMMHSIPASSVEPGGIVPGQPEQIVPRALEDXXXXXX 300
+YNIAQV+YELNVLGTRGPRRM C+MHSIPASSVEPGGIVPGQPEQIVPRA E+
Sbjct: 241 SYNIAQVTYELNVLGTRGPRRMHCVMHSIPASSVEPGGIVPGQPEQIVPRAFEE------ 294
Query: 301 XXXXXXXXXXXXXXXIMDPSM------DFSSARFSDISGSIMGGDDNGEIKERPLVLRNK 354
IMD SM DFSSARFSDI+G + GD+ G+ KERPLVLRNK
Sbjct: 295 ---SFRSTTSFSKSSIMDRSMDFSSSRDFSSARFSDIAGGTINGDEEGQNKERPLVLRNK 351
Query: 355 PPRWHEQLQCWCLNFRGRVTIASVKNFQLVXXXXXXXXXXXXXXXXXXXDPEKVILQFGK 414
PRWHEQLQCWCLNFRGRVTIASVKNFQL+ + +K+ILQFGK
Sbjct: 352 APRWHEQLQCWCLNFRGRVTIASVKNFQLIAAPAQPPAGAPTPSQPAPPEQDKIILQFGK 411
Query: 415 VARDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 448
VA+DMFTMDYRYPLSAFQAFAICLSSFDTKLACE
Sbjct: 412 VAKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 445
>Os08g0103300 Similar to Tubby-like protein 3
Length = 451
Score = 576 bits (1484), Expect = e-164, Method: Compositional matrix adjust.
Identities = 291/460 (63%), Positives = 342/460 (74%), Gaps = 21/460 (4%)
Query: 1 MSFRSIVRDVRDGFGSLSRRSFEVTLASLYGLTGHHKGKTQSSLDELDDSPAIIPESRWA 60
MSFRSIVRDVRD FGSLSRRSFEV ++ L GL+GHH+GK+ SL EL D P ++ +SRW
Sbjct: 1 MSFRSIVRDVRDSFGSLSRRSFEVRISGLPGLSGHHRGKSLGSLSELRDRPVVVDQSRWV 60
Query: 61 SLPPELLREVIRRLEADESTWPSRRNVVCFAAVCRTWREMCKETVLSPEFCGKLTFPVSI 120
LPPELLR+V++RLE ES WPSR++VV AAVCRTWRE+CK+ V SPE CGKLTFPVS+
Sbjct: 61 GLPPELLRDVMKRLEEGESNWPSRKDVVACAAVCRTWREICKDIVQSPEICGKLTFPVSL 120
Query: 121 KQPGPRDGMIQCYIKRNRSKSTYHLYLCLSNVVTAEGGKFVLAAKRHRKTTCTEYTISMV 180
KQPGPRDG+IQC+IKR++SK TY+LYLCLS V +E GKF+LAAKR+R+ T TEY IS+
Sbjct: 121 KQPGPRDGLIQCFIKRDKSKLTYYLYLCLSPAVLSENGKFLLAAKRNRRATSTEYIISVD 180
Query: 181 SGNISRSSRTNIGKLRSNFLGTKFIIYDTQPPYNGAVVPHVGRTSKRFNSTKVSPKVPSV 240
S NISRSS +GK+RSNFLGTKF++YDTQPPYN + S+R +S +VSPK+P+
Sbjct: 181 SKNISRSSNGYVGKMRSNFLGTKFVVYDTQPPYNAGSLMSCQHGSRRISSRRVSPKLPTG 240
Query: 241 TYNIAQVSYELNVLGTRGPRRMRCMMHSIPASSVEPGGIVPGQPEQIVPRALEDXXXXXX 300
+Y IA V YELNVLGTRGPRRM+C MHSIPAS+V+P G+VPGQPEQ++P E+
Sbjct: 241 SYPIAHVKYELNVLGTRGPRRMQCTMHSIPASAVDPEGVVPGQPEQLLPGPFEESFRSTN 300
Query: 301 XXXXXXXXXXXXXXXIMDPSMDFSSARFSDISGSI--MGGDDNGEIKERPLVLRNKPPRW 358
MD S+DFSS+RFS+ISGS G DD E KERPLVLRNK PRW
Sbjct: 301 TSSRFS---------FMDRSLDFSSSRFSEISGSANQQGEDDIPEAKERPLVLRNKVPRW 351
Query: 359 HEQLQCWCLNFRGRVTIASVKNFQLVXXXXXXXXXXXXXXXXXXX----------DPEKV 408
HEQLQCWCLNFRGRVT+ASVKNFQL+ D KV
Sbjct: 352 HEQLQCWCLNFRGRVTVASVKNFQLIAAASSESSQLEQQQQQQQQNHASSSSSASDHGKV 411
Query: 409 ILQFGKVARDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 448
ILQFGKV +DMFTMDYRYPLSAFQAFAICL+SFDTKLACE
Sbjct: 412 ILQFGKVGKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE 451
>Os04g0687900 Similar to T24D18.17 protein (Tubby-like protein TULP8)
Length = 462
Score = 575 bits (1483), Expect = e-164, Method: Compositional matrix adjust.
Identities = 288/473 (60%), Positives = 341/473 (72%), Gaps = 36/473 (7%)
Query: 1 MSFRSIVRDVRDGFGSLSRRSFEVTLASLYGLTGHHKGKTQSSLDELDDSPAIIPESRWA 60
MSFRSIVRD RD FG+LS+RSFEV ++ G +G H+GK+ ELDD+P + +S+WA
Sbjct: 1 MSFRSIVRDFRDSFGTLSKRSFEVKIS---GFSGRHRGKSIGPSSELDDTPVVAQQSKWA 57
Query: 61 SLPPELLREVIRRLEADESTWPSRRNVVCFAAVCRTWREMCKETVLSPEFCGKLTFPVSI 120
LPPELLR+V++RLE D+S WPSR++VV A+VC TWR+MCK+ V +PEFCGKLTFPVS+
Sbjct: 58 GLPPELLRDVMKRLEEDDSNWPSRKDVVACASVCTTWRDMCKDIVRNPEFCGKLTFPVSL 117
Query: 121 KQPGPRDGMIQCYIKRNRSKSTYHLYLCLSNVVTAEGGKFVLAAKRHRKTTCTEYTISMV 180
KQPGPRDG+IQC+IKR++SK TYHLYLCLS+ V E GKF+L+AKR R+TT T+Y ISM
Sbjct: 118 KQPGPRDGVIQCFIKRDKSKLTYHLYLCLSSAVLDETGKFLLSAKRSRRTTHTDYIISMD 177
Query: 181 SGNISRSSRTNIGKLRSNFLGTKFIIYDTQPPYNGAVVPHVGRTSKRFNSTKVSPKVPSV 240
S NISRSS IGKLRSNFLGTKFIIYDTQPPYN + RTS+RF+S KVSPKVP+
Sbjct: 178 SKNISRSSSGYIGKLRSNFLGTKFIIYDTQPPYNARTLCSQERTSRRFSSRKVSPKVPTG 237
Query: 241 TYNIAQVSYELNVLGTRGPRRMRCMMHSIPASSVEPGGIVPGQPEQIVPRALEDXXXXXX 300
Y I QV+YELNVLGTRGPRRM+C MHSIPAS+VEPGGIVPGQP++++PR E+
Sbjct: 238 CYPIVQVNYELNVLGTRGPRRMQCAMHSIPASAVEPGGIVPGQPKELLPRLFEE------ 291
Query: 301 XXXXXXXXXXXXXXXIMDPSMDFSSARFSDISGSIMGG-----DDNGEIKERPLVLRNKP 355
I D S DFSS+RFS+ G + G D + KERPLVLRNK
Sbjct: 292 --SFRSMATSFSKYSITDHSTDFSSSRFSEFGGGALQGQEQEQDGDDVNKERPLVLRNKA 349
Query: 356 PRWHEQLQCWCLNFRGRVTIASVKNFQLVXXXXXXXXXXXXX------------------ 397
PRWHEQLQCWCLNFRGRVT+ASVKNFQL+
Sbjct: 350 PRWHEQLQCWCLNFRGRVTVASVKNFQLIAAAPQPSSGAASEPSQAGQAAQQQTQPSQPS 409
Query: 398 --XXXXXXDPEKVILQFGKVARDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 448
+ + VILQFGKVA+DMFTMDYRYPLSAFQAFAICL+SFDTKLACE
Sbjct: 410 SSSSSSSSNHDTVILQFGKVAKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE 462
>Os12g0163400 Tubby family protein
Length = 445
Score = 575 bits (1483), Expect = e-164, Method: Compositional matrix adjust.
Identities = 292/461 (63%), Positives = 342/461 (74%), Gaps = 29/461 (6%)
Query: 1 MSFRSIVRDVRDGFGSLSRRSFEVTLASLYGLTGHHKGKTQSSLDELDDSPA------II 54
MSFRSIVRDVRDGFGSLSRR FEV L GH +G++ S++ EL D A ++
Sbjct: 1 MSFRSIVRDVRDGFGSLSRRGFEVRL------VGHRRGRSHSAVHELRDGHAAAAAADVV 54
Query: 55 PESRWASLPPELLREVIRRLEADESTWPSRRNVVCFAAVCRTWREMCKETVLSPEFCGKL 114
S WA+LPPELLR+VI RLEA E+ WPSR+NVV AAVCRTWR+MC+E V +PEFCGK+
Sbjct: 55 QSSCWANLPPELLRDVIERLEASEAAWPSRKNVVACAAVCRTWRDMCREIVKNPEFCGKI 114
Query: 115 TFPVSIKQPGPRDGMIQCYIKRNRSKSTYHLYLCLSNVVTAEGGKFVLAAKRHRKTTCTE 174
TFPVS+KQPGPR+G IQC+IKR++S TY+LYLCLS+ V E GKF+L+AKR+ + TCTE
Sbjct: 115 TFPVSLKQPGPRNGAIQCFIKRDKSTQTYNLYLCLSSAVLVESGKFLLSAKRYSRATCTE 174
Query: 175 YTISMVSGNISRSSRTNIGKLRSNFLGTKFIIYDTQPPYNGAVVPHVGRTSKRFNSTKVS 234
YTI M + N SRSS IGKLRSN LGTKF+IYDTQPP N A V G+TS+RF S KVS
Sbjct: 175 YTIFMSADNTSRSSNMYIGKLRSNLLGTKFVIYDTQPPCNTANVSQSGKTSRRFYSRKVS 234
Query: 235 PKVPSVTYNIAQVSYELNVLGTRGPRRMRCMMHSIPASSVEPGGIVPGQPEQIVPRALED 294
PK PS TY+IAQVSYELNVLGTRGPRRM C+MHSIPASS+E GG VP QP+ ++ R+L++
Sbjct: 235 PKNPSSTYSIAQVSYELNVLGTRGPRRMNCVMHSIPASSLEAGGTVPCQPDSVLARSLDE 294
Query: 295 XXXXXXXXXXXXXXXXXXXXXIMDPSMDFSSARFSDIS--GSIMGGD---DNGEIKERPL 349
IMD S+ FSS+R+SDIS G ++GG D+ E KERPL
Sbjct: 295 ----------SFGSISFSKSSIMDRSIRFSSSRYSDISVGGPMVGGQALGDSDESKERPL 344
Query: 350 VLRNKPPRWHEQLQCWCLNFRGRVTIASVKNFQLVXXX--XXXXXXXXXXXXXXXXDPEK 407
+LRNK PRWHEQLQCWCLNF+GRVT+ASVKNFQLV D +K
Sbjct: 345 ILRNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAATQPAAGAPTPSQPAPPPPPDHDK 404
Query: 408 VILQFGKVARDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 448
VILQFGKVA+DMFTMDYRYPLSAFQAFAICLSSFDTKLACE
Sbjct: 405 VILQFGKVAKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 445
>Os07g0667000 Similar to Tubby-like protein 3
Length = 406
Score = 410 bits (1054), Expect = e-114, Method: Compositional matrix adjust.
Identities = 214/448 (47%), Positives = 283/448 (63%), Gaps = 42/448 (9%)
Query: 1 MSFRSIVRDVRDGFGSLSRRSFEVTLASLYGLTGHHKGKTQSSLDELDDSPAIIPESRWA 60
MSFRS++++V+ G++SRR F S G + DE + ++ ES W
Sbjct: 1 MSFRSVIQEVKGEIGAISRRGFR----SRPGRVRRVAAAAEEPPDESSAAALVMRESCWT 56
Query: 61 SLPPELLREVIRRLEADESTWPSRRNVVCFAAVCRTWREMCKETVLSPEFCGKLTFPVSI 120
LPPELLREV+ R+E E WP RR+VV A VCR+WR + +E V +PE G LTFP+S+
Sbjct: 57 QLPPELLREVLARVEESEGWWPRRRDVVACAGVCRSWRGIVREIVRTPEASGNLTFPISL 116
Query: 121 KQPGPRDGMIQCYIKRNRSKSTYHLYLCLSNVVTAEGGKFVLAAKRHRKTTCTEYTISMV 180
KQPGPRD ++C+I RNR+ TY+LY+ L++ +T + GKF+LAA++ R+TTCTEY IS+
Sbjct: 117 KQPGPRDAPMKCFIVRNRTTQTYYLYIGLTDALT-DDGKFLLAARKCRRTTCTEYLISLD 175
Query: 181 SGNISRSSRTNIGKLRSNFLGTKFIIYDTQPPYNGAVVPHVGRTSKRFNSTKVSPKVPSV 240
+IS+ + + +GKLRSNFLGTKF IYD PPY G V+ G++++ S +SP++P+
Sbjct: 176 MNDISKRTDSYVGKLRSNFLGTKFTIYDAHPPYAGDVISK-GQSARVIGSNHLSPRIPAG 234
Query: 241 TYNIAQVSYELNVLGTRGPRRMRCMMHSIPASSVEPGGIVPGQPEQIVPRALEDXXXXXX 300
Y ++ +SYELNVLG+RGPRRM C M SIP S++E GG P Q E P + +
Sbjct: 235 NYPVSHISYELNVLGSRGPRRMHCAMDSIPVSAIEQGGTAPTQTE--FPLSYHESFTSI- 291
Query: 301 XXXXXXXXXXXXXXXIMDPSMDFSSARFSDISGSIMGGDDNGEIKERPLVLRNKPPRWHE 360
P S R ++ + S++ NG LVL+NK PRWHE
Sbjct: 292 ------------------PFFKSKSVRANNSTASLL--TQNGS----KLVLKNKSPRWHE 327
Query: 361 QLQCWCLNFRGRVTIASVKNFQLVXXXXXXXXXXXXXXXXXXXDPEKVILQFGKVARDMF 420
LQCWCLNF GRVT+ASVKNFQLV + + VILQFGKV +DMF
Sbjct: 328 HLQCWCLNFHGRVTVASVKNFQLV---------ASDESNPTNQEHDDVILQFGKVGKDMF 378
Query: 421 TMDYRYPLSAFQAFAICLSSFDTKLACE 448
TMDYRYP+SAFQAFAICLSSFDTK+ACE
Sbjct: 379 TMDYRYPISAFQAFAICLSSFDTKIACE 406
>Os11g0163600 Tubby family protein
Length = 317
Score = 373 bits (958), Expect = e-103, Method: Compositional matrix adjust.
Identities = 189/327 (57%), Positives = 226/327 (69%), Gaps = 18/327 (5%)
Query: 130 IQCYIKRNRSKSTYHLYLCLSNVVTAEGGKFVLAAKRHRKTTCTEYTISMVSGNISRSSR 189
+QC+I+R++S TY+LYL L + V + GKF+L+AKR+ TCTEY ISM + N+SRS+
Sbjct: 1 MQCFIRRDKSTQTYYLYLSLGSAVLVDNGKFLLSAKRNWHATCTEYVISMNANNLSRSTN 60
Query: 190 TNIGKLRSNFLGTKFIIYDTQPPYNGAVVPHVGRTSKRFNSTKVSPKVPSVTYNIAQVSY 249
TNIGKLRSNFLGTKF+IYDT PYN G+TS+RF S K + K P TY+IA +SY
Sbjct: 61 TNIGKLRSNFLGTKFVIYDTHTPYNATSDSQSGKTSRRF-SNKGTAKHPCSTYSIANISY 119
Query: 250 ELNVLGTRGPRRMRCMMHSIPASSVEPGGIVPGQPEQIVPRALEDXXXXXXXXXXXXXXX 309
ELNV GTRGPRRM C+MHSIPASS+E GG VP QP+ I+ +L +
Sbjct: 120 ELNVFGTRGPRRMCCLMHSIPASSLEAGGTVPSQPDSILAHSLNE---------SSFRSV 170
Query: 310 XXXXXXIMDPSMDFSSARFSDIS---GSIMGG---DDNGEIKERPLVLRNKPPRWHEQLQ 363
+MD SM FSSA+FSDIS G +GG D+ E KE PL+L+NK PRWHEQLQ
Sbjct: 171 SFSKSSVMDHSMHFSSAQFSDISIGDGPRIGGRVLSDDEECKETPLILQNKAPRWHEQLQ 230
Query: 364 CWCLNFRGRVTIASVKNFQLVXXX--XXXXXXXXXXXXXXXXDPEKVILQFGKVARDMFT 421
CWCLNFRGRVT+ASVKNFQL+ + +KVILQFGKVA+DMFT
Sbjct: 231 CWCLNFRGRVTVASVKNFQLIAATQPAAGAPTPSQPVPPPPPEHDKVILQFGKVAKDMFT 290
Query: 422 MDYRYPLSAFQAFAICLSSFDTKLACE 448
MDY YPLSAFQAFAI LSSFDTKLACE
Sbjct: 291 MDYHYPLSAFQAFAISLSSFDTKLACE 317
>Os03g0351400 Similar to Tubby-like protein 3
Length = 296
Score = 322 bits (826), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 168/330 (50%), Positives = 214/330 (64%), Gaps = 44/330 (13%)
Query: 122 QPGPRDGMIQCYIKRNRSKSTYHLYLCLSNVVTAEGGKFVLAAKRHRKTTCTEYTISMVS 181
QPGPRDG ++C+I+RNR+ TY+LY+ L+ + A+ GKF+LAA++ RK TCT+Y IS+
Sbjct: 8 QPGPRDGTLKCFIRRNRTTQTYYLYIGLTEAL-ADDGKFLLAARKCRKPTCTDYLISLDM 66
Query: 182 GNISRSSRTNIGKLRSNFLGTKFIIYDTQPPYNGAVVPHVGRTSKRFNSTKVSPKVPSVT 241
++S+ S T IGKLRSNFLGTKF +YD PPY+GAVV R+++ +VSP+VP+
Sbjct: 67 SDMSKGSNTYIGKLRSNFLGTKFTVYDAHPPYDGAVVSK-SRSARVVGLNQVSPRVPAGN 125
Query: 242 YNIAQVSYELNVLGTRGPRRMRCMMHSIPASSVEPGGIVPGQPEQIVPRALEDXXXXXXX 301
Y ++ +SYELNVLG RGPRRM C+M SIP S+V+ GG P Q E P + D
Sbjct: 126 YPVSHISYELNVLGARGPRRMNCIMDSIPTSAVQEGGKAPTQTE--FPLSGLDSF----- 178
Query: 302 XXXXXXXXXXXXXXIMDPSMDF---SSARFSDISGSIMGGDDNGEIKERPLVLRNKPPRW 358
PS+ F SAR + + KE LVL+NK PRW
Sbjct: 179 -----------------PSISFFRSKSARIDSATSQL------STQKEEKLVLKNKSPRW 215
Query: 359 HEQLQCWCLNFRGRVTIASVKNFQLVXXXXXXXXXXXXXXXXXXXDPEKVILQFGKVARD 418
HEQLQCWCLNFRGRVT+ASVKNFQLV + +KVILQFGK+ +D
Sbjct: 216 HEQLQCWCLNFRGRVTVASVKNFQLV---------ASDENGPTNQEQDKVILQFGKIGKD 266
Query: 419 MFTMDYRYPLSAFQAFAICLSSFDTKLACE 448
+FTMDYRYP+SAFQ+FAICLSSFDTK+ACE
Sbjct: 267 LFTMDYRYPISAFQSFAICLSSFDTKIACE 296
>Os02g0705300 Tubby family protein
Length = 326
Score = 261 bits (667), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 142/290 (48%), Positives = 196/290 (67%), Gaps = 11/290 (3%)
Query: 1 MSFRSIVRDVR---DGFGSLSRRSFEVTLASLYGLTGHH------KGKTQSSLDELDDSP 51
MS +SIVR++R DG GS+SRR+ + G + H + + +L
Sbjct: 1 MSLKSIVRELREMRDGIGSMSRRAADGRAGGGRGGSRHSWPVLWSEQQQPPQQQQLQRQE 60
Query: 52 AIIPESRWASLPPELLREVIRRLEADESTWPSRRNVVCFAAVCRTWREMCKETVLSPEFC 111
+ RWA+LPPELL +VI+R+EA E+TWP+RR VV AAVCR+WRE+ KE V + E C
Sbjct: 61 HQQQQGRWANLPPELLLDVIQRVEASEATWPARRQVVACAAVCRSWREVTKEVVKTLEEC 120
Query: 112 GKLTFPVSIKQPGPRDGMIQCYIKRNRSKSTYHLYLCLSNVVTAEGGKFVLAAKRHRKTT 171
G++TFP+S+KQPGPR+ +QC+++R+R+ STY LYL LS + E K +LAA++ R+ T
Sbjct: 121 GRITFPISLKQPGPREHPVQCFVRRDRATSTYLLYLGLSPSLHGENDKLLLAARKIRRAT 180
Query: 172 CTEYTISMVSGNISRSSRTNIGKLRSNFLGTKFIIYDTQPPYNGAVVPHVGRTSKRFNST 231
T + IS+VS + S SS T +GKL+ NFLGTKF I+D+QPP + V+P+ R SKR +
Sbjct: 181 RTSFVISLVSNDFSLSSSTYVGKLKPNFLGTKFTIFDSQPPCDAVVLPN-NRPSKR-HFK 238
Query: 232 KVSPKVPSVTYNIAQVSYELNVLGTRGPRRMRCMMHSIPASSVEPGGIVP 281
+VSP++P YN+A VSYEL VL RGPRRM+C MHSIPA ++ GG P
Sbjct: 239 QVSPRLPLGNYNVATVSYELTVLRNRGPRRMQCTMHSIPALCIQEGGKAP 288
>Os05g0514300 Similar to Tubby-like protein 3
Length = 372
Score = 219 bits (558), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 105/210 (50%), Positives = 144/210 (68%), Gaps = 2/210 (0%)
Query: 58 RWASLPPELLREVIRRLEADESTWPSRRNVVCFAAVCRTWREMCKETVLSPEFCGKLTFP 117
RW+ L PELL E++RR++A WP RR+VV A VCR WR+ V P CG++TFP
Sbjct: 51 RWSRLLPELLTEIMRRVDAGAERWPPRRDVVACACVCRRWRDAAVSVVRPPLECGRITFP 110
Query: 118 VSIKQPGPRDGMIQCYIKRNRSKSTYHLYLCLSNVVTAEGGKFVLAAKRHRKTTCTEYTI 177
S+KQPGPRD + C+I+RN+ ST++LYL L+ +T + GKF+LAA+R R TEY I
Sbjct: 111 SSLKQPGPRDAPMHCFIRRNKKNSTFYLYLSLTQALT-DKGKFLLAARRFRNGAHTEYII 169
Query: 178 SMVSGNISRSSRTNIGKLRSNFLGTKFIIYDTQPPYNGAVVPHVGRTSKRFNSTKVSPKV 237
S ++ S + +GKLRS+FLGTKFIIYD+QPPY+GA P ++S+RF S +++P V
Sbjct: 170 SYDCDDLFPGSNSYVGKLRSDFLGTKFIIYDSQPPYDGA-KPSRSQSSRRFASKQINPNV 228
Query: 238 PSVTYNIAQVSYELNVLGTRGPRRMRCMMH 267
Y + QVSY+ N L +RGPRRM+C +
Sbjct: 229 SGGNYEVGQVSYKFNFLKSRGPRRMQCNIQ 258
Score = 138 bits (347), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 68/101 (67%), Positives = 71/101 (70%), Gaps = 7/101 (6%)
Query: 348 PLVLRNKPPRWHEQLQCWCLNFRGRVTIASVKNFQLVXXXXXXXXXXXXXXXXXXXDPEK 407
PL LRNK PRWHE LQCWCLNF GRVT+ASVKNFQLV D E
Sbjct: 279 PLALRNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLV-------APAGTSDPWGIADEET 331
Query: 408 VILQFGKVARDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 448
VILQFGK+ D FTMDYR PLSAFQAFAICL+SF TKLACE
Sbjct: 332 VILQFGKIEDDAFTMDYRQPLSAFQAFAICLTSFGTKLACE 372
>Os05g0560400 Tubby family protein
Length = 349
Score = 194 bits (492), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 99/213 (46%), Positives = 141/213 (66%), Gaps = 9/213 (4%)
Query: 62 LPPELLREVIRRLEADEST-WPSRRNVVCFAAVCRTWREMCKETVLSPEFCGKLTFPVSI 120
L PEL+ EV+RR+EA WP+R+++V A VCR WRE V G++TFP S+
Sbjct: 27 LLPELVEEVVRRVEASGGERWPARKDLVSCACVCRRWREAAAAVVRPLPESGRITFPSSL 86
Query: 121 KQPGPRDGMIQCYIKRNRSKSTYHLYLCLSNVVTAEGGKFVLAAKRHRKTTCTEYTISMV 180
KQPGP+D IQC++KRN+ KS ++LYL L N T + GKF++AA+R R+ TEY IS+
Sbjct: 87 KQPGPKDFPIQCFVKRNKKKSMFYLYLGLLN-GTMDKGKFLMAARRFRRGPHTEYVISLD 145
Query: 181 SGNISRSSRTNIGKLRSNFLGTKFIIYDTQPPYNGAVVPHVGRTSKRFNST------KVS 234
+ ++S+ S +GKLRS+F GT F IYD QPPY+ A R+S+RF ST ++
Sbjct: 146 ADDLSQGSNAYVGKLRSDFWGTNFKIYDNQPPYDDAKTSST-RSSQRFGSTHRFGSRRIC 204
Query: 235 PKVPSVTYNIAQVSYELNVLGTRGPRRMRCMMH 267
P++ + +N+ Q+SY+ N+L +RGPRRM C M
Sbjct: 205 PQISAGNFNVGQISYKYNLLKSRGPRRMFCTME 237
Score = 127 bits (319), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 63/94 (67%), Positives = 67/94 (71%), Gaps = 7/94 (7%)
Query: 350 VLRNKPPRWHEQLQCWCLNFRGRVTIASVKNFQLVXXXXXXXXXXXXXXXXXXXDPEKVI 409
VLRNK PRWHE LQCWCLNF GRVT+ASVKNFQLV D E VI
Sbjct: 261 VLRNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLV-------ATADPSHPDSVGDEETVI 313
Query: 410 LQFGKVARDMFTMDYRYPLSAFQAFAICLSSFDT 443
LQFGKV ++FTMDYR PLSAFQAFAICLSSF+T
Sbjct: 314 LQFGKVDSNIFTMDYRQPLSAFQAFAICLSSFET 347
>Os01g0759100 Tubby family protein
Length = 368
Score = 185 bits (469), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 96/223 (43%), Positives = 140/223 (62%), Gaps = 4/223 (1%)
Query: 56 ESRWASLPPELLREVIRRLEADESTWPSRRNVVCFAAVCRTWREMCKETVLSPEFCGKLT 115
E RW++L P+LL +++R +EA WP RR+VV A+VCR WR++ V P GK+T
Sbjct: 48 EERWSALVPDLLADILRCVEAGSERWPPRRDVVACASVCRRWRDVAVAVVQPPLESGKIT 107
Query: 116 FPVSIKQPGPRDGMIQCYIKRNRSKSTYHLYLCLSNVVTAEGGKFVLAAKRHRKTTCTEY 175
FP S+KQPGPRD +QC+IKRN+ ST+ LYL L+ +T + KF+LAA+R R+ EY
Sbjct: 108 FPSSLKQPGPRDAPMQCFIKRNKKNSTFFLYLGLTQELT-DDEKFLLAARRCRRGLHKEY 166
Query: 176 TISMVSGNISRSSRTNIGKLRSNFLGTKFIIYDTQPPYNGAVVPHVGRTSKRFNSTKVSP 235
I++ S + S++ +G L+SNF GTKF I D QPPY GA R+ + F + P
Sbjct: 167 AITINSDGLFHGSQSCVGNLKSNFTGTKFTIRDWQPPYEGAKA-FSSRSGRWFGNKHRCP 225
Query: 236 KVPSVTYNIAQVSYELNVLGTRGPRRMRCMMHS--IPASSVEP 276
V + + +VSY+ ++L RGPRRM C + + ++V+P
Sbjct: 226 LVSTGDVEVGEVSYKYSLLRPRGPRRMSCSVQCPVLKGTAVDP 268
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/98 (59%), Positives = 66/98 (67%), Gaps = 11/98 (11%)
Query: 349 LVLRNKPPRWHEQLQCWCLNFRGRVTIASVKNFQLVXXXXXXXXXXXXXXXXXXXDPEKV 408
LVL +K P WHE LQCWCLNF GRV +ASVKNFQL+ + V
Sbjct: 282 LVLNSKVPSWHEHLQCWCLNFHGRVMVASVKNFQLIAPVEPGEPSD-----------KTV 330
Query: 409 ILQFGKVARDMFTMDYRYPLSAFQAFAICLSSFDTKLA 446
+LQFGK+ D+FTMDYR PLSAFQAFAICLS+F TKLA
Sbjct: 331 VLQFGKIDDDVFTMDYRQPLSAFQAFAICLSNFGTKLA 368
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.135 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,600,882
Number of extensions: 573551
Number of successful extensions: 1581
Number of sequences better than 1.0e-10: 12
Number of HSP's gapped: 1544
Number of HSP's successfully gapped: 18
Length of query: 448
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 344
Effective length of database: 11,605,545
Effective search space: 3992307480
Effective search space used: 3992307480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 158 (65.5 bits)