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Os11g0163600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Tubby family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.6 (0.0141) R2 : 0.584
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.876 (0.0352) R2dC : 0.565 R2C : 0.566
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.117 (0.0296) R2dN8 : 0.0185 R2N8 : 0.0188
σ : 0.265
deviance : 32.18
__
_____
C
peak time of C : 3.17
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
25.67 0.238 10.6 -0.0652 0.556 0.544 0.38 0.364 0.145 5.32 25.47 93 -- --
26.16 0.238 10.6 -0.0751 0.572 0.506 0.528 -- 0.144 4.97 25.86 92 -- --
26 0.238 10.6 -0.0639 0.558 0.533 -- 0.427 0.142 5.28 24.48 92 -- --
26.81 0.241 10.6 -0.073 0.557 0.549 -- -- 0.145 5.38 24.18 92 -- --
30.72 0.258 10.6 -0.0614 -- 0.757 -- 0.454 0.134 -- 6.779 344 -- --
30.82 0.26 10.6 -0.0899 0.875 -- 0.576 -- 0.109 3.16 -- -- -- --
31.9 0.265 10.6 -0.102 0.878 -- -- -- 0.106 3.17 -- -- -- --
31.57 0.262 10.6 -0.0669 -- 0.763 -- -- 0.14 -- 5.62 358 -- --
26.95 0.242 10.6 -- 0.553 0.556 -- -- 0.154 5.43 24.13 92 -- --
75.75 0.407 10.6 -0.0644 -- -- -- -- 0.129 -- -- -- -- --
32.18 0.265 10.6 -- 0.876 -- -- -- 0.117 3.17 -- -- -- --
31.51 0.261 10.6 -- -- 0.788 -- -- 0.136 -- 1.018 414 -- --
75.86 0.407 10.6 -- -- -- -- -- 0.136 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 22.61 temperature 30.0 30 < th dose dependent rect. 4 17
5 22.91 radiation 10.0 270 < th dose dependent rect. 2 16
7 23.08 radiation 1.0 270 < th dose independent rect. 2 16
15 23.18 humidity 50.0 270 > th dose independent rect. 14 16
18 23.22 radiation 20.0 90 < th dose dependent rect. 4 15
20 23.26 radiation 40.0 90 < th dose dependent rect. 13 19
26 23.39 radiation 1.0 270 < th dose independent sin 2 NA
27 23.41 radiation 1.0 270 > th dose independent sin 2 NA
36 23.49 radiation 1.0 270 < th dose dependent sin 2 NA
46 23.51 temperature 10.0 90 > th dose dependent rect. 8 19
48 23.52 wind 9.0 270 < th dose dependent rect. 6 20
52 23.56 radiation 40.0 270 < th dose independent rect. 13 17
60 23.62 radiation 40.0 270 < th dose dependent rect. 13 17
64 23.65 radiation 40.0 90 < th dose dependent rect. 15 17
68 23.69 humidity 50.0 30 > th dose dependent rect. 4 17
86 23.75 temperature 10.0 10 > th dose dependent rect. 9 17
89 23.77 humidity 50.0 90 > th dose dependent rect. 4 15
95 23.80 radiation 1.0 270 > th dose independent rect. 6 9
98 23.81 precipitation 0.1 270 < th dose independent rect. 6 20
102 23.81 precipitation 0.1 270 < th dose dependent rect. 6 20
105 23.82 wind 9.0 270 < th dose dependent rect. 7 18
108 23.83 humidity 50.0 270 > th dose independent rect. 2 16
112 23.84 wind 9.0 270 < th dose independent rect. 6 20
115 23.85 precipitation 0.1 90 < th dose independent rect. 8 19
116 23.85 temperature 15.0 270 > th dose independent rect. 6 20
118 23.85 precipitation 0.1 90 < th dose dependent rect. 8 19
124 23.87 radiation 10.0 90 < th dose dependent sin 0 NA
128 23.89 wind 7.0 270 < th dose independent rect. 2 4
130 23.89 temperature 10.0 270 > th dose independent rect. 2 4
132 23.89 temperature 30.0 270 < th dose independent rect. 2 4
133 23.89 humidity 50.0 270 > th dose independent rect. 2 4
136 23.89 atmosphere 995.0 270 > th dose independent rect. 2 4
137 23.89 atmosphere 1015.0 270 < th dose independent rect. 2 4
138 23.89 radiation 20.0 270 < th dose independent rect. 2 4
149 23.90 radiation 20.0 270 < th dose independent rect. 15 15
157 23.92 radiation 40.0 270 < th dose dependent rect. 2 4
158 23.92 radiation 1.0 270 < th dose dependent rect. 3 7
173 23.96 precipitation 0.1 270 < th dose independent rect. 2 4
175 23.96 radiation 1.0 270 < th dose dependent rect. 3 4
176 23.96 precipitation 0.1 270 < th dose dependent rect. 2 4
184 23.99 radiation 1.0 270 < th dose independent rect. 3 4
199 24.00 wind 9.0 90 < th dose dependent rect. 8 20
210 24.03 temperature 25.0 90 < th dose independent rect. 4 16
218 24.04 precipitation 0.1 270 < th dose independent rect. 6 9
219 24.04 humidity 70.0 30 > th dose independent rect. 4 17
222 24.04 precipitation 0.1 270 < th dose dependent rect. 6 9
247 24.07 radiation 30.0 270 < th dose dependent rect. 1 7
259 24.09 radiation 20.0 90 < th dose independent rect. 4 17
264 24.10 atmosphere 995.0 270 > th dose independent rect. 6 9
280 24.13 wind 9.0 270 < th dose independent rect. 6 9
281 24.13 temperature 15.0 270 > th dose independent rect. 7 18
318 24.17 wind 7.0 270 < th dose independent rect. 7 18
321 24.17 wind 9.0 270 < th dose dependent rect. 18 8
347 24.21 temperature 10.0 270 > th dose independent rect. 6 9
348 24.21 atmosphere 1015.0 270 < th dose independent rect. 6 9
349 24.21 temperature 10.0 270 > th dose independent rect. 15 15
358 24.23 radiation 1.0 270 > th dose independent rect. 17 22
360 24.23 humidity 50.0 270 > th dose dependent rect. 19 7
365 24.24 wind 7.0 270 < th dose independent rect. 1 6
377 24.25 wind 9.0 270 < th dose dependent rect. 2 4
384 24.26 temperature 10.0 270 > th dose independent rect. 1 6
386 24.26 temperature 30.0 270 < th dose independent rect. 1 6
387 24.26 humidity 50.0 270 > th dose independent rect. 1 6
390 24.26 atmosphere 995.0 270 > th dose independent rect. 1 6
391 24.26 atmosphere 1015.0 270 < th dose independent rect. 1 6
392 24.26 radiation 30.0 270 < th dose independent rect. 1 6
394 24.26 wind 9.0 270 < th dose independent rect. 15 15
462 24.33 precipitation 0.1 270 < th dose independent rect. 1 6
466 24.33 precipitation 0.1 270 < th dose dependent rect. 1 6
477 24.35 radiation 10.0 90 > th dose independent rect. 8 23
540 24.42 radiation 10.0 90 > th dose independent rect. 8 9
558 24.42 temperature 30.0 270 < th dose dependent rect. 3 2
568 24.43 wind 1.0 270 > th dose independent rect. 14 16
624 24.48 atmosphere 995.0 90 > th dose independent rect. 8 19
656 24.51 radiation 10.0 90 > th dose independent rect. 8 7
657 24.51 temperature 15.0 270 > th dose independent rect. 18 8
660 24.51 atmosphere 995.0 270 > th dose independent rect. 6 20
664 24.51 temperature 10.0 90 > th dose dependent rect. 8 7
682 24.52 humidity 50.0 270 > th dose dependent rect. 2 4
713 24.54 wind 9.0 270 < th dose independent rect. 18 8
714 24.54 radiation 10.0 270 < th dose independent rect. 18 8
716 24.54 temperature 10.0 270 > th dose dependent rect. 6 8
718 24.55 humidity 50.0 270 > th dose independent rect. 18 8
722 24.55 temperature 10.0 270 > th dose independent rect. 2 16
723 24.55 atmosphere 1015.0 270 < th dose independent rect. 2 16
725 24.55 radiation 30.0 270 < th dose dependent rect. 18 8
783 24.60 temperature 30.0 270 < th dose dependent rect. 2 4
805 24.62 atmosphere 995.0 270 > th dose independent rect. 18 8
817 24.63 wind 1.0 270 > th dose independent rect. 2 4
818 24.63 wind 1.0 270 > th dose independent rect. 1 6
820 24.63 temperature 30.0 270 < th dose independent rect. 19 7
880 24.66 radiation 40.0 90 < th dose independent rect. 4 16
904 24.69 wind 9.0 270 < th dose independent rect. 2 16
912 24.70 radiation 1.0 10 > th dose independent rect. 8 10
947 24.73 temperature 30.0 90 < th dose dependent rect. 3 6
959 24.74 wind 9.0 270 < th dose dependent rect. 6 8
966 24.75 precipitation 0.1 270 < th dose independent rect. 15 15
972 24.75 precipitation 0.1 270 < th dose dependent rect. 15 15
987 24.77 humidity 50.0 270 > th dose dependent rect. 4 1