Os08g0103300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Tubby-like protein 3.
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Os08g0103300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Tubby-like protein 3.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 18.61 | 0.203 | 10.8 | 0.821 | 0.596 | 0.599 | -0.131 | -0.129 | 0.385 | 23.8 | 26.87 | 37 | -- | -- |
| 18.61 | 0.201 | 10.8 | 0.827 | 0.586 | 0.617 | -0.241 | -- | 0.386 | 23.7 | 27.42 | 41 | -- | -- |
| 18.61 | 0.201 | 10.8 | 0.825 | 0.597 | 0.601 | -- | -0.244 | 0.384 | 23.7 | 26.67 | 42 | -- | -- |
| 18.87 | 0.202 | 10.8 | 0.831 | 0.607 | 0.598 | -- | -- | 0.385 | 23.7 | 27.48 | 42 | -- | -- |
| 22.75 | 0.222 | 10.7 | 0.839 | -- | 0.996 | -- | -0.272 | 0.423 | -- | 17.78 | 33 | -- | -- |
| 24.74 | 0.233 | 10.8 | 0.802 | 1.14 | -- | -0.189 | -- | 0.347 | 0.00224 | -- | -- | -- | -- |
| 24.9 | 0.234 | 10.8 | 0.809 | 1.14 | -- | -- | -- | 0.348 | 0.00276 | -- | -- | -- | -- |
| 23.17 | 0.224 | 10.8 | 0.836 | -- | 0.993 | -- | -- | 0.42 | -- | 18.04 | 33 | -- | -- |
| 37.2 | 0.284 | 10.8 | -- | 0.792 | 0.573 | -- | -- | 0.269 | 23.9 | 50 | 48 | -- | -- |
| 107.32 | 0.484 | 10.8 | 0.845 | -- | -- | -- | -- | 0.363 | -- | -- | -- | -- | -- |
| 42.16 | 0.304 | 10.8 | -- | 1.15 | -- | -- | -- | 0.257 | 0.0426 | -- | -- | -- | -- |
| 41.25 | 0.299 | 10.8 | -- | -- | 0.961 | -- | -- | 0.333 | -- | 13.23 | 34 | -- | -- |
| 126.15 | 0.524 | 10.8 | -- | -- | -- | -- | -- | 0.27 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 18.64 | temperature | 30 | 270 | < th | dose dependent | rect. | 12 | 7 |
| 3 | 18.75 | temperature | 30 | 10 | < th | dose dependent | rect. | 12 | 8 |
| 6 | 18.79 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 19 |
| 8 | 18.81 | radiation | 30 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 10 | 18.83 | radiation | 30 | 30 | < th | dose dependent | no | NA | NA |
| 12 | 18.84 | radiation | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 13 | 18.84 | radiation | 30 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 14 | 18.85 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 17 |
| 16 | 18.87 | radiation | 20 | 30 | < th | dose dependent | sin | 23 | NA |
| 19 | 18.94 | temperature | 30 | 270 | < th | dose independent | rect. | 2 | 16 |
| 25 | 19.00 | humidity | 50 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 31 | 19.02 | radiation | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 37 | 19.05 | temperature | 30 | 270 | < th | dose independent | rect. | 13 | 6 |
| 67 | 19.26 | humidity | 60 | 10 | > th | dose dependent | sin | 22 | NA |
| 79 | 19.28 | temperature | 10 | 270 | > th | dose dependent | rect. | 8 | 16 |
| 107 | 19.36 | radiation | 10 | 90 | > th | dose independent | sin | 0 | NA |
| 110 | 19.37 | humidity | 50 | 270 | > th | dose dependent | rect. | 11 | 8 |
| 130 | 19.44 | humidity | 60 | 10 | > th | dose dependent | rect. | 13 | 21 |
| 137 | 19.48 | radiation | 10 | 90 | > th | dose independent | rect. | 8 | 23 |
| 144 | 19.50 | radiation | 30 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 145 | 19.51 | temperature | 30 | 270 | < th | dose independent | rect. | 13 | 17 |
| 163 | 19.55 | humidity | 60 | 10 | > th | dose dependent | rect. | 13 | 7 |
| 176 | 19.59 | humidity | 70 | 10 | > th | dose independent | rect. | 12 | 20 |
| 210 | 19.64 | humidity | 50 | 90 | > th | dose dependent | rect. | 13 | 20 |
| 227 | 19.67 | humidity | 60 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 256 | 19.73 | radiation | 10 | 90 | > th | dose independent | rect. | 16 | 23 |
| 280 | 19.77 | humidity | 50 | 10 | > th | dose dependent | no | NA | NA |
| 292 | 19.78 | humidity | 90 | 10 | < th | dose dependent | rect. | 8 | 17 |
| 297 | 19.79 | radiation | 10 | 90 | > th | dose independent | no | NA | NA |
| 299 | 19.79 | radiation | 10 | 90 | > th | dose independent | rect. | 6 | 12 |
| 384 | 19.79 | radiation | 1 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 386 | 19.81 | humidity | 70 | 90 | > th | dose independent | rect. | 13 | 19 |
| 427 | 19.84 | radiation | 1 | 90 | > th | dose dependent | no | NA | NA |
| 428 | 19.84 | radiation | 1 | 90 | > th | dose dependent | rect. | 5 | 14 |
| 487 | 19.85 | temperature | 30 | 270 | < th | dose independent | rect. | 11 | 21 |
| 504 | 19.85 | humidity | 60 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 568 | 19.91 | temperature | 25 | 10 | < th | dose independent | rect. | 13 | 7 |
| 585 | 19.92 | radiation | 30 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 594 | 19.93 | radiation | 10 | 90 | < th | dose dependent | rect. | 5 | 13 |
| 653 | 19.98 | radiation | 1 | 90 | > th | dose dependent | rect. | 11 | 23 |
| 657 | 19.99 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 19 |
| 664 | 20.00 | humidity | 90 | 10 | < th | dose dependent | sin | 22 | NA |
| 673 | 20.00 | humidity | 90 | 10 | < th | dose dependent | rect. | 4 | 21 |
| 675 | 20.00 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 677 | 20.00 | humidity | 90 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 693 | 20.03 | humidity | 90 | 10 | < th | dose dependent | rect. | 8 | 14 |
| 711 | 20.05 | humidity | 70 | 10 | > th | dose independent | rect. | 3 | 17 |
| 721 | 20.05 | temperature | 20 | 10 | > th | dose dependent | rect. | 5 | 23 |
| 728 | 20.06 | humidity | 90 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 730 | 20.07 | temperature | 20 | 10 | > th | dose dependent | no | NA | NA |
| 731 | 20.07 | humidity | 90 | 10 | < th | dose dependent | no | NA | NA |
| 738 | 20.08 | radiation | 10 | 10 | > th | dose independent | rect. | 8 | 10 |
| 752 | 20.08 | temperature | 20 | 10 | > th | dose dependent | sin | 20 | NA |
| 764 | 20.08 | humidity | 60 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 791 | 20.09 | radiation | 20 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 871 | 20.10 | radiation | 1 | 90 | > th | dose dependent | sin | 23 | NA |
| 877 | 20.10 | humidity | 60 | 90 | > th | dose dependent | rect. | 1 | 22 |
| 891 | 20.11 | radiation | 20 | 270 | < th | dose dependent | rect. | 21 | 22 |
| 892 | 20.11 | temperature | 20 | 30 | > th | dose dependent | rect. | 19 | 23 |
| 900 | 20.13 | humidity | 60 | 270 | > th | dose independent | rect. | 13 | 6 |
| 924 | 20.13 | temperature | 25 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 928 | 20.13 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 930 | 20.13 | humidity | 90 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 938 | 20.14 | humidity | 70 | 10 | > th | dose independent | rect. | 1 | 23 |
| 955 | 20.14 | humidity | 50 | 90 | > th | dose dependent | rect. | 15 | 18 |