BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0103300 Os08g0103300|AK120706
(451 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0103300 Similar to Tubby-like protein 3 754 0.0
Os04g0687900 Similar to T24D18.17 protein (Tubby-like prote... 607 e-174
Os05g0437900 Tubby family protein 578 e-165
Os01g0866800 Similar to F24P17.15 protein (Tubby-like prote... 550 e-157
Os12g0163400 Tubby family protein 524 e-149
Os07g0667000 Similar to Tubby-like protein 3 422 e-118
Os11g0163600 Tubby family protein 325 4e-89
Os03g0351400 Similar to Tubby-like protein 3 317 1e-86
Os01g0759100 Tubby family protein 285 5e-77
Os02g0705300 Tubby family protein 265 4e-71
Os05g0514300 Similar to Tubby-like protein 3 235 4e-62
Os05g0560400 Tubby family protein 212 5e-55
>Os08g0103300 Similar to Tubby-like protein 3
Length = 451
Score = 754 bits (1948), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/451 (85%), Positives = 385/451 (85%)
Query: 1 MSFRSIVRDVRDSFGSLSRRSFEVRISGLPGLSGHHRGKSLGSLSELRDRPVVVDQSRWV 60
MSFRSIVRDVRDSFGSLSRRSFEVRISGLPGLSGHHRGKSLGSLSELRDRPVVVDQSRWV
Sbjct: 1 MSFRSIVRDVRDSFGSLSRRSFEVRISGLPGLSGHHRGKSLGSLSELRDRPVVVDQSRWV 60
Query: 61 GLPPELLRDVMKRLEEGESNWPSRKDVVACAAVCRTWREICKDIVQSPEICGKLTFPVSL 120
GLPPELLRDVMKRLEEGESNWPSRKDVVACAAVCRTWREICKDIVQSPEICGKLTFPVSL
Sbjct: 61 GLPPELLRDVMKRLEEGESNWPSRKDVVACAAVCRTWREICKDIVQSPEICGKLTFPVSL 120
Query: 121 KQPGPRDGLIQCFIKRDKSKLTYYLYLCLSPAVLSENGKFLLAAKRNRRATSTEYIISVD 180
KQPGPRDGLIQCFIKRDKSKLTYYLYLCLSPAVLSENGKFLLAAKRNRRATSTEYIISVD
Sbjct: 121 KQPGPRDGLIQCFIKRDKSKLTYYLYLCLSPAVLSENGKFLLAAKRNRRATSTEYIISVD 180
Query: 181 SKNISRSSNGYVGKMRSNFLGTKFVVYDTQPPYNAGSLMSCQHGSRRISSRRVSPKLPTG 240
SKNISRSSNGYVGKMRSNFLGTKFVVYDTQPPYNAGSLMSCQHGSRRISSRRVSPKLPTG
Sbjct: 181 SKNISRSSNGYVGKMRSNFLGTKFVVYDTQPPYNAGSLMSCQHGSRRISSRRVSPKLPTG 240
Query: 241 SYPIAHVKYELNVLGTRGPRRMQCTMHSIPASAVDPEGVVPGQPEQLLPGPXXXXXXXXX 300
SYPIAHVKYELNVLGTRGPRRMQCTMHSIPASAVDPEGVVPGQPEQLLPGP
Sbjct: 241 SYPIAHVKYELNVLGTRGPRRMQCTMHSIPASAVDPEGVVPGQPEQLLPGPFEESFRSTN 300
Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXANQQGEDDIPEAKERPLVLRNKVPRWHEQLQCWCL 360
ANQQGEDDIPEAKERPLVLRNKVPRWHEQLQCWCL
Sbjct: 301 TSSRFSFMDRSLDFSSSRFSEISGSANQQGEDDIPEAKERPLVLRNKVPRWHEQLQCWCL 360
Query: 361 NFRGRVTVASVKNFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDHGKVILQFGKVGK 420
NFRGRVTVASVKNF DHGKVILQFGKVGK
Sbjct: 361 NFRGRVTVASVKNFQLIAAASSESSQLEQQQQQQQQNHASSSSSASDHGKVILQFGKVGK 420
Query: 421 DMFTMDYRYPLSAFQAFAICLTSFDTKLACE 451
DMFTMDYRYPLSAFQAFAICLTSFDTKLACE
Sbjct: 421 DMFTMDYRYPLSAFQAFAICLTSFDTKLACE 451
>Os04g0687900 Similar to T24D18.17 protein (Tubby-like protein TULP8)
Length = 462
Score = 607 bits (1564), Expect = e-174, Method: Compositional matrix adjust.
Identities = 307/467 (65%), Positives = 340/467 (72%), Gaps = 21/467 (4%)
Query: 1 MSFRSIVRDVRDSFGSLSRRSFEVRISGLPGLSGHHRGKSLGSLSELRDRPVVVDQSRWV 60
MSFRSIVRD RDSFG+LS+RSFEV+ISG SG HRGKS+G SEL D PVV QS+W
Sbjct: 1 MSFRSIVRDFRDSFGTLSKRSFEVKISGF---SGRHRGKSIGPSSELDDTPVVAQQSKWA 57
Query: 61 GLPPELLRDVMKRLEEGESNWPSRKDVVACAAVCRTWREICKDIVQSPEICGKLTFPVSL 120
GLPPELLRDVMKRLEE +SNWPSRKDVVACA+VC TWR++CKDIV++PE CGKLTFPVSL
Sbjct: 58 GLPPELLRDVMKRLEEDDSNWPSRKDVVACASVCTTWRDMCKDIVRNPEFCGKLTFPVSL 117
Query: 121 KQPGPRDGLIQCFIKRDKSKLTYYLYLCLSPAVLSENGKFLLAAKRNRRATSTEYIISVD 180
KQPGPRDG+IQCFIKRDKSKLTY+LYLCLS AVL E GKFLL+AKR+RR T T+YIIS+D
Sbjct: 118 KQPGPRDGVIQCFIKRDKSKLTYHLYLCLSSAVLDETGKFLLSAKRSRRTTHTDYIISMD 177
Query: 181 SKNISRSSNGYVGKMRSNFLGTKFVVYDTQPPYNAGSLMSCQHGSRRISSRRVSPKLPTG 240
SKNISRSS+GY+GK+RSNFLGTKF++YDTQPPYNA +L S + SRR SSR+VSPK+PTG
Sbjct: 178 SKNISRSSSGYIGKLRSNFLGTKFIIYDTQPPYNARTLCSQERTSRRFSSRKVSPKVPTG 237
Query: 241 SYPIAHVKYELNVLGTRGPRRMQCTMHSIPASAVDPEGVVPGQPEQLLPGPXXXXXXXXX 300
YPI V YELNVLGTRGPRRMQC MHSIPASAV+P G+VPGQP++LLP
Sbjct: 238 CYPIVQVNYELNVLGTRGPRRMQCAMHSIPASAVEPGGIVPGQPKELLPRLFEESFRSMA 297
Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXANQQGE------DDIPEAKERPLVLRNKVPRWHEQ 354
QG+ DD+ KERPLVLRNK PRWHEQ
Sbjct: 298 TSFSKYSITDHSTDFSSSRFSEFGGGALQGQEQEQDGDDV--NKERPLVLRNKAPRWHEQ 355
Query: 355 LQCWCLNFRGRVTVASVKNFXXXXXXXXXXXXXXXX----------XXXXXXXXXXXXXX 404
LQCWCLNFRGRVTVASVKNF
Sbjct: 356 LQCWCLNFRGRVTVASVKNFQLIAAAPQPSSGAASEPSQAGQAAQQQTQPSQPSSSSSSS 415
Query: 405 XXDHGKVILQFGKVGKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE 451
+H VILQFGKV KDMFTMDYRYPLSAFQAFAICLTSFDTKLACE
Sbjct: 416 SSNHDTVILQFGKVAKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE 462
>Os05g0437900 Tubby family protein
Length = 445
Score = 578 bits (1491), Expect = e-165, Method: Compositional matrix adjust.
Identities = 282/455 (61%), Positives = 333/455 (73%), Gaps = 14/455 (3%)
Query: 1 MSFRSIVRDVRDSFGSLSRRSFEVRISGLPGLSGHHRGKSLGSLSELRDRPVVVDQSRWV 60
MSFRSIVRDVRDSFGSLSRRSFEV ++GL GL+GHHRGKS ++ EL D +++ +SRW
Sbjct: 1 MSFRSIVRDVRDSFGSLSRRSFEVTLAGLSGLTGHHRGKSQSTVHELCDADLIIQESRWA 60
Query: 61 GLPPELLRDVMKRLEEGESNWPSRKDVVACAAVCRTWREICKDIVQSPEICGKLTFPVSL 120
LPPELLRDV++RLE ES WPSRKDVV+CAAVC+ WRE+CK+IV SPE CGKLTFP+SL
Sbjct: 61 SLPPELLRDVIRRLEASESTWPSRKDVVSCAAVCKAWREMCKEIVLSPEFCGKLTFPLSL 120
Query: 121 KQPGPRDGLIQCFIKRDKSKLTYYLYLCLSPAVLSENGKFLLAAKRNRRATSTEYIISVD 180
KQPGPRDG+IQCFIKRDKSK TY+LYLCLS AVL+++GKFLL+AKR+R+ T TEY+IS+D
Sbjct: 121 KQPGPRDGMIQCFIKRDKSKSTYHLYLCLSTAVLADSGKFLLSAKRHRKTTCTEYVISMD 180
Query: 181 SKNISRSSNGYVGKMRSNFLGTKFVVYDTQPPYNAGSLMSCQHGSRRISSRRVSPKLPTG 240
+ NISRSS+ Y+GK+RSNFLGTKF++YDTQP YN + SRR +S++VSPK+P+G
Sbjct: 181 ADNISRSSSTYIGKLRSNFLGTKFIIYDTQPSYNGAVIPPVGRSSRRFNSKKVSPKMPSG 240
Query: 241 SYPIAHVKYELNVLGTRGPRRMQCTMHSIPASAVDPEGVVPGQPEQLLPGPXXXXXXXXX 300
SY IA V YELNVLGTRGPRRM C MHSIPAS+V+P G+VPGQPEQ++P
Sbjct: 241 SYNIAQVTYELNVLGTRGPRRMHCVMHSIPASSVEPGGIVPGQPEQIVPRAFEESFRSTT 300
Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXANQQG----EDDIPEAKERPLVLRNKVPRWHEQLQ 356
++ G D+ + KERPLVLRNK PRWHEQLQ
Sbjct: 301 SFSKSSIMDRSMDFSSSRDFSSARFSDIAGGTINGDEEGQNKERPLVLRNKAPRWHEQLQ 360
Query: 357 CWCLNFRGRVTVASVKNFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDHGKVILQFG 416
CWCLNFRGRVT+ASVKNF + K+ILQFG
Sbjct: 361 CWCLNFRGRVTIASVKNF----------QLIAAPAQPPAGAPTPSQPAPPEQDKIILQFG 410
Query: 417 KVGKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE 451
KV KDMFTMDYRYPLSAFQAFAICL+SFDTKLACE
Sbjct: 411 KVAKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 445
>Os01g0866800 Similar to F24P17.15 protein (Tubby-like protein TULP9)
Length = 448
Score = 550 bits (1417), Expect = e-157, Method: Compositional matrix adjust.
Identities = 275/458 (60%), Positives = 322/458 (70%), Gaps = 17/458 (3%)
Query: 1 MSFRSIVRDVRDSFGSLSRRSFEVRISGLPGLSGHHRGKSLGSLSELRDRPVVVDQSRWV 60
MSFRSIVRDVRD FGSLSRRSFEV ++ L GL+GHH+GK+ SL EL D P ++ +SRW
Sbjct: 1 MSFRSIVRDVRDGFGSLSRRSFEVTLASLYGLTGHHKGKTQSSLDELDDSPAIIPESRWA 60
Query: 61 GLPPELLRDVMKRLEEGESNWPSRKDVVACAAVCRTWREICKDIVQSPEICGKLTFPVSL 120
LPPELLR+V++RLE ES WPSR++VV AAVCRTWRE+CK+ V SPE CGKLTFPVS+
Sbjct: 61 SLPPELLREVIRRLEADESTWPSRRNVVCFAAVCRTWREMCKETVLSPEFCGKLTFPVSI 120
Query: 121 KQPGPRDGLIQCFIKRDKSKLTYYLYLCLSPAVLSENGKFLLAAKRNRRATSTEYIISVD 180
KQPGPRDG+IQC+IKR++SK TY+LYLCLS V +E GKF+LAAKR+R+ T TEY IS+
Sbjct: 121 KQPGPRDGMIQCYIKRNRSKSTYHLYLCLSNVVTAEGGKFVLAAKRHRKTTCTEYTISMV 180
Query: 181 SKNISRSSNGYVGKMRSNFLGTKFVVYDTQPPYNAGSLMSCQHGSRRISSRRVSPKLPTG 240
S NISRSS +GK+RSNFLGTKF++YDTQPPYN + S+R +S +VSPK+P+
Sbjct: 181 SGNISRSSRTNIGKLRSNFLGTKFIIYDTQPPYNGAVVPHVGRTSKRFNSTKVSPKVPSV 240
Query: 241 SYPIAHVKYELNVLGTRGPRRMQCTMHSIPASAVDPEGVVPGQPEQLLPGPXXXXXXXXX 300
+Y IA V YELNVLGTRGPRRM+C MHSIPAS+V+P G+VPGQPEQ++P
Sbjct: 241 TYNIAQVSYELNVLGTRGPRRMRCMMHSIPASSVEPGGIVPGQPEQIVPRALEDSFRSTT 300
Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXA-------NQQGEDDIPEAKERPLVLRNKVPRWHE 353
A + G DD E KERPLVLRNK PRWHE
Sbjct: 301 SFSQSFRSTTSFSKSIMDPSMDFSSARFSDISGSIMGGDDNGEIKERPLVLRNKPPRWHE 360
Query: 354 QLQCWCLNFRGRVTVASVKNFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDHGKVIL 413
QLQCWCLNFRGRVT+ASVKNF D KVIL
Sbjct: 361 QLQCWCLNFRGRVTIASVKNF----------QLVAAPSPPPAGAPTPSQPGPADPEKVIL 410
Query: 414 QFGKVGKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE 451
QFGKV +DMFTMDYRYPLSAFQAFAICL+SFDTKLACE
Sbjct: 411 QFGKVARDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 448
>Os12g0163400 Tubby family protein
Length = 445
Score = 524 bits (1349), Expect = e-149, Method: Compositional matrix adjust.
Identities = 271/459 (59%), Positives = 307/459 (66%), Gaps = 22/459 (4%)
Query: 1 MSFRSIVRDVRDSFGSLSRRSFEVRISGLPGLSGHHRGKSLGSLSELRDRPV------VV 54
MSFRSIVRDVRD FGSLSRR FEVR L GH RG+S ++ ELRD VV
Sbjct: 1 MSFRSIVRDVRDGFGSLSRRGFEVR------LVGHRRGRSHSAVHELRDGHAAAAAADVV 54
Query: 55 DQSRWVGLPPELLRDVMKRLEEGESNWPSRKDVVACAAVCRTWREICKDIVQSPEICGKL 114
S W LPPELLRDV++RLE E+ WPSRK+VVACAAVCRTWR++C++IV++PE CGK+
Sbjct: 55 QSSCWANLPPELLRDVIERLEASEAAWPSRKNVVACAAVCRTWRDMCREIVKNPEFCGKI 114
Query: 115 TFPVSLKQPGPRDGLIQCFIKRDKSKLTYYLYLCLSPAVLSENGKFLLAAKRNRRATSTE 174
TFPVSLKQPGPR+G IQCFIKRDKS TY LYLCLS AVL E+GKFLL+AKR RAT TE
Sbjct: 115 TFPVSLKQPGPRNGAIQCFIKRDKSTQTYNLYLCLSSAVLVESGKFLLSAKRYSRATCTE 174
Query: 175 YIISVDSKNISRSSNGYVGKMRSNFLGTKFVVYDTQPPYNAGSLMSCQHGSRRISSRRVS 234
Y I + + N SRSSN Y+GK+RSN LGTKFV+YDTQPP N ++ SRR SR+VS
Sbjct: 175 YTIFMSADNTSRSSNMYIGKLRSNLLGTKFVIYDTQPPCNTANVSQSGKTSRRFYSRKVS 234
Query: 235 PKLPTGSYPIAHVKYELNVLGTRGPRRMQCTMHSIPASAVDPEGVVPGQPEQLLPGPXXX 294
PK P+ +Y IA V YELNVLGTRGPRRM C MHSIPAS+++ G VP QP+ +L
Sbjct: 235 PKNPSSTYSIAQVSYELNVLGTRGPRRMNCVMHSIPASSLEAGGTVPCQPDSVLARSLDE 294
Query: 295 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--XANQQGEDDIPEAKERPLVLRNKVPRWH 352
Q D E+KERPL+LRNK PRWH
Sbjct: 295 SFGSISFSKSSIMDRSIRFSSSRYSDISVGGPMVGGQALGDSDESKERPLILRNKAPRWH 354
Query: 353 EQLQCWCLNFRGRVTVASVKNFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDHGKVI 412
EQLQCWCLNF+GRVTVASVKNF DH KVI
Sbjct: 355 EQLQCWCLNFKGRVTVASVKNF--------QLVAATQPAAGAPTPSQPAPPPPPDHDKVI 406
Query: 413 LQFGKVGKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE 451
LQFGKV KDMFTMDYRYPLSAFQAFAICL+SFDTKLACE
Sbjct: 407 LQFGKVAKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 445
>Os07g0667000 Similar to Tubby-like protein 3
Length = 406
Score = 422 bits (1084), Expect = e-118, Method: Compositional matrix adjust.
Identities = 219/451 (48%), Positives = 281/451 (62%), Gaps = 45/451 (9%)
Query: 1 MSFRSIVRDVRDSFGSLSRRSFEVRISGLPGLSGHHRGKSLGSLSELRDRPVVVDQSRWV 60
MSFRS++++V+ G++SRR F R PG + E +V+ +S W
Sbjct: 1 MSFRSVIQEVKGEIGAISRRGFRSR----PGRVRRVAAAAEEPPDESSAAALVMRESCWT 56
Query: 61 GLPPELLRDVMKRLEEGESNWPSRKDVVACAAVCRTWREICKDIVQSPEICGKLTFPVSL 120
LPPELLR+V+ R+EE E WP R+DVVACA VCR+WR I ++IV++PE G LTFP+SL
Sbjct: 57 QLPPELLREVLARVEESEGWWPRRRDVVACAGVCRSWRGIVREIVRTPEASGNLTFPISL 116
Query: 121 KQPGPRDGLIQCFIKRDKSKLTYYLYLCLSPAVLSENGKFLLAAKRNRRATSTEYIISVD 180
KQPGPRD ++CFI R+++ TYYLY+ L+ A L+++GKFLLAA++ RR T TEY+IS+D
Sbjct: 117 KQPGPRDAPMKCFIVRNRTTQTYYLYIGLTDA-LTDDGKFLLAARKCRRTTCTEYLISLD 175
Query: 181 SKNISRSSNGYVGKMRSNFLGTKFVVYDTQPPYNAGSLMSCQHGSRRISSRRVSPKLPTG 240
+IS+ ++ YVGK+RSNFLGTKF +YD PPY AG ++S +R I S +SP++P G
Sbjct: 176 MNDISKRTDSYVGKLRSNFLGTKFTIYDAHPPY-AGDVISKGQSARVIGSNHLSPRIPAG 234
Query: 241 SYPIAHVKYELNVLGTRGPRRMQCTMHSIPASAVDPEGVVPGQPEQLLPGPXXXXXXXXX 300
+YP++H+ YELNVLG+RGPRRM C M SIP SA++ G P Q E L
Sbjct: 235 NYPVSHISYELNVLGSRGPRRMHCAMDSIPVSAIEQGGTAPTQTEFPL------------ 282
Query: 301 XXXXXXXXXXXXXXXXXXXXXXXXXANQQGEDDIPEAKERPLVLRNKVPRWHEQLQCWCL 360
AN + + + LVL+NK PRWHE LQCWCL
Sbjct: 283 -------SYHESFTSIPFFKSKSVRANNSTASLLTQNGSK-LVLKNKSPRWHEHLQCWCL 334
Query: 361 NFRGRVTVASVKNFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDHGKVILQFGKVGK 420
NF GRVTVASVKNF +H VILQFGKVGK
Sbjct: 335 NFHGRVTVASVKNF-------------------QLVASDESNPTNQEHDDVILQFGKVGK 375
Query: 421 DMFTMDYRYPLSAFQAFAICLTSFDTKLACE 451
DMFTMDYRYP+SAFQAFAICL+SFDTK+ACE
Sbjct: 376 DMFTMDYRYPISAFQAFAICLSSFDTKIACE 406
>Os11g0163600 Tubby family protein
Length = 317
Score = 325 bits (833), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 171/327 (52%), Positives = 200/327 (61%), Gaps = 15/327 (4%)
Query: 130 IQCFIKRDKSKLTYYLYLCLSPAVLSENGKFLLAAKRNRRATSTEYIISVDSKNISRSSN 189
+QCFI+RDKS TYYLYL L AVL +NGKFLL+AKRN AT TEY+IS+++ N+SRS+N
Sbjct: 1 MQCFIRRDKSTQTYYLYLSLGSAVLVDNGKFLLSAKRNWHATCTEYVISMNANNLSRSTN 60
Query: 190 GYVGKMRSNFLGTKFVVYDTQPPYNAGSLMSCQHGSRRISSRRVSPKLPTGSYPIAHVKY 249
+GK+RSNFLGTKFV+YDT PYNA S SRR S++ + K P +Y IA++ Y
Sbjct: 61 TNIGKLRSNFLGTKFVIYDTHTPYNATSDSQSGKTSRRFSNKGTA-KHPCSTYSIANISY 119
Query: 250 ELNVLGTRGPRRMQCTMHSIPASAVDPEGVVPGQPEQLLPGPXXXXXXXXXXXXXXXXXX 309
ELNV GTRGPRRM C MHSIPAS+++ G VP QP+ +L
Sbjct: 120 ELNVFGTRGPRRMCCLMHSIPASSLEAGGTVPSQPDSILAHSLNESSFRSVSFSKSSVMD 179
Query: 310 XXXXXXXXXXXXXXX-----XANQQGEDDIPEAKERPLVLRNKVPRWHEQLQCWCLNFRG 364
+ DD E KE PL+L+NK PRWHEQLQCWCLNFRG
Sbjct: 180 HSMHFSSAQFSDISIGDGPRIGGRVLSDD-EECKETPLILQNKAPRWHEQLQCWCLNFRG 238
Query: 365 RVTVASVKNFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDHGKVILQFGKVGKDMFT 424
RVTVASVKNF +H KVILQFGKV KDMFT
Sbjct: 239 RVTVASVKNF--------QLIAATQPAAGAPTPSQPVPPPPPEHDKVILQFGKVAKDMFT 290
Query: 425 MDYRYPLSAFQAFAICLTSFDTKLACE 451
MDY YPLSAFQAFAI L+SFDTKLACE
Sbjct: 291 MDYHYPLSAFQAFAISLSSFDTKLACE 317
>Os03g0351400 Similar to Tubby-like protein 3
Length = 296
Score = 317 bits (812), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 163/330 (49%), Positives = 207/330 (62%), Gaps = 41/330 (12%)
Query: 122 QPGPRDGLIQCFIKRDKSKLTYYLYLCLSPAVLSENGKFLLAAKRNRRATSTEYIISVDS 181
QPGPRDG ++CFI+R+++ TYYLY+ L+ A L+++GKFLLAA++ R+ T T+Y+IS+D
Sbjct: 8 QPGPRDGTLKCFIRRNRTTQTYYLYIGLTEA-LADDGKFLLAARKCRKPTCTDYLISLDM 66
Query: 182 KNISRSSNGYVGKMRSNFLGTKFVVYDTQPPYNAGSLMSCQHGSRRISSRRVSPKLPTGS 241
++S+ SN Y+GK+RSNFLGTKF VYD PPY+ G+++S +R + +VSP++P G+
Sbjct: 67 SDMSKGSNTYIGKLRSNFLGTKFTVYDAHPPYD-GAVVSKSRSARVVGLNQVSPRVPAGN 125
Query: 242 YPIAHVKYELNVLGTRGPRRMQCTMHSIPASAVDPEGVVPGQPEQLLPGPXXXXXXXXXX 301
YP++H+ YELNVLG RGPRRM C M SIP SAV G P Q E L G
Sbjct: 126 YPVSHISYELNVLGARGPRRMNCIMDSIPTSAVQEGGKAPTQTEFPLSG----------- 174
Query: 302 XXXXXXXXXXXXXXXXXXXXXXXXANQQGEDDIPEAKERPLVLRNKVPRWHEQLQCWCLN 361
A Q + KE LVL+NK PRWHEQLQCWCLN
Sbjct: 175 -----LDSFPSISFFRSKSARIDSATSQ----LSTQKEEKLVLKNKSPRWHEQLQCWCLN 225
Query: 362 FRGRVTVASVKNFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDHGKVILQFGKVGKD 421
FRGRVTVASVKNF + KVILQFGK+GKD
Sbjct: 226 FRGRVTVASVKNF-------------------QLVASDENGPTNQEQDKVILQFGKIGKD 266
Query: 422 MFTMDYRYPLSAFQAFAICLTSFDTKLACE 451
+FTMDYRYP+SAFQ+FAICL+SFDTK+ACE
Sbjct: 267 LFTMDYRYPISAFQSFAICLSSFDTKIACE 296
>Os01g0759100 Tubby family protein
Length = 368
Score = 285 bits (729), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 160/396 (40%), Positives = 211/396 (53%), Gaps = 77/396 (19%)
Query: 56 QSRWVGLPPELLRDVMKRLEEGESNWPSRKDVVACAAVCRTWREICKDIVQSPEICGKLT 115
+ RW L P+LL D+++ +E G WP R+DVVACA+VCR WR++ +VQ P GK+T
Sbjct: 48 EERWSALVPDLLADILRCVEAGSERWPPRRDVVACASVCRRWRDVAVAVVQPPLESGKIT 107
Query: 116 FPVSLKQPGPRDGLIQCFIKRDKSKLTYYLYLCLSPAVLSENGKFLLAAKRNRRATSTEY 175
FP SLKQPGPRD +QCFIKR+K T++LYL L+ L+++ KFLLAA+R RR EY
Sbjct: 108 FPSSLKQPGPRDAPMQCFIKRNKKNSTFFLYLGLTQE-LTDDEKFLLAARRCRRGLHKEY 166
Query: 176 IISVDSKNISRSSNGYVGKMRSNFLGTKFVVYDTQPPYNAGSLMSCQHGSRRISSRRVSP 235
I+++S + S VG ++SNF GTKF + D QPPY S + G R ++ P
Sbjct: 167 AITINSDGLFHGSQSCVGNLKSNFTGTKFTIRDWQPPYEGAKAFSSRSG-RWFGNKHRCP 225
Query: 236 KLPTGSYPIAHVKYELNVLGTRGPRRMQCTMHS--IPASAVDPEGVVPGQPEQLLPGPXX 293
+ TG + V Y+ ++L RGPRRM C++ + +AVDP+
Sbjct: 226 LVSTGDVEVGEVSYKYSLLRPRGPRRMSCSVQCPVLKGTAVDPQD--------------- 270
Query: 294 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANQQGEDDIPEAKERPLVLRNKVPRWHE 353
++ + IP + LVL +KVP WHE
Sbjct: 271 ---------------------------------GKRLSNSIPSS----LVLNSKVPSWHE 293
Query: 354 QLQCWCLNFRGRVTVASVKNFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDHGKVIL 413
LQCWCLNF GRV VASVKNF V+L
Sbjct: 294 HLQCWCLNFHGRVMVASVKNFQLIAPVEPGEPSDKT---------------------VVL 332
Query: 414 QFGKVGKDMFTMDYRYPLSAFQAFAICLTSFDTKLA 449
QFGK+ D+FTMDYR PLSAFQAFAICL++F TKLA
Sbjct: 333 QFGKIDDDVFTMDYRQPLSAFQAFAICLSNFGTKLA 368
>Os02g0705300 Tubby family protein
Length = 326
Score = 265 bits (678), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 124/224 (55%), Positives = 168/224 (75%), Gaps = 2/224 (0%)
Query: 58 RWVGLPPELLRDVMKRLEEGESNWPSRKDVVACAAVCRTWREICKDIVQSPEICGKLTFP 117
RW LPPELL DV++R+E E+ WP+R+ VVACAAVCR+WRE+ K++V++ E CG++TFP
Sbjct: 67 RWANLPPELLLDVIQRVEASEATWPARRQVVACAAVCRSWREVTKEVVKTLEECGRITFP 126
Query: 118 VSLKQPGPRDGLIQCFIKRDKSKLTYYLYLCLSPAVLSENGKFLLAAKRNRRATSTEYII 177
+SLKQPGPR+ +QCF++RD++ TY LYL LSP++ EN K LLAA++ RRAT T ++I
Sbjct: 127 ISLKQPGPREHPVQCFVRRDRATSTYLLYLGLSPSLHGENDKLLLAARKIRRATRTSFVI 186
Query: 178 SVDSKNISRSSNGYVGKMRSNFLGTKFVVYDTQPPYNAGSLMSCQHGSRRISSRRVSPKL 237
S+ S + S SS+ YVGK++ NFLGTKF ++D+QPP +A L + + R ++VSP+L
Sbjct: 187 SLVSNDFSLSSSTYVGKLKPNFLGTKFTIFDSQPPCDAVVLPNNRPSKRHF--KQVSPRL 244
Query: 238 PTGSYPIAHVKYELNVLGTRGPRRMQCTMHSIPASAVDPEGVVP 281
P G+Y +A V YEL VL RGPRRMQCTMHSIPA + G P
Sbjct: 245 PLGNYNVATVSYELTVLRNRGPRRMQCTMHSIPALCIQEGGKAP 288
>Os05g0514300 Similar to Tubby-like protein 3
Length = 372
Score = 235 bits (600), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 110/210 (52%), Positives = 149/210 (70%), Gaps = 2/210 (0%)
Query: 58 RWVGLPPELLRDVMKRLEEGESNWPSRKDVVACAAVCRTWREICKDIVQSPEICGKLTFP 117
RW L PELL ++M+R++ G WP R+DVVACA VCR WR+ +V+ P CG++TFP
Sbjct: 51 RWSRLLPELLTEIMRRVDAGAERWPPRRDVVACACVCRRWRDAAVSVVRPPLECGRITFP 110
Query: 118 VSLKQPGPRDGLIQCFIKRDKSKLTYYLYLCLSPAVLSENGKFLLAAKRNRRATSTEYII 177
SLKQPGPRD + CFI+R+K T+YLYL L+ A L++ GKFLLAA+R R TEYII
Sbjct: 111 SSLKQPGPRDAPMHCFIRRNKKNSTFYLYLSLTQA-LTDKGKFLLAARRFRNGAHTEYII 169
Query: 178 SVDSKNISRSSNGYVGKMRSNFLGTKFVVYDTQPPYNAGSLMSCQHGSRRISSRRVSPKL 237
S D ++ SN YVGK+RS+FLGTKF++YD+QPPY+ G+ S SRR +S++++P +
Sbjct: 170 SYDCDDLFPGSNSYVGKLRSDFLGTKFIIYDSQPPYD-GAKPSRSQSSRRFASKQINPNV 228
Query: 238 PTGSYPIAHVKYELNVLGTRGPRRMQCTMH 267
G+Y + V Y+ N L +RGPRRMQC +
Sbjct: 229 SGGNYEVGQVSYKFNFLKSRGPRRMQCNIQ 258
Score = 128 bits (321), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 66/111 (59%), Positives = 67/111 (60%), Gaps = 17/111 (15%)
Query: 341 PLVLRNKVPRWHEQLQCWCLNFRGRVTVASVKNFXXXXXXXXXXXXXXXXXXXXXXXXXX 400
PL LRNK PRWHE LQCWCLNF GRVTVASVKNF
Sbjct: 279 PLALRNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVAPAGTSDPWGIA----------- 327
Query: 401 XXXXXXDHGKVILQFGKVGKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE 451
D VILQFGK+ D FTMDYR PLSAFQAFAICLTSF TKLACE
Sbjct: 328 ------DEETVILQFGKIEDDAFTMDYRQPLSAFQAFAICLTSFGTKLACE 372
>Os05g0560400 Tubby family protein
Length = 349
Score = 212 bits (539), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 102/212 (48%), Positives = 143/212 (67%), Gaps = 7/212 (3%)
Query: 62 LPPELLRDVMKRLE-EGESNWPSRKDVVACAAVCRTWREICKDIVQSPEICGKLTFPVSL 120
L PEL+ +V++R+E G WP+RKD+V+CA VCR WRE +V+ G++TFP SL
Sbjct: 27 LLPELVEEVVRRVEASGGERWPARKDLVSCACVCRRWREAAAAVVRPLPESGRITFPSSL 86
Query: 121 KQPGPRDGLIQCFIKRDKSKLTYYLYLCLSPAVLSENGKFLLAAKRNRRATSTEYIISVD 180
KQPGP+D IQCF+KR+K K +YLYL L + + GKFL+AA+R RR TEY+IS+D
Sbjct: 87 KQPGPKDFPIQCFVKRNKKKSMFYLYLGLLNGTM-DKGKFLMAARRFRRGPHTEYVISLD 145
Query: 181 SKNISRSSNGYVGKMRSNFLGTKFVVYDTQPPYNAGSLMSCQHGSR-----RISSRRVSP 235
+ ++S+ SN YVGK+RS+F GT F +YD QPPY+ S + R R SRR+ P
Sbjct: 146 ADDLSQGSNAYVGKLRSDFWGTNFKIYDNQPPYDDAKTSSTRSSQRFGSTHRFGSRRICP 205
Query: 236 KLPTGSYPIAHVKYELNVLGTRGPRRMQCTMH 267
++ G++ + + Y+ N+L +RGPRRM CTM
Sbjct: 206 QISAGNFNVGQISYKYNLLKSRGPRRMFCTME 237
Score = 115 bits (288), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 59/104 (56%), Positives = 63/104 (60%), Gaps = 17/104 (16%)
Query: 343 VLRNKVPRWHEQLQCWCLNFRGRVTVASVKNFXXXXXXXXXXXXXXXXXXXXXXXXXXXX 402
VLRNK PRWHE LQCWCLNF GRVTVASVKNF
Sbjct: 261 VLRNKAPRWHEHLQCWCLNFHGRVTVASVKNF-----------------QLVATADPSHP 303
Query: 403 XXXXDHGKVILQFGKVGKDMFTMDYRYPLSAFQAFAICLTSFDT 446
D VILQFGKV ++FTMDYR PLSAFQAFAICL+SF+T
Sbjct: 304 DSVGDEETVILQFGKVDSNIFTMDYRQPLSAFQAFAICLSSFET 347
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.137 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,033,844
Number of extensions: 554259
Number of successful extensions: 1322
Number of sequences better than 1.0e-10: 12
Number of HSP's gapped: 1302
Number of HSP's successfully gapped: 30
Length of query: 451
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 347
Effective length of database: 11,605,545
Effective search space: 4027124115
Effective search space used: 4027124115
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 158 (65.5 bits)