Os05g0560400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Tubby family protein.
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Os05g0560400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Tubby family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 51.63 | 0.338 | 8.61 | 0.264 | 1.14 | -0.409 | -0.495 | -0.814 | 0.148 | 10.2 | 21.3 | 900 | -- | -- |
| 52.94 | 0.339 | 8.58 | 0.461 | 1.15 | -0.353 | -0.258 | -- | 0.204 | 10.2 | 21.9 | 1022 | -- | -- |
| 52.47 | 0.337 | 8.61 | 0.291 | 1.15 | -0.391 | -- | -0.615 | 0.155 | 10.2 | 21.6 | 1019 | -- | -- |
| 53.05 | 0.339 | 8.59 | 0.419 | 1.16 | -0.302 | -- | -- | 0.22 | 10.2 | 23.39 | 1108 | -- | -- |
| 110.33 | 0.489 | 8.61 | 0.558 | -- | -0.91 | -- | -0.0275 | 0.364 | -- | 25.3 | 759 | -- | -- |
| 57.46 | 0.355 | 8.61 | 0.328 | 1.21 | -- | -0.265 | -- | 0.095 | 10.3 | -- | -- | -- | -- |
| 57.74 | 0.356 | 8.61 | 0.317 | 1.21 | -- | -- | -- | 0.0943 | 10.3 | -- | -- | -- | -- |
| 109.53 | 0.487 | 8.57 | 0.573 | -- | -0.911 | -- | -- | 0.418 | -- | 25.2 | 762 | -- | -- |
| 57.72 | 0.354 | 8.59 | -- | 1.17 | -0.229 | -- | -- | 0.15 | 10.2 | 23.4 | 1065 | -- | -- |
| 146.31 | 0.565 | 8.64 | 0.299 | -- | -- | -- | -- | 0.0913 | -- | -- | -- | -- | -- |
| 60.39 | 0.364 | 8.62 | -- | 1.2 | -- | -- | -- | 0.059 | 10.2 | -- | -- | -- | -- |
| 117.75 | 0.505 | 8.59 | -- | -- | -0.813 | -- | -- | 0.323 | -- | 25.3 | 761 | -- | -- |
| 148.66 | 0.569 | 8.65 | -- | -- | -- | -- | -- | 0.0581 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 48.64 | temperature | 25.0 | 720 | > th | dose independent | rect. | 8 | 1 |
| 2 | 49.25 | temperature | 25.0 | 270 | > th | dose independent | rect. | 7 | 11 |
| 8 | 49.73 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 10 | 49.80 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 23 | 12 |
| 12 | 49.99 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 4 | 3 |
| 14 | 50.01 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 1 | 10 |
| 17 | 50.03 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 4 | 9 |
| 26 | 50.20 | temperature | 25.0 | 270 | < th | dose independent | rect. | 4 | 11 |
| 29 | 50.24 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 7 | 11 |
| 30 | 50.25 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 4 | 14 |
| 34 | 50.28 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 24 | 17 |
| 42 | 50.33 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 23 | 5 |
| 45 | 50.34 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 8 | 1 |
| 68 | 50.50 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 4 | 17 |
| 85 | 50.59 | temperature | 25.0 | 270 | > th | dose independent | rect. | 1 | 17 |
| 97 | 50.63 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 1 | 3 |
| 109 | 50.67 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 4 | 19 |
| 121 | 50.74 | temperature | 25.0 | 720 | < th | dose independent | rect. | 4 | 6 |
| 136 | 50.80 | radiation | 1.0 | 30 | < th | dose independent | rect. | 3 | 5 |
| 145 | 50.82 | temperature | 20.0 | 720 | > th | dose independent | rect. | 23 | 5 |
| 166 | 50.89 | humidity | 90.0 | 30 | < th | dose independent | rect. | 20 | 12 |
| 183 | 50.95 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 7 | 4 |
| 186 | 50.96 | temperature | 20.0 | 720 | > th | dose independent | rect. | 1 | 3 |
| 191 | 50.97 | temperature | 20.0 | 720 | > th | dose independent | rect. | 1 | 1 |
| 202 | 50.98 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 16 | 19 |
| 212 | 51.01 | radiation | 10.0 | 30 | < th | dose dependent | sin | 5 | NA |
| 216 | 51.03 | radiation | 10.0 | 30 | < th | dose dependent | rect. | 3 | 7 |
| 223 | 51.06 | temperature | 25.0 | 270 | > th | dose independent | sin | 1 | NA |
| 260 | 51.16 | radiation | 1.0 | 30 | < th | dose independent | rect. | 3 | 3 |
| 265 | 51.17 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 5 | 21 |
| 276 | 51.20 | temperature | 30.0 | 720 | < th | dose dependent | sin | 7 | NA |
| 278 | 51.20 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 21 | 7 |
| 282 | 51.20 | radiation | 10.0 | 30 | < th | dose dependent | rect. | 3 | 11 |
| 293 | 51.22 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 8 | 12 |
| 295 | 51.23 | temperature | 30.0 | 270 | < th | dose dependent | sin | 1 | NA |
| 311 | 51.26 | temperature | 25.0 | 270 | < th | dose independent | sin | 1 | NA |
| 322 | 51.28 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 3 | 3 |
| 330 | 51.29 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 22 | 14 |
| 353 | 51.32 | temperature | 15.0 | 720 | > th | dose dependent | sin | 7 | NA |
| 428 | 51.44 | radiation | 1.0 | 90 | > th | dose independent | sin | 6 | NA |
| 429 | 51.44 | humidity | 70.0 | 270 | > th | dose independent | rect. | 14 | 9 |
| 448 | 51.46 | humidity | 70.0 | 90 | > th | dose independent | rect. | 15 | 11 |
| 463 | 51.49 | radiation | 1.0 | 90 | < th | dose independent | sin | 6 | NA |
| 471 | 51.50 | temperature | 20.0 | 720 | > th | dose independent | rect. | 23 | 10 |
| 493 | 51.53 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 3 | 2 |
| 512 | 51.55 | temperature | 30.0 | 90 | < th | dose independent | rect. | 5 | 21 |
| 545 | 51.58 | temperature | 20.0 | 270 | > th | dose dependent | sin | 2 | NA |
| 566 | 51.60 | temperature | 20.0 | 720 | > th | dose independent | rect. | 23 | 12 |
| 593 | 51.62 | radiation | 10.0 | 30 | < th | dose dependent | rect. | 3 | 14 |
| 617 | 51.65 | radiation | 30.0 | 270 | < th | dose dependent | rect. | 12 | 12 |
| 623 | 51.66 | humidity | 80.0 | 30 | > th | dose independent | rect. | 3 | 2 |
| 634 | 51.66 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 23 | 19 |
| 666 | 51.69 | radiation | 20.0 | 270 | < th | dose independent | rect. | 13 | 11 |
| 688 | 51.71 | temperature | 20.0 | 720 | > th | dose independent | rect. | 16 | 19 |
| 706 | 51.72 | temperature | 25.0 | 30 | > th | dose independent | rect. | 20 | 11 |
| 710 | 51.72 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 739 | 51.74 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 759 | 51.75 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 7 | 22 |
| 789 | 51.78 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 20 | 11 |
| 794 | 51.79 | temperature | 20.0 | 720 | < th | dose independent | rect. | 24 | 6 |
| 823 | 51.81 | temperature | 30.0 | 10 | < th | dose independent | rect. | 5 | 22 |
| 834 | 51.82 | temperature | 20.0 | 720 | < th | dose independent | rect. | 4 | 2 |
| 854 | 51.83 | temperature | 15.0 | 30 | > th | dose independent | rect. | 5 | 22 |
| 855 | 51.83 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 3 | 2 |
| 941 | 51.87 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 17 | 1 |