BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0560400 Os05g0560400|Os05g0560400
(349 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0560400 Tubby family protein 597 e-171
Os05g0514300 Similar to Tubby-like protein 3 387 e-108
Os01g0759100 Tubby family protein 336 1e-92
Os07g0667000 Similar to Tubby-like protein 3 305 5e-83
Os03g0351400 Similar to Tubby-like protein 3 275 3e-74
Os08g0103300 Similar to Tubby-like protein 3 256 2e-68
Os12g0163400 Tubby family protein 226 2e-59
Os11g0163600 Tubby family protein 209 2e-54
Os05g0437900 Tubby family protein 179 3e-45
Os04g0687900 Similar to T24D18.17 protein (Tubby-like prote... 172 5e-43
Os02g0705300 Tubby family protein 167 1e-41
Os01g0866800 Similar to F24P17.15 protein (Tubby-like prote... 158 4e-39
>Os05g0560400 Tubby family protein
Length = 349
Score = 597 bits (1540), Expect = e-171, Method: Compositional matrix adjust.
Identities = 286/303 (94%), Positives = 286/303 (94%)
Query: 47 WPARKDLVSXXXXXXXXXXXXXXXXXPLPESGRITFPSSLKQPGPKDFPIQCFVKRNKKK 106
WPARKDLVS PLPESGRITFPSSLKQPGPKDFPIQCFVKRNKKK
Sbjct: 47 WPARKDLVSCACVCRRWREAAAAVVRPLPESGRITFPSSLKQPGPKDFPIQCFVKRNKKK 106
Query: 107 SMFYLYLGLLNGTMDKGKFLMAARRFRRGPHTEYVISLDADDLSQGSNAYVGKLRSDFWG 166
SMFYLYLGLLNGTMDKGKFLMAARRFRRGPHTEYVISLDADDLSQGSNAYVGKLRSDFWG
Sbjct: 107 SMFYLYLGLLNGTMDKGKFLMAARRFRRGPHTEYVISLDADDLSQGSNAYVGKLRSDFWG 166
Query: 167 TNFKIYDNQPPYDDAKTSSTRSSQRFGSTHRFGSRRICPQISAGNFNVGQISYKYNLLKS 226
TNFKIYDNQPPYDDAKTSSTRSSQRFGSTHRFGSRRICPQISAGNFNVGQISYKYNLLKS
Sbjct: 167 TNFKIYDNQPPYDDAKTSSTRSSQRFGSTHRFGSRRICPQISAGNFNVGQISYKYNLLKS 226
Query: 227 RGPRRMFCTMECPSTQETWENSLKTKSLRCTGTTVLRNKAPRWHEHLQCWCLNFHGRVTV 286
RGPRRMFCTMECPSTQETWENSLKTKSLRCTGTTVLRNKAPRWHEHLQCWCLNFHGRVTV
Sbjct: 227 RGPRRMFCTMECPSTQETWENSLKTKSLRCTGTTVLRNKAPRWHEHLQCWCLNFHGRVTV 286
Query: 287 ASVKNFQLVATADPSHPDSVGDEETVILQFGKVDSNIFTMDYRQPLSAFQAFAICLSSFE 346
ASVKNFQLVATADPSHPDSVGDEETVILQFGKVDSNIFTMDYRQPLSAFQAFAICLSSFE
Sbjct: 287 ASVKNFQLVATADPSHPDSVGDEETVILQFGKVDSNIFTMDYRQPLSAFQAFAICLSSFE 346
Query: 347 TYH 349
TYH
Sbjct: 347 TYH 349
>Os05g0514300 Similar to Tubby-like protein 3
Length = 372
Score = 387 bits (993), Expect = e-108, Method: Compositional matrix adjust.
Identities = 190/301 (63%), Positives = 220/301 (73%), Gaps = 7/301 (2%)
Query: 47 WPARKDLVSXXXXXXXXXXXXXXXXXPLPESGRITFPSSLKQPGPKDFPIQCFVKRNKKK 106
WP R+D+V+ P E GRITFPSSLKQPGP+D P+ CF++RNKK
Sbjct: 74 WPPRRDVVACACVCRRWRDAAVSVVRPPLECGRITFPSSLKQPGPRDAPMHCFIRRNKKN 133
Query: 107 SMFYLYLGLLNGTMDKGKFLMAARRFRRGPHTEYVISLDADDLSQGSNAYVGKLRSDFWG 166
S FYLYL L DKGKFL+AARRFR G HTEY+IS D DDL GSN+YVGKLRSDF G
Sbjct: 134 STFYLYLSLTQALTDKGKFLLAARRFRNGAHTEYIISYDCDDLFPGSNSYVGKLRSDFLG 193
Query: 167 TNFKIYDNQPPYDDAKTSSTRSSQRFGSTHRFGSRRICPQISAGNFNVGQISYKYNLLKS 226
T F IYD+QPPYD AK S ++SS+ RF S++I P +S GN+ VGQ+SYK+N LKS
Sbjct: 194 TKFIIYDSQPPYDGAKPSRSQSSR------RFASKQINPNVSGGNYEVGQVSYKFNFLKS 247
Query: 227 RGPRRMFCTMECPSTQETWENSLKTKSLRCTGTTVLRNKAPRWHEHLQCWCLNFHGRVTV 286
RGPRRM C ++CP Q T + LK K + + LRNKAPRWHEHLQCWCLNFHGRVTV
Sbjct: 248 RGPRRMQCNIQCPVGQSTASDPLK-KLISTSSPLALRNKAPRWHEHLQCWCLNFHGRVTV 306
Query: 287 ASVKNFQLVATADPSHPDSVGDEETVILQFGKVDSNIFTMDYRQPLSAFQAFAICLSSFE 346
ASVKNFQLVA A S P + DEETVILQFGK++ + FTMDYRQPLSAFQAFAICL+SF
Sbjct: 307 ASVKNFQLVAPAGTSDPWGIADEETVILQFGKIEDDAFTMDYRQPLSAFQAFAICLTSFG 366
Query: 347 T 347
T
Sbjct: 367 T 367
>Os01g0759100 Tubby family protein
Length = 368
Score = 336 bits (862), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 166/303 (54%), Positives = 209/303 (68%), Gaps = 12/303 (3%)
Query: 47 WPARKDLVSXXXXXXXXXXXXXXXXXPLPESGRITFPSSLKQPGPKDFPIQCFVKRNKKK 106
WP R+D+V+ P ESG+ITFPSSLKQPGP+D P+QCF+KRNKK
Sbjct: 73 WPPRRDVVACASVCRRWRDVAVAVVQPPLESGKITFPSSLKQPGPRDAPMQCFIKRNKKN 132
Query: 107 SMFYLYLGLLNGTMDKGKFLMAARRFRRGPHTEYVISLDADDLSQGSNAYVGKLRSDFWG 166
S F+LYLGL D KFL+AARR RRG H EY I++++D L GS + VG L+S+F G
Sbjct: 133 STFFLYLGLTQELTDDEKFLLAARRCRRGLHKEYAITINSDGLFHGSQSCVGNLKSNFTG 192
Query: 167 TNFKIYDNQPPYDDAKTSSTRSSQRFGSTHRFGSRRICPQISAGNFNVGQISYKYNLLKS 226
T F I D QPPY+ AK S+RS + FG+ HR CP +S G+ VG++SYKY+LL+
Sbjct: 193 TKFTIRDWQPPYEGAKAFSSRSGRWFGNKHR------CPLVSTGDVEVGEVSYKYSLLRP 246
Query: 227 RGPRRMFCTMECPSTQETWENSLKTKSLRCT--GTTVLRNKAPRWHEHLQCWCLNFHGRV 284
RGPRRM C+++CP + T + K L + + VL +K P WHEHLQCWCLNFHGRV
Sbjct: 247 RGPRRMSCSVQCPVLKGTAVDPQDGKRLSNSIPSSLVLNSKVPSWHEHLQCWCLNFHGRV 306
Query: 285 TVASVKNFQLVATADPSHPDSVGDEETVILQFGKVDSNIFTMDYRQPLSAFQAFAICLSS 344
VASVKNFQL+A +P P ++TV+LQFGK+D ++FTMDYRQPLSAFQAFAICLS+
Sbjct: 307 MVASVKNFQLIAPVEPGEP----SDKTVVLQFGKIDDDVFTMDYRQPLSAFQAFAICLSN 362
Query: 345 FET 347
F T
Sbjct: 363 FGT 365
>Os07g0667000 Similar to Tubby-like protein 3
Length = 406
Score = 305 bits (780), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 163/333 (48%), Positives = 211/333 (63%), Gaps = 40/333 (12%)
Query: 47 WPARKDLVSXXXXXXXXXXXXXXXXXPLPESGRITFPSSLKQPGPKDFPIQCFVKRNKKK 106
WP R+D+V+ SG +TFP SLKQPGP+D P++CF+ RN+
Sbjct: 77 WPRRRDVVACAGVCRSWRGIVREIVRTPEASGNLTFPISLKQPGPRDAPMKCFIVRNRTT 136
Query: 107 SMFYLYLGLLNGTMDKGKFLMAARRFRRGPHTEYVISLDADDLSQGSNAYVGKLRSDFWG 166
+YLY+GL + D GKFL+AAR+ RR TEY+ISLD +D+S+ +++YVGKLRS+F G
Sbjct: 137 QTYYLYIGLTDALTDDGKFLLAARKCRRTTCTEYLISLDMNDISKRTDSYVGKLRSNFLG 196
Query: 167 TNFKIYDNQPPYDDAKTSSTRSSQRFGSTHRFGSRRICPQISAGNFNVGQISYKYNLLKS 226
T F IYD PPY S +S++ GS H + P+I AGN+ V ISY+ N+L S
Sbjct: 197 TKFTIYDAHPPYAGDVISKGQSARVIGSNH------LSPRIPAGNYPVSHISYELNVLGS 250
Query: 227 RGPRRMFCTME------------CPSTQE---TWENS------LKTKSLRCTGTT----- 260
RGPRRM C M+ P+ E ++ S K+KS+R +T
Sbjct: 251 RGPRRMHCAMDSIPVSAIEQGGTAPTQTEFPLSYHESFTSIPFFKSKSVRANNSTASLLT 310
Query: 261 ------VLRNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVATADPSHPDSVGDEETVIL 314
VL+NK+PRWHEHLQCWCLNFHGRVTVASVKNFQLVA+ D S+P + + + VIL
Sbjct: 311 QNGSKLVLKNKSPRWHEHLQCWCLNFHGRVTVASVKNFQLVAS-DESNPTN-QEHDDVIL 368
Query: 315 QFGKVDSNIFTMDYRQPLSAFQAFAICLSSFET 347
QFGKV ++FTMDYR P+SAFQAFAICLSSF+T
Sbjct: 369 QFGKVGKDMFTMDYRYPISAFQAFAICLSSFDT 401
>Os03g0351400 Similar to Tubby-like protein 3
Length = 296
Score = 275 bits (704), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 143/298 (47%), Positives = 189/298 (63%), Gaps = 42/298 (14%)
Query: 84 SSLK--QPGPKDFPIQCFVKRNKKKSMFYLYLGLLNGTMDKGKFLMAARRFRRGPHTEYV 141
SSL+ QPGP+D ++CF++RN+ +YLY+GL D GKFL+AAR+ R+ T+Y+
Sbjct: 2 SSLRDVQPGPRDGTLKCFIRRNRTTQTYYLYIGLTEALADDGKFLLAARKCRKPTCTDYL 61
Query: 142 ISLDADDLSQGSNAYVGKLRSDFWGTNFKIYDNQPPYDDAKTSSTRSSQRFGSTHRFGSR 201
ISLD D+S+GSN Y+GKLRS+F GT F +YD PPYD A S +RS++ G
Sbjct: 62 ISLDMSDMSKGSNTYIGKLRSNFLGTKFTVYDAHPPYDGAVVSKSRSARVVGLNQ----- 116
Query: 202 RICPQISAGNFNVGQISYKYNLLKSRGPRRMFCTMECPSTQETWENS------------- 248
+ P++ AGN+ V ISY+ N+L +RGPRRM C M+ T E
Sbjct: 117 -VSPRVPAGNYPVSHISYELNVLGARGPRRMNCIMDSIPTSAVQEGGKAPTQTEFPLSGL 175
Query: 249 --------LKTKSLRCTGTT-----------VLRNKAPRWHEHLQCWCLNFHGRVTVASV 289
++KS R T VL+NK+PRWHE LQCWCLNF GRVTVASV
Sbjct: 176 DSFPSISFFRSKSARIDSATSQLSTQKEEKLVLKNKSPRWHEQLQCWCLNFRGRVTVASV 235
Query: 290 KNFQLVATADPSHPDSVGDEETVILQFGKVDSNIFTMDYRQPLSAFQAFAICLSSFET 347
KNFQLVA+ D + P + +++ VILQFGK+ ++FTMDYR P+SAFQ+FAICLSSF+T
Sbjct: 236 KNFQLVAS-DENGPTN-QEQDKVILQFGKIGKDLFTMDYRYPISAFQSFAICLSSFDT 291
>Os08g0103300 Similar to Tubby-like protein 3
Length = 451
Score = 256 bits (653), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 154/371 (41%), Positives = 195/371 (52%), Gaps = 75/371 (20%)
Query: 47 WPARKDLVSXXXXXXXXXXXXXXXXXPLPESGRITFPSSLKQPGPKDFPIQCFVKRNKKK 106
WP+RKD+V+ G++TFP SLKQPGP+D IQCF+KR+K K
Sbjct: 81 WPSRKDVVACAAVCRTWREICKDIVQSPEICGKLTFPVSLKQPGPRDGLIQCFIKRDKSK 140
Query: 107 SMFYLYLGLLNGTM-DKGKFLMAARRFRRGPHTEYVISLDADDLSQGSNAYVGKLRSDFW 165
+YLYL L + + GKFL+AA+R RR TEY+IS+D+ ++S+ SN YVGK+RS+F
Sbjct: 141 LTYYLYLCLSPAVLSENGKFLLAAKRNRRATSTEYIISVDSKNISRSSNGYVGKMRSNFL 200
Query: 166 GTNFKIYDNQPPYDDAKTSSTRSSQRFGSTHRFGSRRICPQISAGNFNVGQISYKYNLLK 225
GT F +YD QPPY+ S + R S+ R P++ G++ + + Y+ N+L
Sbjct: 201 GTKFVVYDTQPPYNAGSLMSCQHGSRRISSRRVS-----PKLPTGSYPIAHVKYELNVLG 255
Query: 226 SRGPRRMFCTME------------CPSTQETWENSLKTKSLRCTGTT------------- 260
+RGPRRM CTM P E +S R T T+
Sbjct: 256 TRGPRRMQCTMHSIPASAVDPEGVVPGQPEQLLPGPFEESFRSTNTSSRFSFMDRSLDFS 315
Query: 261 ---------------------------VLRNKAPRWHEHLQCWCLNFHGRVTVASVKNFQ 293
VLRNK PRWHE LQCWCLNF GRVTVASVKNFQ
Sbjct: 316 SSRFSEISGSANQQGEDDIPEAKERPLVLRNKVPRWHEQLQCWCLNFRGRVTVASVKNFQ 375
Query: 294 LVATA-----------------DPSHPDSVGDEETVILQFGKVDSNIFTMDYRQPLSAFQ 336
L+A A S S D VILQFGKV ++FTMDYR PLSAFQ
Sbjct: 376 LIAAASSESSQLEQQQQQQQQNHASSSSSASDHGKVILQFGKVGKDMFTMDYRYPLSAFQ 435
Query: 337 AFAICLSSFET 347
AFAICL+SF+T
Sbjct: 436 AFAICLTSFDT 446
>Os12g0163400 Tubby family protein
Length = 445
Score = 226 bits (576), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 141/365 (38%), Positives = 192/365 (52%), Gaps = 69/365 (18%)
Query: 47 WPARKDLVSXXXXXXXXXXXXXXXXXPLPESGRITFPSSLKQPGPKDFPIQCFVKRNKKK 106
WP+RK++V+ G+ITFP SLKQPGP++ IQCF+KR+K
Sbjct: 81 WPSRKNVVACAAVCRTWRDMCREIVKNPEFCGKITFPVSLKQPGPRNGAIQCFIKRDKST 140
Query: 107 SMFYLYLGLLNGTM-DKGKFLMAARRFRRGPHTEYVISLDADDLSQGSNAYVGKLRSDFW 165
+ LYL L + + + GKFL++A+R+ R TEY I + AD+ S+ SN Y+GKLRS+
Sbjct: 141 QTYNLYLCLSSAVLVESGKFLLSAKRYSRATCTEYTIFMSADNTSRSSNMYIGKLRSNLL 200
Query: 166 GTNFKIYDNQPPYDDAKTSSTRSSQRFGSTHRFGSRRICPQISAGNFNVGQISYKYNLLK 225
GT F IYD QPP + A S + + R RF SR++ P+ + +++ Q+SY+ N+L
Sbjct: 201 GTKFVIYDTQPPCNTANVSQSGKTSR-----RFYSRKVSPKNPSSTYSIAQVSYELNVLG 255
Query: 226 SRGPRRMFCTM--------ECPSTQETWENSLKTKSLRCTGTTV-----------LRNKA 266
+RGPRRM C M E T +S+ +SL + ++ +R +
Sbjct: 256 TRGPRRMNCVMHSIPASSLEAGGTVPCQPDSVLARSLDESFGSISFSKSSIMDRSIRFSS 315
Query: 267 PRWHE---------------------------------HLQCWC--LNFHGRVTVASVKN 291
R+ + H Q C LNF GRVTVASVKN
Sbjct: 316 SRYSDISVGGPMVGGQALGDSDESKERPLILRNKAPRWHEQLQCWCLNFKGRVTVASVKN 375
Query: 292 FQLVATADPS---------HPDSVGDEETVILQFGKVDSNIFTMDYRQPLSAFQAFAICL 342
FQLVA P+ P D + VILQFGKV ++FTMDYR PLSAFQAFAICL
Sbjct: 376 FQLVAATQPAAGAPTPSQPAPPPPPDHDKVILQFGKVAKDMFTMDYRYPLSAFQAFAICL 435
Query: 343 SSFET 347
SSF+T
Sbjct: 436 SSFDT 440
>Os11g0163600 Tubby family protein
Length = 317
Score = 209 bits (533), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 125/318 (39%), Positives = 169/318 (53%), Gaps = 72/318 (22%)
Query: 96 IQCFVKRNKKKSMFYLYLGLLNGTM-DKGKFLMAARRFRRGPHTEYVISLDADDLSQGSN 154
+QCF++R+K +YLYL L + + D GKFL++A+R TEYVIS++A++LS+ +N
Sbjct: 1 MQCFIRRDKSTQTYYLYLSLGSAVLVDNGKFLLSAKRNWHATCTEYVISMNANNLSRSTN 60
Query: 155 AYVGKLRSDFWGTNFKIYDNQPPYDDAKTSSTRSSQRFGSTHRFGSRRICPQISAGNFNV 214
+GKLRS+F GT F IYD PY+ +T SQ ++ RF ++ +++
Sbjct: 61 TNIGKLRSNFLGTKFVIYDTHTPYN-----ATSDSQSGKTSRRFSNKGTAKH-PCSTYSI 114
Query: 215 GQISYKYNLLKSRGPRRMFC--------TMECPSTQETWENSLKTKSL------------ 254
ISY+ N+ +RGPRRM C ++E T + +S+ SL
Sbjct: 115 ANISYELNVFGTRGPRRMCCLMHSIPASSLEAGGTVPSQPDSILAHSLNESSFRSVSFSK 174
Query: 255 -----------------------------------RCTGT-TVLRNKAPRWHEHLQCWCL 278
C T +L+NKAPRWHE LQCWCL
Sbjct: 175 SSVMDHSMHFSSAQFSDISIGDGPRIGGRVLSDDEECKETPLILQNKAPRWHEQLQCWCL 234
Query: 279 NFHGRVTVASVKNFQLVATADPS---------HPDSVGDEETVILQFGKVDSNIFTMDYR 329
NF GRVTVASVKNFQL+A P+ P + + VILQFGKV ++FTMDY
Sbjct: 235 NFRGRVTVASVKNFQLIAATQPAAGAPTPSQPVPPPPPEHDKVILQFGKVAKDMFTMDYH 294
Query: 330 QPLSAFQAFAICLSSFET 347
PLSAFQAFAI LSSF+T
Sbjct: 295 YPLSAFQAFAISLSSFDT 312
>Os05g0437900 Tubby family protein
Length = 445
Score = 179 bits (454), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 88/191 (46%), Positives = 124/191 (64%), Gaps = 6/191 (3%)
Query: 47 WPARKDLVSXXXXXXXXXXXXXXXXXPLPESGRITFPSSLKQPGPKDFPIQCFVKRNKKK 106
WP+RKD+VS G++TFP SLKQPGP+D IQCF+KR+K K
Sbjct: 81 WPSRKDVVSCAAVCKAWREMCKEIVLSPEFCGKLTFPLSLKQPGPRDGMIQCFIKRDKSK 140
Query: 107 SMFYLYLGLLNGTM-DKGKFLMAARRFRRGPHTEYVISLDADDLSQGSNAYVGKLRSDFW 165
S ++LYL L + D GKFL++A+R R+ TEYVIS+DAD++S+ S+ Y+GKLRS+F
Sbjct: 141 STYHLYLCLSTAVLADSGKFLLSAKRHRKTTCTEYVISMDADNISRSSSTYIGKLRSNFL 200
Query: 166 GTNFKIYDNQPPYDDAKTSSTRSSQRFGSTHRFGSRRICPQISAGNFNVGQISYKYNLLK 225
GT F IYD QP Y+ A S R RF S+++ P++ +G++N+ Q++Y+ N+L
Sbjct: 201 GTKFIIYDTQPSYNGAVIPPVGRSSR-----RFNSKKVSPKMPSGSYNIAQVTYELNVLG 255
Query: 226 SRGPRRMFCTM 236
+RGPRRM C M
Sbjct: 256 TRGPRRMHCVM 266
Score = 129 bits (324), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 62/98 (63%), Positives = 73/98 (74%), Gaps = 15/98 (15%)
Query: 261 VLRNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLV-----------ATADPSHPDSVGDE 309
VLRNKAPRWHE LQCWCLNF GRVT+ASVKNFQL+ + P+ P ++
Sbjct: 347 VLRNKAPRWHEQLQCWCLNFRGRVTIASVKNFQLIAAPAQPPAGAPTPSQPAPP----EQ 402
Query: 310 ETVILQFGKVDSNIFTMDYRQPLSAFQAFAICLSSFET 347
+ +ILQFGKV ++FTMDYR PLSAFQAFAICLSSF+T
Sbjct: 403 DKIILQFGKVAKDMFTMDYRYPLSAFQAFAICLSSFDT 440
>Os04g0687900 Similar to T24D18.17 protein (Tubby-like protein TULP8)
Length = 462
Score = 172 bits (435), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 84/191 (43%), Positives = 123/191 (64%), Gaps = 6/191 (3%)
Query: 47 WPARKDLVSXXXXXXXXXXXXXXXXXPLPESGRITFPSSLKQPGPKDFPIQCFVKRNKKK 106
WP+RKD+V+ G++TFP SLKQPGP+D IQCF+KR+K K
Sbjct: 78 WPSRKDVVACASVCTTWRDMCKDIVRNPEFCGKLTFPVSLKQPGPRDGVIQCFIKRDKSK 137
Query: 107 SMFYLYLGLLNGTMDK-GKFLMAARRFRRGPHTEYVISLDADDLSQGSNAYVGKLRSDFW 165
++LYL L + +D+ GKFL++A+R RR HT+Y+IS+D+ ++S+ S+ Y+GKLRS+F
Sbjct: 138 LTYHLYLCLSSAVLDETGKFLLSAKRSRRTTHTDYIISMDSKNISRSSSGYIGKLRSNFL 197
Query: 166 GTNFKIYDNQPPYDDAKTSSTRSSQRFGSTHRFGSRRICPQISAGNFNVGQISYKYNLLK 225
GT F IYD QPPY+ S + R RF SR++ P++ G + + Q++Y+ N+L
Sbjct: 198 GTKFIIYDTQPPYNARTLCSQERTSR-----RFSSRKVSPKVPTGCYPIVQVNYELNVLG 252
Query: 226 SRGPRRMFCTM 236
+RGPRRM C M
Sbjct: 253 TRGPRRMQCAM 263
Score = 126 bits (316), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 66/115 (57%), Positives = 72/115 (62%), Gaps = 29/115 (25%)
Query: 261 VLRNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVATADPSHPDSVGDE----------- 309
VLRNKAPRWHE LQCWCLNF GRVTVASVKNFQL+A A P E
Sbjct: 344 VLRNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAAA-PQPSSGAASEPSQAGQAAQQQ 402
Query: 310 -----------------ETVILQFGKVDSNIFTMDYRQPLSAFQAFAICLSSFET 347
+TVILQFGKV ++FTMDYR PLSAFQAFAICL+SF+T
Sbjct: 403 TQPSQPSSSSSSSSSNHDTVILQFGKVAKDMFTMDYRYPLSAFQAFAICLTSFDT 457
>Os02g0705300 Tubby family protein
Length = 326
Score = 167 bits (422), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 85/193 (44%), Positives = 119/193 (61%), Gaps = 12/193 (6%)
Query: 47 WPARKDLVSXXXXXXXXXXXXXXXXXPLPESGRITFPSSLKQPGPKDFPIQCFVKRNKKK 106
WPAR+ +V+ L E GRITFP SLKQPGP++ P+QCFV+R++
Sbjct: 90 WPARRQVVACAAVCRSWREVTKEVVKTLEECGRITFPISLKQPGPREHPVQCFVRRDRAT 149
Query: 107 SMFYLYLGL---LNGTMDKGKFLMAARRFRRGPHTEYVISLDADDLSQGSNAYVGKLRSD 163
S + LYLGL L+G DK L+AAR+ RR T +VISL ++D S S+ YVGKL+ +
Sbjct: 150 STYLLYLGLSPSLHGENDK--LLLAARKIRRATRTSFVISLVSNDFSLSSSTYVGKLKPN 207
Query: 164 FWGTNFKIYDNQPPYDDAKTSSTRSSQRFGSTHRFGSRRICPQISAGNFNVGQISYKYNL 223
F GT F I+D+QPP D + R S+R +++ P++ GN+NV +SY+ +
Sbjct: 208 FLGTKFTIFDSQPPCDAVVLPNNRPSKRH-------FKQVSPRLPLGNYNVATVSYELTV 260
Query: 224 LKSRGPRRMFCTM 236
L++RGPRRM CTM
Sbjct: 261 LRNRGPRRMQCTM 273
>Os01g0866800 Similar to F24P17.15 protein (Tubby-like protein TULP9)
Length = 448
Score = 158 bits (400), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 81/192 (42%), Positives = 120/192 (62%), Gaps = 8/192 (4%)
Query: 47 WPARKDLVSXXXXXXXXXXXXXXXXXPLPESGRITFPSSLKQPGPKDFPIQCFVKRNKKK 106
WP+R+++V G++TFP S+KQPGP+D IQC++KRN+ K
Sbjct: 81 WPSRRNVVCFAAVCRTWREMCKETVLSPEFCGKLTFPVSIKQPGPRDGMIQCYIKRNRSK 140
Query: 107 SMFYLYLGLLNG-TMDKGKFLMAARRFRRGPHTEYVISLDADDLSQGSNAYVGKLRSDFW 165
S ++LYL L N T + GKF++AA+R R+ TEY IS+ + ++S+ S +GKLRS+F
Sbjct: 141 STYHLYLCLSNVVTAEGGKFVLAAKRHRKTTCTEYTISMVSGNISRSSRTNIGKLRSNFL 200
Query: 166 GTNFKIYDNQPPYDDAKTSST-RSSQRFGSTHRFGSRRICPQISAGNFNVGQISYKYNLL 224
GT F IYD QPPY+ A R+S+RF ST ++ P++ + +N+ Q+SY+ N+L
Sbjct: 201 GTKFIIYDTQPPYNGAVVPHVGRTSKRFNST------KVSPKVPSVTYNIAQVSYELNVL 254
Query: 225 KSRGPRRMFCTM 236
+RGPRRM C M
Sbjct: 255 GTRGPRRMRCMM 266
Score = 129 bits (325), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 66/95 (69%), Positives = 70/95 (73%), Gaps = 9/95 (9%)
Query: 261 VLRNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLV--------ATADPSHPDSVGDEETV 312
VLRNK PRWHE LQCWCLNF GRVT+ASVKNFQLV PS P D E V
Sbjct: 350 VLRNKPPRWHEQLQCWCLNFRGRVTIASVKNFQLVAAPSPPPAGAPTPSQPGP-ADPEKV 408
Query: 313 ILQFGKVDSNIFTMDYRQPLSAFQAFAICLSSFET 347
ILQFGKV ++FTMDYR PLSAFQAFAICLSSF+T
Sbjct: 409 ILQFGKVARDMFTMDYRYPLSAFQAFAICLSSFDT 443
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.135 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,022,204
Number of extensions: 406407
Number of successful extensions: 786
Number of sequences better than 1.0e-10: 12
Number of HSP's gapped: 751
Number of HSP's successfully gapped: 18
Length of query: 349
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 247
Effective length of database: 11,709,973
Effective search space: 2892363331
Effective search space used: 2892363331
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 156 (64.7 bits)