BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0147000 Os12g0147000|Os12g0147000
(387 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0147000 Protein of unknown function DUF296 domain cont... 509 e-145
Os11g0149100 Protein of unknown function DUF296 domain cont... 353 1e-97
Os10g0572900 Protein of unknown function DUF296 domain cont... 165 4e-41
Os02g0125200 HMG-I and HMG-Y, DNA-binding domain containing... 162 5e-40
Os02g0824300 HMG-I and HMG-Y, DNA-binding domain containing... 161 1e-39
Os04g0589900 HMG-I and HMG-Y, DNA-binding domain containing... 159 3e-39
Os08g0118000 HMG-I and HMG-Y, DNA-binding domain containing... 157 9e-39
Os09g0491708 HMG-I and HMG-Y, DNA-binding domain containing... 150 2e-36
Os08g0512400 HMG-I and HMG-Y, DNA-binding domain containing... 135 4e-32
Os06g0326000 HMG-I and HMG-Y, DNA-binding domain containing... 123 2e-28
Os04g0683900 HMG-I and HMG-Y, DNA-binding domain containing... 108 6e-24
Os03g0105700 Protein of unknown function DUF296 domain cont... 75 6e-14
Os02g0820800 HMG-I and HMG-Y, DNA-binding domain containing... 71 1e-12
Os02g0713700 Protein of unknown function DUF296 domain cont... 71 1e-12
Os09g0464300 71 2e-12
Os02g0448000 Protein of unknown function DUF296 domain cont... 69 6e-12
Os08g0563200 Protein of unknown function DUF296 domain cont... 68 1e-11
>Os12g0147000 Protein of unknown function DUF296 domain containing protein
Length = 387
Score = 509 bits (1312), Expect = e-145, Method: Compositional matrix adjust.
Identities = 283/387 (73%), Positives = 283/387 (73%)
Query: 1 MEGSRSRECIXXXXXXXXXXXXXXXXLFIRTADCSMXXXXXXXXXXXXXKGYRXXXXXXX 60
MEGSRSRECI LFIRTADCSM KGYR
Sbjct: 1 MEGSRSRECIAVASGHEAAAAPAGYGLFIRTADCSMAEAAAQQEAAAAAKGYRSSPSSPS 60
Query: 61 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSLGAGDSGSMQVSGHGEHAGLXXXXX 120
RSLGAGDSGSMQVSGHGEHAGL
Sbjct: 61 SMSPTPSPPPAAAVHGGGGAEDAAAAAIATPAARSLGAGDSGSMQVSGHGEHAGLSSRRR 120
Query: 121 XXXXXXXXXXQILANLGEWYALSAGGSFTPHVIIVATGEDVAARIMSFSQKGPRSVCILA 180
QILANLGEWYALSAGGSFTPHVIIVATGEDVAARIMSFSQKGPRSVCILA
Sbjct: 121 RGRPKGSGRRQILANLGEWYALSAGGSFTPHVIIVATGEDVAARIMSFSQKGPRSVCILA 180
Query: 181 ANGTISNVVLNQPGSSGSTFSYEGCFEILQLTGSFTIAEEGVRRRTGGLSVSLAGPDGRV 240
ANGTISNVVLNQPGSSGSTFSYEGCFEILQLTGSFTIAEEGVRRRTGGLSVSLAGPDGRV
Sbjct: 181 ANGTISNVVLNQPGSSGSTFSYEGCFEILQLTGSFTIAEEGVRRRTGGLSVSLAGPDGRV 240
Query: 241 VGGVVAGMLRAASPIQVIVGSFLPNNLKQHQRRMGLHXXXXXXXXXXXXXXXXXXXXVLT 300
VGGVVAGMLRAASPIQVIVGSFLPNNLKQHQRRMGLH VLT
Sbjct: 241 VGGVVAGMLRAASPIQVIVGSFLPNNLKQHQRRMGLHPQPSAAPAFPAPMAPLHPPPVLT 300
Query: 301 AAMPISQAAPGNNGCRSPQVSISSMPPQAHAGVEQSRGAMNLNSSSSSTGFAMVGWPAAA 360
AAMPISQAAPGNNGCRSPQVSISSMPPQAHAGVEQSRGAMNLNSSSSSTGFAMVGWPAAA
Sbjct: 301 AAMPISQAAPGNNGCRSPQVSISSMPPQAHAGVEQSRGAMNLNSSSSSTGFAMVGWPAAA 360
Query: 361 SSQSMVHRPSPDINFGWGMKQANIRTV 387
SSQSMVHRPSPDINFGWGMKQANIRTV
Sbjct: 361 SSQSMVHRPSPDINFGWGMKQANIRTV 387
>Os11g0149100 Protein of unknown function DUF296 domain containing protein
Length = 366
Score = 353 bits (907), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 208/284 (73%), Positives = 219/284 (77%), Gaps = 13/284 (4%)
Query: 95 SLGAGDSGSMQVSGHGEHAGLXXXXXXXXXXXXXXXQILANLGEWYALSAGGSFTPHVII 154
S AGD+G MQ+SGH EHA L QILA LGEWYALSAGGSFTPHVII
Sbjct: 85 SEAAGDNG-MQMSGHSEHASLSSGRRRGRPKGSGRRQILATLGEWYALSAGGSFTPHVII 143
Query: 155 VATGEDVAARIMSFSQKGPRSVCILAANGTISNVVLNQPGSSGSTFSYEGCFEILQLTGS 214
V TGEDVA RIMSFSQKGPRS+CIL+ANGTISNV L+QPGSSGSTF+YEG FEILQLTGS
Sbjct: 144 VGTGEDVAGRIMSFSQKGPRSICILSANGTISNVALSQPGSSGSTFTYEGRFEILQLTGS 203
Query: 215 FTIAEEGVRRRTGGLSVSLAGPDGRVVGGVVAGMLRAASPIQVIVGSFLPNNLKQHQRRM 274
FT+AEEG RRRTGGLSVSLAGPDGRVVGGVVAGMLRAASPIQVIVGSFLPN+LKQHQRRM
Sbjct: 204 FTMAEEGGRRRTGGLSVSLAGPDGRVVGGVVAGMLRAASPIQVIVGSFLPNSLKQHQRRM 263
Query: 275 GLHXXXXXXXXXXXXXXXXXXXXVLTAAMPISQAAPGNNGCRSPQVSISSMPPQAHAGVE 334
GL VLTAAMPISQAAPG NGC +PQV SSM PQAH GV
Sbjct: 264 GLQ---QQPSAAPALPPPMAPPPVLTAAMPISQAAPGTNGCHAPQV--SSMHPQAHTGVM 318
Query: 335 Q----SRGAMNLNSSSSSTGFAMVGWPAAASSQSMVHRPSPDIN 374
+ + GAMNLN SSSSTGF MVGWP SSQSM HRPSPDIN
Sbjct: 319 EHSATASGAMNLN-SSSSTGFTMVGWP--VSSQSMGHRPSPDIN 359
>Os10g0572900 Protein of unknown function DUF296 domain containing protein
Length = 251
Score = 165 bits (418), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 82/134 (61%), Positives = 103/134 (76%), Gaps = 6/134 (4%)
Query: 136 LGEWYALSAGGSFTPHVIIVATGEDVAARIMSFSQKGPRSVCILAANGTISNVVLNQPGS 195
LG W G +FTPH++ V GEDVA++IM+FSQ+GPR+VCIL+ANG ISNV L QP +
Sbjct: 27 LGSW-----GIAFTPHILTVKAGEDVASKIMAFSQQGPRTVCILSANGAISNVTLRQPAT 81
Query: 196 SGSTFSYEGCFEILQLTGSFTIAEEG-VRRRTGGLSVSLAGPDGRVVGGVVAGMLRAASP 254
SG +YEG FEI+ L+GSF +AE+G R RTGGLSV+LAG DGRV+GG VAGML AA+P
Sbjct: 82 SGGLVTYEGRFEIISLSGSFLLAEDGDTRSRTGGLSVALAGSDGRVLGGCVAGMLMAATP 141
Query: 255 IQVIVGSFLPNNLK 268
+QV+V SF+ K
Sbjct: 142 VQVVVASFIAEGKK 155
>Os02g0125200 HMG-I and HMG-Y, DNA-binding domain containing protein
Length = 388
Score = 162 bits (409), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 83/143 (58%), Positives = 108/143 (75%), Gaps = 2/143 (1%)
Query: 133 LANLGEWYALSAGGSFTPHVIIVATGEDVAARIMSFSQKGPRSVCILAANGTISNVVLNQ 192
L LGE A ++G +FTPH+I VA GEDV +++SFSQ+GPR++CIL+ANG ISNV L Q
Sbjct: 157 LGPLGELVACASGANFTPHIINVAAGEDVNMKVISFSQQGPRAICILSANGVISNVTLRQ 216
Query: 193 PGSSGSTFSYEGCFEILQLTGSFTIAEE-GVRRRTGGLSVSLAGPDGRVVGGVVAGMLRA 251
+ G T +YEG FE+L L+GSFT + G R R+GG+SVSLA DGRV+GG VAG+L A
Sbjct: 217 QDTLGGTVTYEGRFELLSLSGSFTPTDSGGTRSRSGGMSVSLAATDGRVIGGGVAGLLVA 276
Query: 252 ASPIQVIVGSFLPN-NLKQHQRR 273
ASP+QV+VGSFLP+ L Q+ +
Sbjct: 277 ASPVQVVVGSFLPSYQLDQNATK 299
>Os02g0824300 HMG-I and HMG-Y, DNA-binding domain containing protein
Length = 394
Score = 161 bits (407), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 80/144 (55%), Positives = 107/144 (74%), Gaps = 1/144 (0%)
Query: 131 QILANLGEWYALSAGGSFTPHVIIVATGEDVAARIMSFSQKGPRSVCILAANGTISNVVL 190
Q LA+LG+W+ S G FTPHVII++ GEDVAARIMSFSQ+GPR+VCI++A G +S L
Sbjct: 193 QQLASLGKWFLGSVGTGFTPHVIIISPGEDVAARIMSFSQQGPRAVCIISATGAVSTATL 252
Query: 191 NQPGSSGSTFSYEGCFEILQLTGSFTIAEE-GVRRRTGGLSVSLAGPDGRVVGGVVAGML 249
+Q +SG +YEG FEIL L+GS+ + EE G R R+GGL ++L GPD RV+GG V G+L
Sbjct: 253 HQDSNSGGVVTYEGRFEILCLSGSYLVIEEGGSRTRSGGLCIALCGPDHRVIGGSVGGVL 312
Query: 250 RAASPIQVIVGSFLPNNLKQHQRR 273
AA +QVIVGSF+ K+++ +
Sbjct: 313 TAAGTVQVIVGSFMYGGTKKNKAK 336
>Os04g0589900 HMG-I and HMG-Y, DNA-binding domain containing protein
Length = 379
Score = 159 bits (403), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 78/135 (57%), Positives = 102/135 (75%), Gaps = 4/135 (2%)
Query: 143 SAGGSFTPHVIIVATGEDVAARIMSFSQKGPRSVCILAANGTISNVVLNQPGSSGSTFSY 202
S+G SFTPH+I V EDVA++IM+FSQ+GPR+ CI++ANG + L QP +SG +Y
Sbjct: 165 SSGTSFTPHIITVKPNEDVASKIMAFSQQGPRTTCIISANGALCTATLRQPATSGGIVTY 224
Query: 203 EGCFEILQLTGSFTIAEEG-VRRRTGGLSVSLAGPDGRVVGGVVAGMLRAASPIQVIVGS 261
EG F+IL L+GSF +AE+G R RTGGLSV+LAG DGR+VGG VAGML AA+P+QV+VGS
Sbjct: 225 EGHFDILSLSGSFLLAEDGDTRSRTGGLSVALAGSDGRIVGGCVAGMLMAATPVQVVVGS 284
Query: 262 FLPNNLK---QHQRR 273
F+ K +H +R
Sbjct: 285 FIAEGKKGKEEHLKR 299
>Os08g0118000 HMG-I and HMG-Y, DNA-binding domain containing protein
Length = 372
Score = 157 bits (398), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 86/141 (60%), Positives = 111/141 (78%), Gaps = 2/141 (1%)
Query: 135 NLGEWYALSAGGSFTPHVIIVATGEDVAARIMSFSQKGPRSVCILAANGTISNVVLNQPG 194
++GE A SAG +FTPH+I VA GEDV +++SFSQ+GPR++CIL+ANG ISNV L QP
Sbjct: 155 SIGEMVACSAGANFTPHIITVAPGEDVTMKVISFSQQGPRAICILSANGVISNVTLRQPD 214
Query: 195 SSGSTFSYEGCFEILQLTGSFTIAEE-GVRRRTGGLSVSLAGPDGRVVGGVVAGMLRAAS 253
SSG T +YEG FE+L L+GSF E G R R+GG+SVSLA PDGRVVGG VAG+L AAS
Sbjct: 215 SSGGTLTYEGRFELLSLSGSFMPTENSGTRSRSGGMSVSLASPDGRVVGGGVAGLLVAAS 274
Query: 254 PIQVIVGSFLPN-NLKQHQRR 273
P+Q++VGSFLP+ ++Q ++
Sbjct: 275 PVQIVVGSFLPSYQMEQKNKK 295
>Os09g0491708 HMG-I and HMG-Y, DNA-binding domain containing protein
Length = 359
Score = 150 bits (378), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 83/121 (68%), Positives = 97/121 (80%), Gaps = 1/121 (0%)
Query: 143 SAGGSFTPHVIIVATGEDVAARIMSFSQKGPRSVCILAANGTISNVVLNQPGSSGSTFSY 202
SAG FTPHVI V GEDV+A+IMSFSQ G R VC+L+ANG ISNV L Q +SG T +Y
Sbjct: 168 SAGAGFTPHVIFVKAGEDVSAKIMSFSQHGTRGVCVLSANGAISNVTLRQAATSGGTVTY 227
Query: 203 EGCFEILQLTGSFTIAEEGVRR-RTGGLSVSLAGPDGRVVGGVVAGMLRAASPIQVIVGS 261
EG FEIL L+GSF ++E G R RTGGLSVSLAGPDGRV+GG VAG+L AASP+Q++VGS
Sbjct: 228 EGRFEILSLSGSFLLSENGGHRSRTGGLSVSLAGPDGRVLGGGVAGLLTAASPVQIVVGS 287
Query: 262 F 262
F
Sbjct: 288 F 288
>Os08g0512400 HMG-I and HMG-Y, DNA-binding domain containing protein
Length = 292
Score = 135 bits (341), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 80/131 (61%), Positives = 102/131 (77%), Gaps = 1/131 (0%)
Query: 143 SAGGSFTPHVIIVATGEDVAARIMSFSQKGPRSVCILAANGTISNVVLNQPGSSGSTFSY 202
SAG FTPHVI V GEDV+A+IMSF+Q G R+VC+L+ANG ISNV L Q +SG T +Y
Sbjct: 99 SAGVGFTPHVITVLAGEDVSAKIMSFAQHGNRAVCVLSANGAISNVTLRQTATSGGTVTY 158
Query: 203 EGCFEILQLTGSFTIAEEGVRR-RTGGLSVSLAGPDGRVVGGVVAGMLRAASPIQVIVGS 261
EG FEIL L+GSF + + G +R RTGGLSVSLAGPDGR++GG VAG+L AA+P+Q++VGS
Sbjct: 159 EGRFEILSLSGSFLLTDHGGQRSRTGGLSVSLAGPDGRLLGGGVAGLLIAATPVQIVVGS 218
Query: 262 FLPNNLKQHQR 272
F K+ ++
Sbjct: 219 FNSEGKKEPKQ 229
>Os06g0326000 HMG-I and HMG-Y, DNA-binding domain containing protein
Length = 378
Score = 123 bits (309), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 73/129 (56%), Positives = 97/129 (75%), Gaps = 3/129 (2%)
Query: 148 FTPHVIIVATGEDVAARIMSFSQKGPRSVCILAANGTISNVVLNQPGSSG-STFSYEGCF 206
P VI V GEDV +R+MSF++ G +VC+L+ANG +SN+ L Q GSSG +T +YEG F
Sbjct: 200 LKPSVITVQVGEDVVSRVMSFTKNG-WAVCVLSANGAVSNMTLRQAGSSGATTVNYEGHF 258
Query: 207 EILQLTGSFTIAEE-GVRRRTGGLSVSLAGPDGRVVGGVVAGMLRAASPIQVIVGSFLPN 265
EIL L+GS+ ++E G+ R GGLSVSLAGPDGRV+GG VAG L AA+P+QV++GSFL +
Sbjct: 259 EILSLSGSYLLSESVGLSSRAGGLSVSLAGPDGRVLGGGVAGPLNAATPVQVVIGSFLAD 318
Query: 266 NLKQHQRRM 274
K H++ M
Sbjct: 319 VKKGHKQAM 327
>Os04g0683900 HMG-I and HMG-Y, DNA-binding domain containing protein
Length = 419
Score = 108 bits (271), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 58/150 (38%), Positives = 91/150 (60%), Gaps = 14/150 (9%)
Query: 137 GEWYALSAGGSFTPHVIIVATGEDVAARIMSFSQKGPRSVCILAANGTISNVVLNQPGS- 195
G ++ SAG SFTPH+I + EDVA +I++F+ R+VC+L+A G++S VVL P
Sbjct: 207 GNAFSGSAGTSFTPHIITASPSEDVAGKIVAFANHSSRAVCVLSATGSVSRVVLRHPADG 266
Query: 196 ------SGSTFS----YEGCFEILQLTGSFTIAEEGVRRRTGGLSVSLAGPDGRVVGGVV 245
+ S + YEG +EIL ++G + + EG ++ GLSV+L P+ ++GGV+
Sbjct: 267 AMSRVHASSHYKNPAIYEGLYEILSMSGCYNLMNEG---QSDGLSVTLCSPERHIIGGVL 323
Query: 246 AGMLRAASPIQVIVGSFLPNNLKQHQRRMG 275
G L AAS +QV++GSF+ K ++ G
Sbjct: 324 GGALVAASTVQVVLGSFVQGGSKPKSKKAG 353
>Os03g0105700 Protein of unknown function DUF296 domain containing protein
Length = 298
Score = 75.5 bits (184), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 66/117 (56%), Gaps = 7/117 (5%)
Query: 146 GSFTPHVIIVATGEDVAARIMSFSQKGPRSVCILAANGTISNVVLNQPGSSGSTFSYEGC 205
G PH++ + GE++ +I + S+ R +C+L+ G + L SSG T ++G
Sbjct: 100 GGLQPHLLQIDAGEEIIPKITALSKSNGRVICVLSVLGAVQEATLLL--SSGVTSYHKGP 157
Query: 206 FEILQLTGSFTIAEEGVRRRTGGLSVSLAGPDGRVVGGVVAGMLRAASPIQVIVGSF 262
EI++L GS + G L V+LA D V+GGV+ G L+AA+P+QV+V SF
Sbjct: 158 LEIIRLFGSILTPND-----QGCLRVTLASGDSSVIGGVITGPLKAATPVQVVVASF 209
>Os02g0820800 HMG-I and HMG-Y, DNA-binding domain containing protein
Length = 266
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/112 (46%), Positives = 68/112 (60%), Gaps = 2/112 (1%)
Query: 151 HVIIVATGEDVAARIMSFSQKGPRSVCILAANGTISNVVLNQPGSSGSTFSYEGCFEILQ 210
HV+ VA G DVA I FS++ R VC+L+ GT++NV L QP + G+ + G FEIL
Sbjct: 88 HVMEVAGGADVADAIAQFSRRRQRGVCVLSGAGTVANVALRQPSAPGAVVALHGRFEILS 147
Query: 211 LTGSFTIAEEGVRRRTGGLSVSLAGPDGRVVGGVVAGMLRAASPIQVIVGSF 262
LTG+F + GL+V LAG G+VVGG V G L AA P+ VI +F
Sbjct: 148 LTGTFLPGP--APPGSTGLTVYLAGGQGQVVGGSVVGSLIAAGPVMVIASTF 197
>Os02g0713700 Protein of unknown function DUF296 domain containing protein
Length = 336
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 66/115 (57%), Gaps = 5/115 (4%)
Query: 151 HVIIVATGEDVAARIMSFSQKGPRSVCILAANGTISNVVLNQPGSS--GSTF-SYEGCFE 207
HV+ VA G DV + ++++ R VC+L+ G + NV L QPG+S GS + G FE
Sbjct: 129 HVLEVAGGADVVDCVAEYARRRGRGVCVLSGGGAVVNVALRQPGASPPGSMVATLRGRFE 188
Query: 208 ILQLTGSFTIAEEGVRRRTGGLSVSLAGPDGRVVGGVVAGMLRAASPIQVIVGSF 262
IL LTG T+ GL+V L+G G+V+GG V G L AA P+ ++ SF
Sbjct: 189 ILSLTG--TVLPPPAPPGASGLTVFLSGGQGQVIGGSVVGPLVAAGPVVLMAASF 241
>Os09g0464300
Length = 334
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 60/113 (53%), Gaps = 10/113 (8%)
Query: 147 SFTPHVIIVATGEDVAARIMSFSQKGPRSVCILAANGTISNVVLNQP-----GSSGSTFS 201
+ PHVI + G DVA + FS + +C+LA G ++NV L P GS+ +
Sbjct: 110 AMRPHVIEIPGGRDVAEALARFSSRRNLGICVLAGTGAVANVSLRHPSPGVPGSAPAAIV 169
Query: 202 YEGCFEILQLTGSF-----TIAEEGVRRRTGGLSVSLAGPDGRVVGGVVAGML 249
+ G +EIL L+ +F + GLS+SLAGP G++VGG VAG L
Sbjct: 170 FHGRYEILSLSATFLPPAMSSVAPQAAVAAAGLSISLAGPHGQIVGGAVAGPL 222
>Os02g0448000 Protein of unknown function DUF296 domain containing protein
Length = 316
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 49/112 (43%), Positives = 68/112 (60%), Gaps = 2/112 (1%)
Query: 151 HVIIVATGEDVAARIMSFSQKGPRSVCILAANGTISNVVLNQPGSSGSTFSYEGCFEILQ 210
HV+ VA G D++ I +F+++ R VC+L+ GT++NV L QP S G+ + G FEIL
Sbjct: 127 HVMEVAGGCDISESITTFARRRQRGVCVLSGAGTVTNVTLRQPASQGAVVALHGRFEILS 186
Query: 211 LTGSFTIAEEGVRRRTGGLSVSLAGPDGRVVGGVVAGMLRAASPIQVIVGSF 262
L+GSF GL+V LAG G+VVGG V G L AA P+ ++ SF
Sbjct: 187 LSGSFLPPP--APPEATGLTVYLAGGQGQVVGGSVVGALTAAGPVVIMAASF 236
>Os08g0563200 Protein of unknown function DUF296 domain containing protein
Length = 235
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/114 (44%), Positives = 69/114 (60%), Gaps = 6/114 (5%)
Query: 151 HVIIVATGEDVAARIMSFSQKGPRSVCILAANGTISNVVLNQPGSSGSTFSYEGCFEILQ 210
HV+ VA G DVA I F+++ R VC+L+ GT+++V L QP + + + G FEIL
Sbjct: 65 HVMEVAGGADVAESIAHFARRRQRGVCVLSGAGTVTDVALRQPAAPSAVVALRGRFEILS 124
Query: 211 LTGSFT--IAEEGVRRRTGGLSVSLAGPDGRVVGGVVAGMLRAASPIQVIVGSF 262
LTG+F A G + GL+V LAG G+VVGG V G L AA P+ VI +F
Sbjct: 125 LTGTFLPGPAPPG----STGLTVYLAGGQGQVVGGSVVGTLTAAGPVMVIASTF 174
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.131 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,765,283
Number of extensions: 344194
Number of successful extensions: 1162
Number of sequences better than 1.0e-10: 24
Number of HSP's gapped: 1132
Number of HSP's successfully gapped: 24
Length of query: 387
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 284
Effective length of database: 11,657,759
Effective search space: 3310803556
Effective search space used: 3310803556
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 157 (65.1 bits)