BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0116200 Os11g0116200|AK060108
(132 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0116200 Similar to Nonspecific lipid-transfer protein ... 211 1e-55
AK061740 175 8e-45
Os11g0116000 Similar to Nonspecific lipid-transfer protein ... 164 2e-41
AK070192 164 2e-41
Os12g0115300 Plant lipid transfer protein/Par allergen fami... 164 2e-41
Os12g0115500 Plant lipid transfer protein/Par allergen fami... 141 1e-34
AK059819 103 2e-23
Os12g0115000 Similar to Lipid transfer protein LPT II 103 3e-23
Os12g0114500 Similar to Nonspecific lipid-transfer protein ... 97 4e-21
AK102455 97 4e-21
Os11g0427800 Similar to Lipid transfer protein LPT III 96 5e-21
Os12g0115100 Nonspecific lipid-transfer protein 1 precursor... 96 7e-21
AK059808 96 7e-21
Os11g0114900 Similar to Nonspecific lipid-transfer protein ... 95 1e-20
Os11g0115400 Lipid transfer protein LPT IV 95 2e-20
Os12g0114800 Similar to Lipid transfer protein 92 8e-20
Os11g0115100 Similar to Lipid transfer protein 92 8e-20
Os08g0131200 Plant lipid transfer protein/Par allergen fami... 79 9e-16
Os05g0477900 Similar to Nonspecific lipid-transfer protein ... 73 5e-14
Os01g0219500 Plant lipid transfer protein/Par allergen fami... 70 6e-13
AK058805 68 2e-12
Os06g0539500 66 6e-12
Os02g0445300 66 6e-12
>Os11g0116200 Similar to Nonspecific lipid-transfer protein 1 (LTP 1) (Major
allergen Pru d 3)
Length = 132
Score = 211 bits (537), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 105/105 (100%), Positives = 105/105 (100%)
Query: 28 ITCGQVGSAIAPCISYVTGRSGLTQGCCNGVKGLNNAARTTADRQAACRCLKSLAGSIKS 87
ITCGQVGSAIAPCISYVTGRSGLTQGCCNGVKGLNNAARTTADRQAACRCLKSLAGSIKS
Sbjct: 28 ITCGQVGSAIAPCISYVTGRSGLTQGCCNGVKGLNNAARTTADRQAACRCLKSLAGSIKS 87
Query: 88 LNLGTVAGVPGKCGVNVGFPISLSTDCNNQPCGGWVTSWRRLRWC 132
LNLGTVAGVPGKCGVNVGFPISLSTDCNNQPCGGWVTSWRRLRWC
Sbjct: 88 LNLGTVAGVPGKCGVNVGFPISLSTDCNNQPCGGWVTSWRRLRWC 132
>AK061740
Length = 118
Score = 175 bits (444), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 88/88 (100%), Positives = 88/88 (100%)
Query: 28 ITCGQVGSAIAPCISYVTGRSGLTQGCCNGVKGLNNAARTTADRQAACRCLKSLAGSIKS 87
ITCGQVGSAIAPCISYVTGRSGLTQGCCNGVKGLNNAARTTADRQAACRCLKSLAGSIKS
Sbjct: 28 ITCGQVGSAIAPCISYVTGRSGLTQGCCNGVKGLNNAARTTADRQAACRCLKSLAGSIKS 87
Query: 88 LNLGTVAGVPGKCGVNVGFPISLSTDCN 115
LNLGTVAGVPGKCGVNVGFPISLSTDCN
Sbjct: 88 LNLGTVAGVPGKCGVNVGFPISLSTDCN 115
>Os11g0116000 Similar to Nonspecific lipid-transfer protein 1 (LTP 1) (Major
allergen Pru d 3)
Length = 118
Score = 164 bits (414), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 81/88 (92%), Positives = 85/88 (96%)
Query: 28 ITCGQVGSAIAPCISYVTGRSGLTQGCCNGVKGLNNAARTTADRQAACRCLKSLAGSIKS 87
ITCGQVGSAIAPCISYVTGR GLTQGCCNGVKGLNNAARTTADRQAACRCLK+LAG+IKS
Sbjct: 28 ITCGQVGSAIAPCISYVTGRGGLTQGCCNGVKGLNNAARTTADRQAACRCLKTLAGTIKS 87
Query: 88 LNLGTVAGVPGKCGVNVGFPISLSTDCN 115
LNLG AG+PGKCGVNVGFPISLSTDC+
Sbjct: 88 LNLGAAAGIPGKCGVNVGFPISLSTDCS 115
>AK070192
Length = 118
Score = 164 bits (414), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 81/88 (92%), Positives = 85/88 (96%)
Query: 28 ITCGQVGSAIAPCISYVTGRSGLTQGCCNGVKGLNNAARTTADRQAACRCLKSLAGSIKS 87
ITCGQVGSAIAPCISYVTGR GLTQGCCNGVKGLNNAARTTADRQAACRCLK+LAG+IKS
Sbjct: 28 ITCGQVGSAIAPCISYVTGRGGLTQGCCNGVKGLNNAARTTADRQAACRCLKTLAGTIKS 87
Query: 88 LNLGTVAGVPGKCGVNVGFPISLSTDCN 115
LNLG AG+PGKCGVNVGFPISLSTDC+
Sbjct: 88 LNLGAAAGIPGKCGVNVGFPISLSTDCS 115
>Os12g0115300 Plant lipid transfer protein/Par allergen family protein
Length = 118
Score = 164 bits (414), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 81/89 (91%), Positives = 85/89 (95%)
Query: 28 ITCGQVGSAIAPCISYVTGRSGLTQGCCNGVKGLNNAARTTADRQAACRCLKSLAGSIKS 87
ITCGQVGSAIAPCISYVTGR GLTQGCCNGVKGLNNAARTTADRQAACRCLK+LAG+IKS
Sbjct: 28 ITCGQVGSAIAPCISYVTGRGGLTQGCCNGVKGLNNAARTTADRQAACRCLKTLAGTIKS 87
Query: 88 LNLGTVAGVPGKCGVNVGFPISLSTDCNN 116
LNLG AG+PGKCGVNVGFPISLSTDC+
Sbjct: 88 LNLGAAAGIPGKCGVNVGFPISLSTDCSK 116
>Os12g0115500 Plant lipid transfer protein/Par allergen family protein
Length = 93
Score = 141 bits (355), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 72/79 (91%), Positives = 73/79 (92%)
Query: 37 IAPCISYVTGRSGLTQGCCNGVKGLNNAARTTADRQAACRCLKSLAGSIKSLNLGTVAGV 96
I I + GRSGLTQGCCNGVKGLNNAARTTADRQAACRCLKSLAGSIKSLNLGTVAGV
Sbjct: 12 IKSVILNMAGRSGLTQGCCNGVKGLNNAARTTADRQAACRCLKSLAGSIKSLNLGTVAGV 71
Query: 97 PGKCGVNVGFPISLSTDCN 115
PGKCGVNVGFPISLSTDCN
Sbjct: 72 PGKCGVNVGFPISLSTDCN 90
>AK059819
Length = 117
Score = 103 bits (258), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 50/89 (56%), Positives = 67/89 (75%)
Query: 28 ITCGQVGSAIAPCISYVTGRSGLTQGCCNGVKGLNNAARTTADRQAACRCLKSLAGSIKS 87
I+CGQV SA++PC+SY G SG + CC+GV+ LN+AA TTADR+ AC CLK++AGSI
Sbjct: 27 ISCGQVNSAVSPCLSYARGGSGPSAACCSGVRSLNSAATTTADRRTACNCLKNVAGSISG 86
Query: 88 LNLGTVAGVPGKCGVNVGFPISLSTDCNN 116
LN G A +P KCGV++ + IS S DC++
Sbjct: 87 LNAGNAASIPSKCGVSIPYTISPSIDCSS 115
>Os12g0115000 Similar to Lipid transfer protein LPT II
Length = 110
Score = 103 bits (257), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 50/89 (56%), Positives = 67/89 (75%)
Query: 28 ITCGQVGSAIAPCISYVTGRSGLTQGCCNGVKGLNNAARTTADRQAACRCLKSLAGSIKS 87
I+CGQV SA++PC+SY G SG + CC+GV+ LN+AA TTADR+ AC CLK++AGSI
Sbjct: 20 ISCGQVNSAVSPCLSYARGGSGPSAACCSGVRSLNSAATTTADRRTACNCLKNVAGSISG 79
Query: 88 LNLGTVAGVPGKCGVNVGFPISLSTDCNN 116
LN G A +P KCGV++ + IS S DC++
Sbjct: 80 LNAGNAASIPSKCGVSIPYTISPSIDCSS 108
>Os12g0114500 Similar to Nonspecific lipid-transfer protein (LTP) (Fragment)
Length = 119
Score = 96.7 bits (239), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 51/88 (57%), Positives = 61/88 (69%), Gaps = 1/88 (1%)
Query: 29 TCGQVGSAIAPCISYVTGR-SGLTQGCCNGVKGLNNAARTTADRQAACRCLKSLAGSIKS 87
TCGQV S +APCI Y TGR S T GCC+GV+ LN+AA TTADRQ C CLK ++
Sbjct: 29 TCGQVVSMLAPCIMYATGRVSAPTGGCCDGVRTLNSAAATTADRQTTCACLKQQTSAMGG 88
Query: 88 LNLGTVAGVPGKCGVNVGFPISLSTDCN 115
L VAG+P KCGVN+ + IS STDC+
Sbjct: 89 LRPDLVAGIPSKCGVNIPYAISPSTDCS 116
>AK102455
Length = 119
Score = 96.7 bits (239), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 51/88 (57%), Positives = 61/88 (69%), Gaps = 1/88 (1%)
Query: 29 TCGQVGSAIAPCISYVTGR-SGLTQGCCNGVKGLNNAARTTADRQAACRCLKSLAGSIKS 87
TCGQV S +APCI Y TGR S T GCC+GV+ LN+AA TTADRQ C CLK ++
Sbjct: 29 TCGQVVSMLAPCIMYATGRVSAPTGGCCDGVRTLNSAAATTADRQTTCACLKQQTSAMGG 88
Query: 88 LNLGTVAGVPGKCGVNVGFPISLSTDCN 115
L VAG+P KCGVN+ + IS STDC+
Sbjct: 89 LRPDLVAGIPSKCGVNIPYAISPSTDCS 116
>Os11g0427800 Similar to Lipid transfer protein LPT III
Length = 117
Score = 96.3 bits (238), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 50/89 (56%), Positives = 63/89 (70%), Gaps = 1/89 (1%)
Query: 28 ITCGQVGSAIAPCISYVTGR-SGLTQGCCNGVKGLNNAARTTADRQAACRCLKSLAGSIK 86
ITCGQV SA+ PC++Y G +G + CCNGV+ L +AARTTADR+ AC CLK+ A IK
Sbjct: 26 ITCGQVNSAVGPCLTYARGGGAGPSAACCNGVRSLKSAARTTADRRTACNCLKNAARGIK 85
Query: 87 SLNLGTVAGVPGKCGVNVGFPISLSTDCN 115
LN G A +P KCGV+V + IS S DC+
Sbjct: 86 GLNAGNAASIPSKCGVSVPYTISASIDCS 114
>Os12g0115100 Nonspecific lipid-transfer protein 1 precursor (LTP 1) (PAPI)
Length = 116
Score = 95.9 bits (237), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 48/88 (54%), Positives = 61/88 (69%)
Query: 28 ITCGQVGSAIAPCISYVTGRSGLTQGCCNGVKGLNNAARTTADRQAACRCLKSLAGSIKS 87
ITCGQV SA+ PC++Y G +G + CC+GV+ L AA TTADR+ AC CLK+ A IK
Sbjct: 26 ITCGQVNSAVGPCLTYARGGAGPSAACCSGVRSLKAAASTTADRRTACNCLKNAARGIKG 85
Query: 88 LNLGTVAGVPGKCGVNVGFPISLSTDCN 115
LN G A +P KCGV+V + IS S DC+
Sbjct: 86 LNAGNAASIPSKCGVSVPYTISASIDCS 113
>AK059808
Length = 116
Score = 95.9 bits (237), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 48/88 (54%), Positives = 61/88 (69%)
Query: 28 ITCGQVGSAIAPCISYVTGRSGLTQGCCNGVKGLNNAARTTADRQAACRCLKSLAGSIKS 87
ITCGQV SA+ PC++Y G +G + CC+GV+ L AA TTADR+ AC CLK+ A IK
Sbjct: 26 ITCGQVNSAVGPCLTYARGGAGPSAACCSGVRSLKAAASTTADRRTACNCLKNAARGIKG 85
Query: 88 LNLGTVAGVPGKCGVNVGFPISLSTDCN 115
LN G A +P KCGV+V + IS S DC+
Sbjct: 86 LNAGNAASIPSKCGVSVPYTISASIDCS 113
>Os11g0114900 Similar to Nonspecific lipid-transfer protein (LTP) (Fragment)
Length = 119
Score = 94.7 bits (234), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 50/88 (56%), Positives = 60/88 (68%), Gaps = 1/88 (1%)
Query: 29 TCGQVGSAIAPCISYVTGR-SGLTQGCCNGVKGLNNAARTTADRQAACRCLKSLAGSIKS 87
TCGQV S +APCI Y TGR S T GCC+GV+ LN+AA TTADRQ C CLK ++
Sbjct: 29 TCGQVVSMLAPCIMYATGRVSAPTGGCCDGVRTLNSAAATTADRQTTCACLKQQTSAMGG 88
Query: 88 LNLGTVAGVPGKCGVNVGFPISLSTDCN 115
L VAG+P KC VN+ + IS STDC+
Sbjct: 89 LRPDLVAGIPSKCDVNIPYAISPSTDCS 116
>Os11g0115400 Lipid transfer protein LPT IV
Length = 116
Score = 94.7 bits (234), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 47/88 (53%), Positives = 61/88 (69%)
Query: 28 ITCGQVGSAIAPCISYVTGRSGLTQGCCNGVKGLNNAARTTADRQAACRCLKSLAGSIKS 87
ITCGQV SA+ PC++Y G +G + CC+GV+ L AA +TADR+ AC CLK+ A IK
Sbjct: 26 ITCGQVNSAVGPCLTYARGGAGPSAACCSGVRSLKAAASSTADRRTACNCLKNAARGIKG 85
Query: 88 LNLGTVAGVPGKCGVNVGFPISLSTDCN 115
LN G A +P KCGV+V + IS S DC+
Sbjct: 86 LNAGNAASIPSKCGVSVPYTISASIDCS 113
>Os12g0114800 Similar to Lipid transfer protein
Length = 121
Score = 92.4 bits (228), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 46/88 (52%), Positives = 61/88 (69%), Gaps = 1/88 (1%)
Query: 29 TCGQVGSAIAPCISYVTGRSGLTQGCCN-GVKGLNNAARTTADRQAACRCLKSLAGSIKS 87
+CG V S+IAPC+SYV GR C GV+ LN A ++ADR+ AC CLK++A S ++
Sbjct: 31 SCGDVTSSIAPCLSYVMGRESSPSSSCCSGVRTLNGKASSSADRRTACSCLKNMASSFRN 90
Query: 88 LNLGTVAGVPGKCGVNVGFPISLSTDCN 115
LN+G A +P KCGV+V FPIS S DC+
Sbjct: 91 LNMGNAASIPSKCGVSVAFPISTSVDCS 118
>Os11g0115100 Similar to Lipid transfer protein
Length = 121
Score = 92.4 bits (228), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 46/88 (52%), Positives = 61/88 (69%), Gaps = 1/88 (1%)
Query: 29 TCGQVGSAIAPCISYVTGRSGLTQGCCN-GVKGLNNAARTTADRQAACRCLKSLAGSIKS 87
+CG V S+IAPC+SYV GR C GV+ LN A ++ADR+ AC CLK++A S ++
Sbjct: 31 SCGDVTSSIAPCLSYVMGRESSPSSSCCSGVRTLNGKASSSADRRTACSCLKNMASSFRN 90
Query: 88 LNLGTVAGVPGKCGVNVGFPISLSTDCN 115
LN+G A +P KCGV+V FPIS S DC+
Sbjct: 91 LNMGNAASIPSKCGVSVAFPISTSVDCS 118
>Os08g0131200 Plant lipid transfer protein/Par allergen family protein
Length = 120
Score = 79.0 bits (193), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Query: 28 ITCGQVGSAIAPCISYVTGRSGLTQG-CCNGVKGLNNAARTTADRQAACRCLKSLAGSIK 86
+TCG V +++ PC++Y+TG++ G CC GV+ L TA+R+ AC C+K A K
Sbjct: 29 VTCGDVDASLLPCVAYLTGKAAAPSGDCCAGVRHLRTLPVGTAERRFACDCVKKAAARFK 88
Query: 87 SLNLGTVAGVPGKCGVNVGFPISLSTDCNNQP 118
LN + +P KC + FP+SL DCN P
Sbjct: 89 GLNGDAIRDLPAKCAAPLPFPLSLDFDCNTIP 120
>Os05g0477900 Similar to Nonspecific lipid-transfer protein 1 (LTP 1) (Major
allergen Pru d 3)
Length = 129
Score = 73.2 bits (178), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 57/89 (64%), Gaps = 1/89 (1%)
Query: 28 ITCGQVGSAIAPCISYVTGRSGLTQGCCNGVKGLNNAARTTADRQAACRCLKSL-AGSIK 86
++C V + + PC+ YV + CC G++ + AARTTADR+AAC CLK++ AG+
Sbjct: 38 LSCSTVYNTLLPCLPYVQSGGAVPAACCGGIRSVVAAARTTADRRAACTCLKNVAAGAAG 97
Query: 87 SLNLGTVAGVPGKCGVNVGFPISLSTDCN 115
+ AG+PG+CGV+V F IS + +CN
Sbjct: 98 GPYISRAAGLPGRCGVSVPFKISPNVNCN 126
>Os01g0219500 Plant lipid transfer protein/Par allergen family protein
Length = 127
Score = 69.7 bits (169), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 50/91 (54%), Gaps = 2/91 (2%)
Query: 28 ITCGQVGSAIAPCISYVTGRSGLTQG--CCNGVKGLNNAARTTADRQAACRCLKSLAGSI 85
+ CGQV +APC+ Y+ G G+T CC+ + LN A ADR A C C+K A
Sbjct: 30 VQCGQVMQLMAPCMPYLAGAPGMTPYGICCDSLGVLNRMAPAPADRVAVCNCVKDAAAGF 89
Query: 86 KSLNLGTVAGVPGKCGVNVGFPISLSTDCNN 116
+++ + +P CG+++ F I+ + DCN
Sbjct: 90 PAVDFSRASALPAACGLSISFTIAPNMDCNQ 120
>AK058805
Length = 75
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 48/80 (60%), Gaps = 10/80 (12%)
Query: 36 AIAPCISYVTGRSGLTQGCCNGVKGLNNAARTTADRQAACRCLKSLAGSIKSLNLGTVAG 95
A+ PC++Y G GV+ L AA +TADR+ AC CLK+ A IK LN G A
Sbjct: 3 ALGPCLTYARG----------GVRSLKAAASSTADRRTACNCLKNAARGIKGLNAGNAAS 52
Query: 96 VPGKCGVNVGFPISLSTDCN 115
+P KCGV+V + IS S DC+
Sbjct: 53 IPSKCGVSVPYTISASIDCS 72
>Os06g0539500
Length = 136
Score = 66.2 bits (160), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 2/91 (2%)
Query: 28 ITCGQVGSAIAPCISYVTGRSGLTQG-CCNGVKGLNNAARTTADRQAACRCLKS-LAGSI 85
++C V + + PC+ ++ G G CC+G+ GL AA TT DRQAAC CLKS ++G
Sbjct: 46 VSCSDVVADVTPCLGFLQGDDDHPSGECCDGLSGLVAAAATTEDRQAACECLKSAVSGQF 105
Query: 86 KSLNLGTVAGVPGKCGVNVGFPISLSTDCNN 116
++ +P CG+++ + S DC+
Sbjct: 106 TAVEAAPARDLPADCGLSLPYTFSPDVDCSQ 136
>Os02g0445300
Length = 75
Score = 66.2 bits (160), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 4/74 (5%)
Query: 43 YVTGR-SGLTQGCCNGVKGLNNAARTTADRQAACRCLKSLAGSIKSLNLGTVAGVPGKCG 101
Y TGR S T GCC+GV+ LN+AA AD Q C C+K + L VAG+P KCG
Sbjct: 2 YATGRVSAPTGGCCDGVRTLNSAA---ADHQTTCACIKQQTSGMGGLRPDLVAGIPSKCG 58
Query: 102 VNVGFPISLSTDCN 115
VN+ + IS STDC+
Sbjct: 59 VNIPYAISPSTDCS 72
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.135 0.463
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,710,480
Number of extensions: 121223
Number of successful extensions: 358
Number of sequences better than 1.0e-10: 24
Number of HSP's gapped: 348
Number of HSP's successfully gapped: 24
Length of query: 132
Length of database: 17,035,801
Length adjustment: 90
Effective length of query: 42
Effective length of database: 12,336,541
Effective search space: 518134722
Effective search space used: 518134722
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 150 (62.4 bits)