BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0461300 Os08g0461300|AK065651
(432 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0461300 Cyclin-like F-box domain containing protein 774 0.0
Os08g0460900 Cyclin-like F-box domain containing protein 597 e-171
Os08g0461100 Leucine-rich repeat 2 containing protein 388 e-108
Os08g0460800 Cyclin-like F-box domain containing protein 351 6e-97
Os08g0460700 Leucine-rich repeat 2 containing protein 278 4e-75
Os09g0443000 Cyclin-like F-box domain containing protein 199 5e-51
Os08g0462300 Cyclin-like F-box domain containing protein 171 1e-42
Os08g0461800 Conserved hypothetical protein 137 1e-32
Os08g0462200 124 2e-28
Os08g0461700 Conserved hypothetical protein 120 2e-27
Os08g0267000 Cyclin-like F-box domain containing protein 110 2e-24
Os08g0461400 Conserved hypothetical protein 110 2e-24
Os08g0461000 Cyclin-like F-box domain containing protein 105 6e-23
Os08g0268200 91 2e-18
Os09g0443100 90 4e-18
Os08g0267800 Cyclin-like F-box domain containing protein 89 5e-18
>Os08g0461300 Cyclin-like F-box domain containing protein
Length = 432
Score = 774 bits (1999), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/432 (88%), Positives = 384/432 (88%)
Query: 1 MADVQSXXXXXXXSGQRRLVGPAPDALGSLPLDVLDSILSRLHIHDVVRTSALXXXXXXX 60
MADVQS SGQRRLVGPAPDALGSLPLDVLDSILSRLHIHDVVRTSAL
Sbjct: 1 MADVQSPPPPPPPSGQRRLVGPAPDALGSLPLDVLDSILSRLHIHDVVRTSALSRSWRRR 60
Query: 61 XESLPTVDLTRSPGISASDVDALLLRRTAPARSFRLATRDRSWSPTAFHDWXXXXXXXXX 120
ESLPTVDLTRSPGISASDVDALLLRRTAPARSFRLATRDRSWSPTAFHDW
Sbjct: 61 WESLPTVDLTRSPGISASDVDALLLRRTAPARSFRLATRDRSWSPTAFHDWLLRLSRGGG 120
Query: 121 XXXXXXXXXXXXYTYINSKLNSCLFSFRELTSLRLHCCGLPHVPTEFAGFPNLKTMYLSV 180
YTYINSKLNSCLFSFRELTSLRLHCCGLPHVPTEFAGFPNLKTMYLSV
Sbjct: 121 GGGLRDLELTLRYTYINSKLNSCLFSFRELTSLRLHCCGLPHVPTEFAGFPNLKTMYLSV 180
Query: 181 VKVQRHGGRGLATLIAASPVLQEVTLIDVVLIGDGPDEDWVIRASNLRKLTIALGSEYGG 240
VKVQRHGGRGLATLIAASPVLQEVTLIDVVLIGDGPDEDWVIRASNLRKLTIALGSEYGG
Sbjct: 181 VKVQRHGGRGLATLIAASPVLQEVTLIDVVLIGDGPDEDWVIRASNLRKLTIALGSEYGG 240
Query: 241 RMEDLPRLEECCLFGLNYAKYLTGMARVTKLTFYCNCMLSTEVDVLERLPFLFENLRSLI 300
RMEDLPRLEECCLFGLNYAKYLTGMARVTKLTFYCNCMLSTEVDVLERLPFLFENLRSLI
Sbjct: 241 RMEDLPRLEECCLFGLNYAKYLTGMARVTKLTFYCNCMLSTEVDVLERLPFLFENLRSLI 300
Query: 301 LGVNFCMMSHILAIFCLLRSAPVLEELDVWNWSEGAQEMEANDVFLNAQWINHMFAKLHV 360
LGVNFCMMSHILAIFCLLRSAPVLEELDVWNWSEGAQEMEANDVFLNAQWINHMFAKLHV
Sbjct: 301 LGVNFCMMSHILAIFCLLRSAPVLEELDVWNWSEGAQEMEANDVFLNAQWINHMFAKLHV 360
Query: 361 VRMKKVYCLNNEMHFIEFILSKARVLRVXXXXXXXXXXXXIEEAIIDITEYPRASPDAQV 420
VRMKKVYCLNNEMHFIEFILSKARVLRV IEEAIIDITEYPRASPDAQV
Sbjct: 361 VRMKKVYCLNNEMHFIEFILSKARVLRVLSLTLASDSLSSIEEAIIDITEYPRASPDAQV 420
Query: 421 IFMGVEPESANK 432
IFMGVEPESANK
Sbjct: 421 IFMGVEPESANK 432
>Os08g0460900 Cyclin-like F-box domain containing protein
Length = 584
Score = 597 bits (1540), Expect = e-171, Method: Compositional matrix adjust.
Identities = 299/407 (73%), Positives = 326/407 (80%), Gaps = 3/407 (0%)
Query: 25 DALGSLPLDVLDSILSRLHIHDVVRTSALXXXXXXXXESLPTVDLTRSPGISASDVDALL 84
DALGSLPLDVLD+ILSRLHIHDVVRTSAL ESLPTV L SPGI ASDVDALL
Sbjct: 2 DALGSLPLDVLDNILSRLHIHDVVRTSALSRAWRRRWESLPTVGLLNSPGIGASDVDALL 61
Query: 85 LRRTAPARSFRLATRDRSWSPTAFHDWXXXXXXXXXXXXXXXXXXXXXYTYINSKLNSCL 144
LRRTAP RSFRLATRDRSWSPTAFHDW Y ++ KLNSCL
Sbjct: 62 LRRTAPVRSFRLATRDRSWSPTAFHDWLLHLHLRGGLRDLELTLR---YEFMYQKLNSCL 118
Query: 145 FSFRELTSLRLHCCGLPHVPTEFAGFPNLKTMYLSVVKVQRHGGRGLATLIAASPVLQEV 204
FSFRELTSL+L+CCGLP++P EFAGFPNLKT++ S+V+ Q GGRG+ATLIAASPVLQE
Sbjct: 119 FSFRELTSLKLYCCGLPNLPAEFAGFPNLKTLHFSMVQAQSPGGRGIATLIAASPVLQEA 178
Query: 205 TLIDVVLIGDGPDEDWVIRASNLRKLTIALGSEYGGRMEDLPRLEECCLFGLNYAKYLTG 264
+LID LIGDGPDEDWVIR SNLRKLTIALG +YGGR+ED+ RLEECCLFG NYAKYL
Sbjct: 179 SLIDGKLIGDGPDEDWVIRGSNLRKLTIALGHKYGGRIEDIARLEECCLFGPNYAKYLMR 238
Query: 265 MARVTKLTFYCNCMLSTEVDVLERLPFLFENLRSLILGVNFCMMSHILAIFCLLRSAPVL 324
MA VTKL+FYCN +LSTEVDVLERLPFLFENLRSL+LGVNFC++SHILA FCLLRSAPVL
Sbjct: 239 MAHVTKLSFYCNSILSTEVDVLERLPFLFENLRSLVLGVNFCILSHILATFCLLRSAPVL 298
Query: 325 EELDVWNWSEGAQEMEANDVFLNAQWINHMFAKLHVVRMKKVYCLNNEMHFIEFILSKAR 384
EELDVW +S+G QEM+ +D F +AQW+NHMFAKLHVVRMKKV CL NEM IEFILSKAR
Sbjct: 299 EELDVWVFSDGTQEMKTDDEFFDAQWVNHMFAKLHVVRMKKVSCLCNEMLLIEFILSKAR 358
Query: 385 VLRVXXXXXXXXXXXXIEEAIIDITEYPRASPDAQVIFMGVEPESAN 431
LRV IEEAI DITEYPRASP AQVIF G EPE AN
Sbjct: 359 ALRVLSLTLASNSQFSIEEAITDITEYPRASPYAQVIFAGREPECAN 405
>Os08g0461100 Leucine-rich repeat 2 containing protein
Length = 671
Score = 388 bits (996), Expect = e-108, Method: Compositional matrix adjust.
Identities = 217/385 (56%), Positives = 252/385 (65%), Gaps = 29/385 (7%)
Query: 67 VDLTRSPGISASDVDALLLRRTA--PARSFRLATRDRSWSPTAFHDWXXXXXXXXXXXXX 124
+DLTRSPG++ASDVDA+LLRR+A P R+FRL RD SW A HDW
Sbjct: 138 LDLTRSPGVAASDVDAVLLRRSAAAPVRAFRLVARDPSWFVDALHDWLLHLSRNGVQALE 197
Query: 125 XXXXXXXXYTYINSKLNSCLFSFRELTSLRLHCCGLPHVPTEFAGFPNLKTMYLSVVKVQ 184
+ N +L+SCLFS REL L L C LP F GFPNLK + L V +
Sbjct: 198 LW------FPTYNFQLHSCLFSCRELACLDLDSCRLPPARMGFEGFPNLKKLRLHEVTLP 251
Query: 185 RHGGRGLATLIAASPVLQEVTLIDVVLIGDGPDEDWVIRASNLRKLTIALGSEYGGRMED 244
H G LA LI+ASP+L+EV L+ V L+GD PDE+WVIRA NLRKL + YGGR+E+
Sbjct: 252 EHMGNMLAALISASPLLEEVELVSVFLVGDYPDEEWVIRAPNLRKLIMVAAFPYGGRVEE 311
Query: 245 LPRLEECCLFGLNYAKYLTGMARVTKLTFYCNCMLSTEVDVLERLPFLFENLRSLILGVN 304
LPRLE+ L G NYAK+LTGMA VTKL F C+ MLSTEVDVLE+LPFLFENLRSL++ VN
Sbjct: 312 LPRLEQGILCGPNYAKFLTGMAHVTKLEFMCHYMLSTEVDVLEQLPFLFENLRSLVISVN 371
Query: 305 FCMMSHILAIFCLLRSAPVLEELDV-----------------WNWSEGAQEMEANDVFLN 347
FC MSHIL +FCLLRSAPVLEELDV S AQ+++AND FLN
Sbjct: 372 FCKMSHILFMFCLLRSAPVLEELDVVVMLNDHLQIHYAITCFKGQSNDAQDIDANDEFLN 431
Query: 348 AQWINHMFAKLHVVRMKKVYCLNNEMHFIEFILSKARVLRVXXXXXXXXXXXXIEEAIID 407
AQ MFAKL VVRMKKV CL NEMHF+EF+L+KARVLRV E+A
Sbjct: 432 AQPTYDMFAKLRVVRMKKVACLCNEMHFMEFVLNKARVLRVLSVYPSSGVTCSNEQAF-- 489
Query: 408 ITEYPRASPDAQVIFMGVEPESANK 432
ITE+PR SPDAQVIFM ESAN
Sbjct: 490 ITEHPRVSPDAQVIFMNR--ESANN 512
>Os08g0460800 Cyclin-like F-box domain containing protein
Length = 372
Score = 351 bits (900), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 205/409 (50%), Positives = 244/409 (59%), Gaps = 62/409 (15%)
Query: 24 PDALGSLPLDVLDSILSRLHIHDVVRTSALXXXXXXXXESLPTVDLTRSPGISASDVDAL 83
PDALG+LP++VLD+IL RLHI+DVVRTSAL ESLPTVDLTRSPG++ASDVDA+
Sbjct: 26 PDALGALPVEVLDNILGRLHIYDVVRTSALSRAWRRRWESLPTVDLTRSPGVAASDVDAV 85
Query: 84 LLRRTAPARSFRLATRDRSWSPTAFHDWXXXXXXXXXXXXXXXXXXXXXYTYINSKLNSC 143
LLRR+AP R+FRLA RD SW A HDW + + +L+SC
Sbjct: 86 LLRRSAPVRAFRLAARDPSWFVDALHDW------LLYLSRSGVQALYLWFPTPSFRLHSC 139
Query: 144 LFSFRELTSLRLHCCGLPHVPTEFAGFPNLKTMYLSVVKVQRHGGRGLATLIAASPVLQE 203
LFS RELTSL L C LP P+ F GF NLK ++L+ V + HG + LA L A SP+L++
Sbjct: 140 LFSCRELTSLDLEGCRLPPAPSGFEGFQNLKKLHLTKVSLPEHGDKALAALFAGSPLLED 199
Query: 204 VTLIDVVLIGDGPDEDWVIRASNLRKLTIALGSEYGGRMEDLPRLEECCLFGLNYAKYLT 263
V L++ +L+GDG DE WVIRA NLRKL + Y GR+EDLPRLEE L G NYAK+LT
Sbjct: 200 VELMNALLVGDGADE-WVIRAPNLRKLIMVAPFPYAGRVEDLPRLEEGILCGPNYAKFLT 258
Query: 264 GMARVTKLTFYCNCMLSTEVDVLERLPFLFENLRSLILGVNFCMMSHILAIFCLLRSAPV 323
GMA VTKL F C+ M D
Sbjct: 259 GMAHVTKLEFVCSFMRGQGDD--------------------------------------- 279
Query: 324 LEELDVWNWSEGAQEMEANDVFLNAQWINHMFAKLHVVRMKKVYCLNNEMHFIEFILSKA 383
AQ+++AND FLNAQ N MFAKLHVVRMKKV CL NEMHF+EF+L+KA
Sbjct: 280 ------------AQDIDANDEFLNAQSTNDMFAKLHVVRMKKVACLCNEMHFMEFVLNKA 327
Query: 384 RVLRVXXXXXXXXXXXXIEEAIIDITEYPRASPDAQVIFMGVEPESANK 432
VLRV E+ I ITE+PR SPDAQVIFM ESANK
Sbjct: 328 GVLRVLSVYPSSGSTCSNEQTI--ITEHPRVSPDAQVIFMNR--ESANK 372
>Os08g0460700 Leucine-rich repeat 2 containing protein
Length = 297
Score = 278 bits (712), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 147/265 (55%), Positives = 182/265 (68%), Gaps = 8/265 (3%)
Query: 43 HIHDVVRTSALXXXXXXXXESLPTVDLTRSPGISASDVDALLLRRTAPARSFRLATRDR- 101
HI++VVRTSAL +LP+VDL RSPGIS DVDA+LLRR A R+FRL R R
Sbjct: 38 HIYEVVRTSALSRAWRRRWAALPSVDLARSPGISEPDVDAILLRRPAALRTFRLVARARK 97
Query: 102 -SWSPTAFHDWXXXXXXXXXXXXXXXXXXXXXYTYINSKLNSCLFSFRELTSLRLHCCGL 160
+WS A H W + + +L+ CLFS E TSL L+ C L
Sbjct: 98 GTWSVDALHHWLLYLSRSGVQALDLS------FPELRFRLHPCLFSCGEFTSLALNSCRL 151
Query: 161 PHVPTEFAGFPNLKTMYLSVVKVQRHGGRGLATLIAASPVLQEVTLIDVVLIGDGPDEDW 220
P P+ FAGFPN+KT+ L V V RHGG+ +A LIAASP+L+++ L+ V LIGDGPDE+W
Sbjct: 152 PPAPSGFAGFPNIKTLRLEDVDVPRHGGKEVAALIAASPLLEDLGLLAVKLIGDGPDEEW 211
Query: 221 VIRASNLRKLTIALGSEYGGRMEDLPRLEECCLFGLNYAKYLTGMARVTKLTFYCNCMLS 280
VIRA NLR LT+ + +GGR+EDLPRL+E LFG N AK+L GM++VTKL F+CNCMLS
Sbjct: 212 VIRAPNLRNLTMVCETAFGGRVEDLPRLDEGRLFGPNCAKFLAGMSQVTKLDFFCNCMLS 271
Query: 281 TEVDVLERLPFLFENLRSLILGVNF 305
TEVDVLERLPFLF+NL++L L VNF
Sbjct: 272 TEVDVLERLPFLFKNLKNLSLAVNF 296
>Os09g0443000 Cyclin-like F-box domain containing protein
Length = 554
Score = 199 bits (505), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 148/412 (35%), Positives = 212/412 (51%), Gaps = 31/412 (7%)
Query: 23 APDALGSLPLDVLDSILSRLHIHDVVRTSALXXXXXXXXESLPTVDLTRSPGISASDVDA 82
A DAL SLP DVLD +L+RL + D VRTSAL R P +AS A
Sbjct: 29 AKDALISLPPDVLDGVLTRLGLRDAVRTSALSRAWR-------RRRARRWPPSTASSSAA 81
Query: 83 LLLR-RTAPARSFRLATRDRSWSPTAFHDWXXXXXXXXXXXXXXXXXXXXXYTYINSKLN 141
R R+ A +L TR HDW + + ++
Sbjct: 82 CPGRVRSFSAYVDKLTTR-------RAHDWILVLARRGVESLDLASP-----IHNHLAVH 129
Query: 142 SCLFSFRELTSLRLHCCGLPHVPTEFAGFPNLKTMYLSVVKVQRHGGRGLATLIAASPVL 201
S +FS L L L C +P +P FAGFPNL+++ L V ++ G L +I SP+L
Sbjct: 130 SSVFSCDRLAYLNLFACDIPPLPPGFAGFPNLRSLTLDHVWLRAGGEYQLEEIIENSPLL 189
Query: 202 QEVTLIDVVLIGDGPDEDWVIRASNLRKLTIALGSEYGGRMEDLPRLEECC------LFG 255
+ + L + + GD +WVIRA NL+ LTI ++YG + DLPRL L G
Sbjct: 190 EMLVLSGIFIDGDDI-INWVIRAPNLQHLTICSPNDYGWNLLDLPRLRSAVIDLWDYLGG 248
Query: 256 LNYAKYLTGMARVTKLTFYCNCMLSTEVDVLERLPFLFENLRSLILG---VNFCMMSHIL 312
++A++L + V KL + + S +LE LP F++L+SL ++FC + IL
Sbjct: 249 RDFAEFLGKLLHVRKLHLFVSYQPSNGAKILETLPCTFDSLKSLKSLKLYMDFCELPAIL 308
Query: 313 AIFCLLRSAPVLEELDVWNWSEGAQEMEANDVFLNAQWINHMFAKLHVVRMKKVYCLNNE 372
IFCLLR+AP LE+L + ++ Q++EAN VF NA+W M A L +V++ ++ L NE
Sbjct: 309 TIFCLLRNAPNLEKLKIM-ITDNEQKVEANGVFQNAEWTGGMCANLQIVQITRISWLPNE 367
Query: 373 MHFIEFILSKARVLRVXXXXXXXXXXXXIEEAIIDITEYPRASPDAQVIFMG 424
M FIE ILSKA +LR E+A+ ++ +Y RASP AQ++F G
Sbjct: 368 MSFIELILSKASLLRTISVTHGDKCLMSNEDALSELLKYKRASPQAQILFKG 419
>Os08g0462300 Cyclin-like F-box domain containing protein
Length = 418
Score = 171 bits (432), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 140/415 (33%), Positives = 200/415 (48%), Gaps = 17/415 (4%)
Query: 14 SGQRRLVGPAPDALGSLPLDVLDSILSRLHIHDVVRTSALXXXXXXXXESLPTVDLTRSP 73
+ +RRL PD L LP +++D I+SRL I DVVRTSAL ES+ +DL+
Sbjct: 8 AKRRRLPAAEPDFLAGLPPEIVDDIISRLDIRDVVRTSALSRAWRRRWESVRGLDLSFRS 67
Query: 74 GISASDVDALLLRRTAPARSFRLATRDRSWSPTAFHDWXXXXXXXXXXXXXXXXXXXXXY 133
A+ + ++L R AP R L R + A H
Sbjct: 68 SAPAAAISSVLKRAAAPVRGLGLRVPGRRFR-RAVHWLRLLPRKRVQSLDLHFEFVFGEK 126
Query: 134 TYINSKLNSCLFSFRELTSLRLHCC--GLPHVPTEFAGFPNLKTMYLSVVKVQRHGGRGL 191
++ + SCL ELT+L L C P F GFP L + LS + + RHGGR L
Sbjct: 127 PSLDPSILSCL----ELTTLVLEGCIFPPSPPPPSFVGFPELTKLSLSEIDLPRHGGRRL 182
Query: 192 ATLIAASPVLQEVTLIDVVLIGDGPDEDWVIRASNLRKLTIALGSEYGGRMEDLPRLEEC 251
+IAASP+L E++L +V + E W IR NLR + I +YG R+ +LPRLE
Sbjct: 183 EAMIAASPLLVELSLSNVRSLHHW--ERWFIRGPNLRSVWIWTDYDYGCRIGELPRLEHA 240
Query: 252 CLFGLNYA-----KYLTGMARVTKLTFYCNCMLSTEVDVLERLPFLFENLRSLILGVNFC 306
+F K L G++ L F + ER F F+NLRSL L
Sbjct: 241 IVFASAIKTEVLCKILEGISHAETLGFDA-ITDQFNGNPPERFSFTFQNLRSLDLHACLD 299
Query: 307 MMSHILAIFCLLRSAPVLEELDVWNWSEGAQEMEAN-DVFLNAQWINHMFAKLHVVRMKK 365
+S +FC+LRSAP LE L++ + + + + F NAQ + +F +L V +
Sbjct: 300 QISSTSWVFCILRSAPNLETLEIEVDCDDDEVDAGSVEGFANAQASDDIFPRLRDVWLHS 359
Query: 366 VYCLNNEMHFIEFILSKARVLRVXXXXXXXXXXXXIEEAIIDITEYPRASPDAQV 420
+ C +NEM FI+F+LSKAR L + +EA I++ +Y RASP A++
Sbjct: 360 IDCSSNEMCFIKFVLSKARSLEL-FSVRVTSSRLSYQEACIEMAKYKRASPLAKL 413
>Os08g0461800 Conserved hypothetical protein
Length = 243
Score = 137 bits (346), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 91/241 (37%), Positives = 131/241 (54%), Gaps = 12/241 (4%)
Query: 194 LIAASPVLQEVTLIDVVLIGDGPDEDWVIRASNLRKLTIALGSEYGGRMEDLPRLEECCL 253
+I SP L + L +V + D EDW+I+A NL +LTI +YG +++DLP +++ +
Sbjct: 1 MIRMSPSLVSLELSNVE-VTDDDFEDWIIQAPNLERLTITSDIDYGWQIQDLPSIQDANI 59
Query: 254 ------FGLNYAKYLTGMARVTKLTFYCNCMLSTEVDVLERLPFLFENLRSLILGVNFCM 307
++ K LT +A+V +L + + S + +VLE + F+ LRSL L NF
Sbjct: 60 NIEDYSIDRDFVKLLTSLAQVGELELF---IPSADGNVLEGISCSFQKLRSLTLHTNFYK 116
Query: 308 MSHILAIFCLLRSAPVLEELDVWNWSEGAQEMEANDVFLNAQWINHMFAKLHVVRMKKVY 367
S IL+ F LL AP L L++ Q E + FLNA W N +FA L V +K
Sbjct: 117 ASSILSTFGLLTRAPNLLHLEIEITDHENQSDEVDIDFLNALWTNSLFANLDFVSIKSAT 176
Query: 368 CLNNEMHFIEFILSKARVLRVXXXXXXXXXXXXI--EEAIIDITEYPRASPDAQVIFMGV 425
C +NEM FIEF+LSKAR+L EEAII++ +Y RASP A+V F +
Sbjct: 177 CWSNEMRFIEFVLSKARLLGEFYIYHDDTGSYSKPREEAIIELAKYKRASPKAKVFFRDM 236
Query: 426 E 426
E
Sbjct: 237 E 237
>Os08g0462200
Length = 358
Score = 124 bits (310), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 112/360 (31%), Positives = 162/360 (45%), Gaps = 27/360 (7%)
Query: 14 SGQRRLVGPAPDALGSLPLDVLDSILSRLHIHDVVRTSALXXXXXXXXESLPTVDLTRSP 73
+ +RR PD L +LP +++D+I+SRL + DVVRTS L S+ +DL
Sbjct: 6 AKRRRSPAVEPDYLAALPPEIVDNIISRLGVRDVVRTSVLSHAWRRRWRSVRGLDLDFRS 65
Query: 74 GISASDVDALLLRRTAPARSFRLATRDRSWSPTAFHDWXXXXXXXXXXXXXXXXXXXXXY 133
A+ + ++L R AP R+ L R W FH
Sbjct: 66 SDPAAAISSVLKRSAAPVRTVTLRV-PRRW----FHRAVRWLRLLPRKRVQSLHLYFEMI 120
Query: 134 TYINSKLN---SCLFSFRELTSLRLHCCGLPHVPTEFAGFPNLKTMYLSVVKVQRHGGRG 190
+ I K N S + C P P F GF L + LS V++ HG R
Sbjct: 121 SIIEGKHNLDPSIFSCLELSSLSLAGCTFPPPQPPSFVGFLKLTKLSLSEVELPPHGERQ 180
Query: 191 LATLIAASPVLQEVTLIDVVLIGDGPDEDWVIRASNLRKLTI-ALGSEYGGRMEDLPRLE 249
L +IAASP+L E++L +V E W +R N+R L I A+ ++G R+ +LPRLE
Sbjct: 181 LEAMIAASPLLLELSLDNVHSFHHS--EVWFVRGPNIRSLRIWAVDQDFGCRIGELPRLE 238
Query: 250 ECCLF------GLNYAKYLTGMARVTKLTFYCNCMLSTEVD-VLERLPFLFENLRSLILG 302
+ +F K L G+A V L F N ++ D ER F F+NLRSL L
Sbjct: 239 DAVIFLDSEVTTQVLCKTLEGIAHVESLDF--NALMHQFSDNPPERFSFTFQNLRSLDLH 296
Query: 303 VNFCMMSHILAIFCLLRSAPVLEELDVWNWSEGAQEMEAND----VFLNAQWINHMFAKL 358
+S +F +LR AP LE+L++ G + +D F NAQ + +F +L
Sbjct: 297 ACLDQISSTSLVFSILRCAPNLEKLEI---EVGCYDDLVDDGTVEGFANAQTSDDIFPRL 353
>Os08g0461700 Conserved hypothetical protein
Length = 256
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 90/256 (35%), Positives = 134/256 (52%), Gaps = 13/256 (5%)
Query: 180 VVKVQRHGGRGLATLIAASPVLQEVTLIDVVLIGDGPDEDWVIRASNLRKLTIALGSEYG 239
+V + HG L +I+ S +L+ + L V G+ DE WVIRA NL+ LTI +Y
Sbjct: 1 MVNLPEHGESTLEAMISLSLLLEWLDLRSVCTDGNQMDE-WVIRAPNLKHLTIESDYDYL 59
Query: 240 GRMEDLPRLEECCL------FGLNYAKYLTGMARVTKLTFYCNCMLSTEVDVLERLPFLF 293
R+E+LP L+ + ++ + LT A+V+ L + +L+TE + L+ L
Sbjct: 60 WRVEELPSLQTATVKVDDDSTDRDFVQLLTCFAQVSMLELH---LLATEDNALDGLSCSL 116
Query: 294 ENLRSLILGVNFCMMSHILAIFCLLRSAPVLEELDV-WNWSEGAQEMEANDVFLNAQWIN 352
E L+SL L NF +S IL IF LL P + LD+ SE Q E + F N N
Sbjct: 117 EKLKSLTLHANFRSVSSILCIFSLLMRCPNIGVLDIEIMGSEFPQNDEIDAEFFNTLETN 176
Query: 353 HMFAKLHVVRMKKVYCLNNEMHFIEFILSKARVLRV--XXXXXXXXXXXXIEEAIIDITE 410
+F L + ++ CL+N+MHFIEF+LS+ R+L EEA+I+I +
Sbjct: 177 DLFTNLDDITLRNAPCLSNDMHFIEFVLSRVRLLSKFWVFRDDSNSLSKPSEEAVIEIAK 236
Query: 411 YPRASPDAQVIFMGVE 426
Y RASP ++V F +E
Sbjct: 237 YRRASPKSRVFFRSME 252
>Os08g0267000 Cyclin-like F-box domain containing protein
Length = 439
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 113/385 (29%), Positives = 174/385 (45%), Gaps = 31/385 (8%)
Query: 25 DALGSLPLDVLDSILSRLHIHDVVRTSALXXXXXXXXESLPTVDLTRSPGISASDVDALL 84
D L SLP DVLD IL+R+ +VRT L ES+ +D+ G + L
Sbjct: 8 DELMSLPTDVLDIILARIPFDLLVRTCCLSHAWRRRWESVRYLDIRLGWGCRGAPSARDL 67
Query: 85 LRRTAPARSFRLATRDR------SWSPTAFHDWXXXXXXXXXXXXXXXXXXXXXYTYINS 138
R AP FR R +W P A Y I+
Sbjct: 68 WRCAAPVVGFRACVHARHFHHLPTWFP-ALASKGVRELAIECDGVRRGHPDTPPYWVIDQ 126
Query: 139 KLNSCLFSFRELTSLRLHCCGLPHVPTEFAGFPNLKTMYLSVVKVQRHGGRG-LATLIAA 197
L SC L L L C +P P F GFP+L ++ L V + GG + L+AA
Sbjct: 127 GLFSCA----ALAVLHLEDCDMPLAPPGFRGFPSLVSLTLRGVTLPAEGGGARVEHLVAA 182
Query: 198 SPVLQEVTL--IDVVLIGD--GPDEDWVIRASNLRKLTIALGSEYGGRM-EDLPRLEECC 252
+P+L E+ L +DV + D P W +RA LR L +A + G R+ E+ P LEE
Sbjct: 183 APLLAELRLDDVDVEELEDPTPPLYKWAVRAPRLRVLKMATRLDIGCRIPEEPPLLEEAY 242
Query: 253 L-FG---LNYAKYLTGMARVTKLTFYCNCMLSTEVDVLERLPFLFENLRSLILGVNFCMM 308
+ G +++ + G+ V KL F N E LE + F+NLR + + NF
Sbjct: 243 IDIGNSFMSFHEIFRGIITVRKLWF--NIHEFNEYP-LEGISCKFDNLREVHVTTNFGQQ 299
Query: 309 SHILAIFCLLRSAPVLEELDV------WNWSEGAQEMEANDVFLNAQWINHMFAKLHVVR 362
+++F LLR AP +E+L + ++ + E+E +D F+++ + F+ L V
Sbjct: 300 PSTMSLFSLLRCAPYIEDLSIEAEDISFSHRDDPYEIEEDD-FISSGINENSFSSLKYVS 358
Query: 363 MKKVYCLNNEMHFIEFILSKARVLR 387
+ + +N++ F++F+LSK L+
Sbjct: 359 LSGITYSSNQLRFMKFLLSKTESLQ 383
>Os08g0461400 Conserved hypothetical protein
Length = 207
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/203 (33%), Positives = 113/203 (55%), Gaps = 9/203 (4%)
Query: 214 DGPDEDWVIRASNLRKLTIALGSEYGGRMEDLPRLEECCL------FGLNYAKYLTGMAR 267
+G WVI+A NL+ I + G ++ DL LEE + + ++ K +TG+++
Sbjct: 8 NGVYHQWVIQAPNLQNFFITGLYDDGWQIGDLTFLEEATVDWPLYSYDRDFVKLITGLSQ 67
Query: 268 VTKLTFYCNCMLSTEVDVLERLPFLFENLRSLILGVNFCMMSHILAIFCLLRSAPVLEEL 327
+L F M +V+VLE L F+NL+ L L + ++S++L+ FC++R+A LE L
Sbjct: 68 ARELDF---AMPVRDVNVLEGLSCSFKNLKCLSLCTSLHLLSNVLSFFCIIRNASKLETL 124
Query: 328 DVWNWSEGAQEMEANDVFLNAQWINHMFAKLHVVRMKKVYCLNNEMHFIEFILSKARVLR 387
+ + + Q+ E ++ FLN QW + +F+ L V ++ + C +EMHFIEFILSKAR L
Sbjct: 125 RIKLFDDSTQDDEVDNDFLNGQWTDDLFSNLKSVYVRNMTCKLSEMHFIEFILSKARNLE 184
Query: 388 VXXXXXXXXXXXXIEEAIIDITE 410
EEA+I++ +
Sbjct: 185 KNDVCLAEDCSKSNEEAVIELAK 207
>Os08g0461000 Cyclin-like F-box domain containing protein
Length = 279
Score = 105 bits (262), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 80/244 (32%), Positives = 119/244 (48%), Gaps = 11/244 (4%)
Query: 17 RRLV-GPAPD----ALGSLPLDVLDSILSRLHIHDVVRTSALXXXXXXXXESLPTVDLTR 71
RRL G AP +L SLP ++L++I+ RL + VRTSAL ES P +
Sbjct: 11 RRLSPGAAPQQPKPSLNSLPSEILENIVGRLPVRQAVRTSALSRDWRRRWESSPGIRFGW 70
Query: 72 SPGISASDVDA--LLLRRTAPARSFRLATRDRSWSPTAFHDWXXXXXXXXXXXXXXXXXX 129
G + + +L R P R FR + S A +W
Sbjct: 71 GSGEAGAAAAVGQILARYACPVRHFRHGWIESGGSARA-DEWFVVLAGRGVEHLALIFSE 129
Query: 130 XXXYTYINSKLNSCLFSFRELTSLRLHCCGLPHVPTEFAGFPNLKTMYLSVVKVQRHGGR 189
+ + L++ +FS RELT L L C LP P++F+GFPNL + L++V HG R
Sbjct: 130 ADNFLF--HTLHAAIFSCRELTKLELGSCRLPAAPSDFSGFPNLTVLTLTMVAFPPHGER 187
Query: 190 GLATLIAASPVLQEVTLIDVVLIGDGPDEDWVIRASNLRKLTIALGSEYGGRMEDLPRLE 249
L +I+++P+LQ + L +V + G DE WVIRA NL+ L I L ++ +E LP ++
Sbjct: 188 TLEAMISSAPLLQSLELKNVSMEGGEWDE-WVIRAPNLKDLIIQLEFDFLWEIEQLPSIQ 246
Query: 250 ECCL 253
+
Sbjct: 247 TATI 250
>Os08g0268200
Length = 394
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 84/289 (29%), Positives = 129/289 (44%), Gaps = 56/289 (19%)
Query: 144 LFSFRELTSLRLHCCGLPHVPTEFAGFPNLKTMYLSVVKVQRHG-GRGLATLIAASPVLQ 202
LFS L L L C +P P F GFPNL+ + L V + G G L LI A+ L
Sbjct: 27 LFSCAALVRLDLEQCDMPAAPPGFPGFPNLERLDLVYVTLPFAGAGTQLEHLIVAAEKLA 86
Query: 203 EVTLIDVVLIGDGPDEDWVIRASNLRKL--TIALGSEYGGRME-DLPRLEECC-----LF 254
+ L V+ G + W IRA LR+L T+A+G + G R+ LP LEE LF
Sbjct: 87 VLKLSLVITTTGGGVDTWAIRAPKLRELFITMAMGDDNGCRIPMPLPMLEEATISFDRLF 146
Query: 255 GLNYAKYLTGMARVTKLTFYCNCMLSTEVDVLERLPFLFENLRSLILGVNFCMMSHILAI 314
G +L ++ +++LE + FEN+R L ++F S++L++
Sbjct: 147 GTQ--DFLDAFQNISTFN----------INMLEGITCKFENIREARLTIDFGQRSNVLSL 194
Query: 315 FCLLRSAPVLEEL---------------------------------DVWNWSEGAQEMEA 341
LL+ AP +E L D + + E E
Sbjct: 195 ASLLKFAPHIEHLCISIAYSEWDEDEIDEDPLNSEDEIDEDPLNSEDEIDEDSLSSEDEI 254
Query: 342 NDVFLNAQWINHMFAKLHVVRMKKVYCLN--NEMHFIEFILSKARVLRV 388
+ FLN++ +++FA L V + +V + N+M F++ +LSKAR L+
Sbjct: 255 YEYFLNSEISSYLFASLKYVSLTEVKVKDNSNQMCFMKHLLSKARSLQT 303
>Os09g0443100
Length = 412
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 103/387 (26%), Positives = 164/387 (42%), Gaps = 38/387 (9%)
Query: 30 LPLDVLDSILSRLHIHDVVRTSALXXXXXXXXESLPTVDLTR---------------SPG 74
LP ++ D+IL+RL + D R+S L L +D +
Sbjct: 10 LPWELQDAILARLPLRDAARSSVLSSSWGRSWRHLGELDFVSSPPPAAASLPVAAATAVA 69
Query: 75 ISASDVDALLLRR-TAPARSFRLATRDRSWSPTAFHDWXXXXXXXXXXXXXXXXXXXXXY 133
+ +DA+LL + P + RL D W Y
Sbjct: 70 CDKAAIDAILLHQHPGPVQRVRLRVTDELL--PGVPAWMASLSEKGIQSLDLTVRAM--Y 125
Query: 134 TYINSKLNSCLFSFRELTSLRLHCCGLPHVPTEFAGFPNLKTMYLSVVKVQRHGGRGLAT 193
++ +F+ R L L L LP P FAGFP L T LS+ R L
Sbjct: 126 RPPPHPMHRSIFACRALRRLSLGRFALPAAPEHFAGFPALAT--LSLTGTAFRNARDLEA 183
Query: 194 LIAASPVLQEVTL----IDVVLIGDGPDEDWVIR--ASNLRKLTI-ALGS-EYGGRMEDL 245
L+A SP L+E+ + +DV G D +R +S+LR L I +G+ E+ G L
Sbjct: 184 LVAMSPRLEELRMCCIAVDVDCREHGGDGRRKVRMVSSSLRFLRIDGMGNVEFVG--ARL 241
Query: 246 PRLEECCLFGLNYA---KYLTGM-ARVTKLTFYCNCMLSTEVDVLERLPFLFENLRSLIL 301
PR+ + +Y L+ M + L +Y + + +L+ LP ++NL+ L +
Sbjct: 242 PRVSQADFAQASYPSAPNLLSAMVTSLETLDYYYYALPLSPTKLLKGLPSSYKNLKRLKV 301
Query: 302 GVNFCMMSHILAIFCLLRSAPVLEELDVWNWSEGAQEMEANDVFLNAQWINHMFAKLHVV 361
++F IL+ LR+AP L +L + ++++ + L A+ ++ L +
Sbjct: 302 HLDFNHAPPILSTLNFLRTAPNLTQLVIQDFTDDSYAQSPYP--LAAELYGNLCPSLLFL 359
Query: 362 RMKKVYCLNNEMHFIEFILSKARVLRV 388
+M V NNEM FI ILSKAR+L+V
Sbjct: 360 QMSYVTSQNNEMDFIRLILSKARMLQV 386
>Os08g0267800 Cyclin-like F-box domain containing protein
Length = 463
Score = 89.4 bits (220), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 118/424 (27%), Positives = 176/424 (41%), Gaps = 71/424 (16%)
Query: 16 QRRLVGPAP----DALGSLPLDVLDS-ILSRLHIHDVVRTSALXXXXXXXXESLPTVDLT 70
+R+ V P P D L +LP D+LD IL+ L +VRTS L ES+ +++
Sbjct: 17 KRQRVAPPPPRRTDMLMALPPDILDDRILALLPFDKLVRTSCLSRAWRRRWESVRNLEIE 76
Query: 71 RSPGISASDVDALLLRRTAPARSF--RLATRD--------RSWSPTAFHDWXXXXXXXXX 120
S L R P R F R+A RD R+ + D
Sbjct: 77 LPRAYSGGG--RALWRCARPVRFFSARVARRDVFRAARWLRALARKGVQDLSLEFSLAGK 134
Query: 121 XXXXXXXXXXXXYTYINSKLNSCLFSFRELTSLRLHCCGLPHVPTEFAGFPNLKTMYLSV 180
LFS L L L C +P P F GFPNL+ + L
Sbjct: 135 QRPLP---------------GPALFSCAALVQLDLEQCDMPAAPPGFLGFPNLERLDLVY 179
Query: 181 VKVQRHG-GRGLATLIAASPVLQEVTLIDVVLIGDGPDEDWVIRASNLRKL--TIALGSE 237
V + G G L LI A+ L + L V+ I G + W IRA LRKL T+ +G +
Sbjct: 180 VTLPFAGAGTQLEHLIVAAEKLAVLNLSPVITINGGGVDTWAIRAPKLRKLYITMEMGDD 239
Query: 238 YGGRME-DLPRLEECC-----LFGL-NYAKYLTGMARVTKLTFYCNCMLSTEVDVLERLP 290
G R+ LP LEE LFG ++ ++ V KL F + +++LE +
Sbjct: 240 NGCRIPMPLPMLEEVTISFDRLFGTQDFLDAFQNISTVNKLFFKSD---KFNINMLEGIT 296
Query: 291 FLFENLRSLILGVNFCMMSHILAIFCLLRSAPVLEEL----------------------- 327
FENLR L ++F S +L++ LL+ AP +E L
Sbjct: 297 CKFENLREGGLIIDFGQRSSVLSLVSLLKFAPHIEHLYIRTDHSILDPVSSEDEMDEDSL 356
Query: 328 ---DVWNWSEGAQEMEANDVFLNAQWINHMFAKLHVVRMKKVYCLNNEMHFIEFILSKAR 384
D ++ + E ++ LN++ + + A L V + + +N+M F++ +LSKAR
Sbjct: 357 NSEDEFDEDSLNSQDEIDEDSLNSEISSDLLASLKYVTLINMKYNSNQMCFMKLLLSKAR 416
Query: 385 VLRV 388
L+
Sbjct: 417 SLQT 420
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.324 0.138 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,644,795
Number of extensions: 477000
Number of successful extensions: 1599
Number of sequences better than 1.0e-10: 16
Number of HSP's gapped: 1563
Number of HSP's successfully gapped: 17
Length of query: 432
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 328
Effective length of database: 11,605,545
Effective search space: 3806618760
Effective search space used: 3806618760
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 157 (65.1 bits)