Os08g0460700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Leucine-rich repeat 2 containing protein.
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Os08g0460700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Leucine-rich repeat 2 containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 51.85 | 0.338 | 7.94 | 0.0513 | 0.444 | 1.06 | -1.37 | -0.665 | -0.000915 | 6.72 | 24.46 | 15 | -- | -- |
| 52.43 | 0.337 | 7.95 | -0.0471 | 0.468 | 1.11 | -1.32 | -- | -0.0267 | 6.42 | 24.19 | 21 | -- | -- |
| 54.52 | 0.344 | 7.94 | 0.0395 | 0.455 | 0.988 | -- | -0.811 | -0.0153 | 5.21 | 24.2 | 98 | -- | -- |
| 55.62 | 0.347 | 7.95 | -0.0734 | 0.463 | 1.07 | -- | -- | -0.0402 | 5.36 | 24.1 | 88 | -- | -- |
| 61.67 | 0.366 | 7.91 | 0.303 | -- | 1.02 | -- | -1.99 | 0.106 | -- | 28.35 | 224 | -- | -- |
| 69.96 | 0.392 | 7.99 | -0.324 | 0.565 | -- | -0.86 | -- | -0.219 | 5.08 | -- | -- | -- | -- |
| 71.29 | 0.395 | 7.99 | -0.326 | 0.563 | -- | -- | -- | -0.215 | 4.43 | -- | -- | -- | -- |
| 64.83 | 0.375 | 7.94 | -0.0271 | -- | 1.15 | -- | -- | 0.0417 | -- | 26.74 | 131 | -- | -- |
| 55.75 | 0.348 | 7.95 | -- | 0.457 | 1.1 | -- | -- | -0.0335 | 5.39 | 24.1 | 88 | -- | -- |
| 88.25 | 0.439 | 8 | -0.303 | -- | -- | -- | -- | -0.2 | -- | -- | -- | -- | -- |
| 74.08 | 0.403 | 7.98 | -- | 0.557 | -- | -- | -- | -0.179 | 4.45 | -- | -- | -- | -- |
| 64.85 | 0.375 | 7.94 | -- | -- | 1.16 | -- | -- | 0.0468 | -- | 26.73 | 132 | -- | -- |
| 90.68 | 0.444 | 7.99 | -- | -- | -- | -- | -- | -0.167 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 47.57 | temperature | 10 | 720 | > th | dose dependent | sin | 18 | NA |
| 2 | 47.65 | temperature | 10 | 720 | > th | dose dependent | rect. | 9 | 17 |
| 12 | 48.02 | temperature | 10 | 720 | > th | dose dependent | rect. | 11 | 15 |
| 19 | 48.14 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 9 |
| 51 | 48.81 | temperature | 30 | 720 | < th | dose dependent | sin | 15 | NA |
| 59 | 48.86 | radiation | 1 | 720 | < th | dose dependent | rect. | 6 | 17 |
| 61 | 48.87 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 5 |
| 101 | 49.21 | temperature | 30 | 720 | < th | dose dependent | rect. | 14 | 15 |
| 109 | 49.28 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 10 |
| 143 | 49.44 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 12 |
| 153 | 49.49 | radiation | 1 | 720 | < th | dose dependent | sin | 22 | NA |
| 212 | 49.79 | temperature | 30 | 720 | < th | dose dependent | rect. | 11 | 15 |
| 223 | 49.84 | radiation | 1 | 720 | < th | dose independent | rect. | 7 | 16 |
| 289 | 50.18 | radiation | 1 | 720 | < th | dose dependent | rect. | 6 | 13 |
| 346 | 50.50 | radiation | 1 | 720 | < th | dose independent | sin | 22 | NA |
| 360 | 50.58 | radiation | 1 | 720 | < th | dose dependent | rect. | 21 | 22 |
| 375 | 50.67 | radiation | 1 | 720 | > th | dose independent | rect. | 8 | 11 |
| 443 | 50.90 | radiation | 1 | 720 | > th | dose independent | sin | 15 | NA |
| 462 | 51.00 | radiation | 1 | 720 | > th | dose independent | sin | 19 | NA |
| 466 | 51.01 | radiation | 1 | 720 | < th | dose dependent | rect. | 3 | 15 |
| 479 | 51.07 | radiation | 1 | 720 | < th | dose dependent | rect. | 15 | 8 |
| 570 | 51.51 | temperature | 25 | 720 | > th | dose independent | rect. | 11 | 13 |
| 586 | 51.62 | temperature | 30 | 270 | < th | dose dependent | sin | 11 | NA |
| 589 | 51.64 | radiation | 1 | 720 | > th | dose independent | rect. | 15 | 15 |
| 620 | 51.74 | temperature | 25 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 630 | 51.81 | temperature | 25 | 720 | > th | dose independent | sin | 19 | NA |
| 669 | 51.97 | radiation | 1 | 720 | < th | dose independent | rect. | 7 | 12 |
| 676 | 51.98 | temperature | 25 | 10 | < th | dose dependent | rect. | 16 | 20 |
| 677 | 51.98 | temperature | 25 | 10 | < th | dose dependent | rect. | 14 | 22 |
| 678 | 51.98 | temperature | 25 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 681 | 52.00 | radiation | 1 | 720 | > th | dose independent | rect. | 15 | 4 |
| 704 | 52.03 | temperature | 25 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 706 | 52.03 | temperature | 25 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 732 | 52.10 | radiation | 1 | 720 | < th | dose independent | rect. | 15 | 8 |
| 734 | 52.10 | temperature | 25 | 10 | < th | dose dependent | no | NA | NA |
| 745 | 52.11 | temperature | 25 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 748 | 52.11 | temperature | 25 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 756 | 52.13 | temperature | 25 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 796 | 52.21 | temperature | 25 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 802 | 52.23 | temperature | 25 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 879 | 52.43 | radiation | 1 | 720 | < th | dose dependent | rect. | 15 | 4 |
| 883 | 52.44 | radiation | 1 | 720 | < th | dose independent | rect. | 3 | 15 |
| 905 | 52.52 | radiation | 1 | 720 | < th | dose independent | rect. | 21 | 22 |
| 962 | 52.65 | temperature | 25 | 720 | < th | dose independent | rect. | 11 | 21 |
| 990 | 52.73 | temperature | 20 | 720 | > th | dose dependent | no | NA | NA |