Os08g0461800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
FiT-DB / Search/ Help/ Sample detail
|
Os08g0461800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Conserved hypothetical protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 13.94 | 0.175 | 10.4 | 0.636 | 0.88 | 0.969 | -0.856 | -1.75 | 0.19 | 20 | 0.6971 | 731 | -- | -- |
| 15.51 | 0.183 | 10.4 | 0.647 | 1.08 | 1.26 | -0.0625 | -- | 0.172 | 20.6 | 0.1563 | 855 | -- | -- |
| 14.88 | 0.18 | 10.4 | 0.624 | 0.864 | 0.948 | -- | -0.947 | 0.177 | 19.9 | 0.17 | 709 | -- | -- |
| 14.99 | 0.18 | 10.4 | 0.677 | 1.2 | 1.46 | -- | -- | 0.205 | 21.1 | 0.17 | 959 | -- | -- |
| 18.96 | 0.203 | 10.4 | 0.7 | -- | 0.81 | -- | -0.529 | 0.183 | -- | 2.016 | 1660 | -- | -- |
| 17.9 | 0.198 | 10.4 | 0.481 | 0.489 | -- | -0.544 | -- | 0.128 | 0.125 | -- | -- | -- | -- |
| 19.15 | 0.205 | 10.4 | 0.503 | 0.491 | -- | -- | -- | 0.132 | 23.9 | -- | -- | -- | -- |
| 19.46 | 0.205 | 10.4 | 0.688 | -- | 1 | -- | -- | 0.235 | -- | 1.15 | 1644 | -- | -- |
| 24.87 | 0.232 | 10.4 | -- | 0.764 | 0.605 | -- | -- | 0.104 | 22.2 | 1.26 | 970 | -- | -- |
| 34.33 | 0.274 | 10.4 | 0.518 | -- | -- | -- | -- | 0.138 | -- | -- | -- | -- | -- |
| 25.82 | 0.238 | 10.4 | -- | 0.497 | -- | -- | -- | 0.0755 | 24 | -- | -- | -- | -- |
| 26.92 | 0.242 | 10.4 | -- | -- | 0.377 | -- | -- | 0.098 | -- | 1.92 | 71 | -- | -- |
| 41.41 | 0.3 | 10.4 | -- | -- | -- | -- | -- | 0.0807 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 13.34 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 8 |
| 2 | 13.35 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 8 |
| 3 | 13.36 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 8 |
| 9 | 13.41 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 4 |
| 10 | 13.43 | radiation | 1 | 1440 | > th | dose independent | rect. | 13 | 4 |
| 13 | 13.44 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 4 |
| 25 | 13.54 | radiation | 1 | 1440 | < th | dose dependent | rect. | 15 | 1 |
| 26 | 13.55 | radiation | 1 | 1440 | > th | dose independent | rect. | 15 | 1 |
| 27 | 13.55 | radiation | 1 | 1440 | < th | dose independent | rect. | 15 | 1 |
| 41 | 13.66 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 21 |
| 52 | 13.67 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 21 |
| 59 | 13.68 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 15 |
| 60 | 13.68 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 19 |
| 68 | 13.70 | radiation | 1 | 1440 | > th | dose independent | sin | 21 | NA |
| 72 | 13.71 | radiation | 1 | 1440 | < th | dose independent | sin | 21 | NA |
| 73 | 13.71 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 88 | 13.71 | radiation | 1 | 720 | < th | dose dependent | rect. | 22 | 19 |
| 89 | 13.71 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 20 |
| 113 | 13.72 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 11 |
| 114 | 13.72 | radiation | 1 | 720 | < th | dose dependent | rect. | 1 | 16 |
| 131 | 13.73 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 18 |
| 217 | 13.77 | radiation | 1 | 720 | < th | dose dependent | rect. | 21 | 22 |
| 223 | 13.78 | radiation | 1 | 1440 | < th | dose dependent | sin | 21 | NA |
| 247 | 13.80 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 311 | 13.84 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 23 |
| 312 | 13.85 | radiation | 1 | 1440 | < th | dose independent | rect. | 10 | 2 |
| 324 | 13.85 | radiation | 1 | 1440 | < th | dose dependent | rect. | 10 | 2 |
| 346 | 13.88 | humidity | 80 | 1440 | < th | dose independent | rect. | 23 | 20 |
| 352 | 13.89 | humidity | 80 | 1440 | < th | dose independent | rect. | 23 | 18 |
| 358 | 13.90 | radiation | 1 | 1440 | > th | dose independent | rect. | 10 | 2 |
| 376 | 13.92 | humidity | 80 | 1440 | < th | dose independent | rect. | 9 | 6 |
| 381 | 13.93 | humidity | 80 | 1440 | > th | dose independent | rect. | 9 | 6 |
| 399 | 13.95 | radiation | 1 | 720 | < th | dose dependent | rect. | 18 | 23 |
| 400 | 13.96 | humidity | 80 | 1440 | < th | dose independent | sin | 1 | NA |
| 414 | 13.98 | radiation | 1 | 720 | < th | dose dependent | sin | 2 | NA |
| 421 | 13.99 | humidity | 80 | 1440 | < th | dose independent | rect. | 8 | 8 |
| 422 | 13.99 | humidity | 80 | 1440 | < th | dose independent | rect. | 3 | 14 |
| 426 | 13.99 | humidity | 80 | 1440 | > th | dose independent | rect. | 24 | 17 |
| 427 | 13.99 | humidity | 80 | 1440 | > th | dose independent | rect. | 24 | 19 |
| 438 | 14.00 | radiation | 1 | 720 | < th | dose dependent | rect. | 13 | 23 |
| 439 | 14.01 | humidity | 80 | 1440 | > th | dose independent | sin | 1 | NA |
| 444 | 14.01 | humidity | 80 | 1440 | < th | dose independent | rect. | 8 | 11 |
| 448 | 14.01 | humidity | 80 | 1440 | > th | dose independent | rect. | 3 | 14 |
| 449 | 14.01 | radiation | 1 | 720 | < th | dose dependent | no | NA | NA |
| 459 | 14.02 | humidity | 80 | 1440 | > th | dose independent | rect. | 3 | 16 |
| 466 | 14.03 | radiation | 1 | 720 | < th | dose independent | rect. | 22 | 21 |
| 469 | 14.03 | radiation | 1 | 1440 | < th | dose dependent | rect. | 4 | 13 |
| 552 | 14.07 | radiation | 1 | 720 | < th | dose independent | rect. | 23 | 18 |
| 569 | 14.08 | radiation | 1 | 720 | < th | dose independent | rect. | 1 | 16 |
| 596 | 14.10 | radiation | 1 | 1440 | > th | dose independent | rect. | 18 | 23 |
| 597 | 14.10 | radiation | 1 | 1440 | < th | dose independent | rect. | 18 | 23 |
| 611 | 14.11 | radiation | 1 | 720 | < th | dose independent | rect. | 5 | 23 |
| 612 | 14.11 | humidity | 70 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 627 | 14.11 | radiation | 1 | 720 | < th | dose dependent | rect. | 24 | 23 |
| 815 | 14.23 | radiation | 1 | 1440 | > th | dose independent | no | NA | NA |
| 816 | 14.23 | radiation | 1 | 1440 | < th | dose independent | no | NA | NA |