Os08g0461400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os08g0461400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 84.59 | 0.432 | 8.4 | -0.271 | 0.715 | 0.718 | 0.487 | -0.477 | 0.013 | 0.189 | 21.49 | 3971 | -- | -- |
| 84.94 | 0.429 | 8.38 | -0.157 | 0.713 | 0.771 | 0.473 | -- | 0.0444 | 0.191 | 21.4 | 4014 | -- | -- |
| 85.6 | 0.431 | 8.4 | -0.278 | 0.714 | 0.715 | -- | -0.439 | 0.0124 | 0.198 | 21.5 | 3974 | -- | -- |
| 85.87 | 0.432 | 8.38 | -0.166 | 0.71 | 0.771 | -- | -- | 0.0424 | 0.185 | 21.47 | 4010 | -- | -- |
| 117.08 | 0.504 | 8.4 | -0.27 | -- | 0.758 | -- | -0.454 | -0.0196 | -- | 22 | 3805 | -- | -- |
| 99.54 | 0.468 | 8.32 | 0.301 | 0.752 | -- | 0.465 | -- | 0.299 | 0.239 | -- | -- | -- | -- |
| 100.47 | 0.469 | 8.33 | 0.283 | 0.751 | -- | -- | -- | 0.297 | 0.261 | -- | -- | -- | -- |
| 117.19 | 0.504 | 8.38 | -0.2 | -- | 0.838 | -- | -- | 0.0191 | -- | 21.4 | 3846 | -- | -- |
| 86.44 | 0.433 | 8.37 | -- | 0.718 | 0.689 | -- | -- | 0.0816 | 0.188 | 21.4 | 3974 | -- | -- |
| 135.93 | 0.545 | 8.31 | 0.307 | -- | -- | -- | -- | 0.309 | -- | -- | -- | -- | -- |
| 102.58 | 0.474 | 8.33 | -- | 0.755 | -- | -- | -- | 0.266 | 0.281 | -- | -- | -- | -- |
| 116.46 | 0.503 | 8.36 | -- | -- | 0.781 | -- | -- | 0.0941 | -- | 24.1 | 3835 | -- | -- |
| 138.42 | 0.549 | 8.32 | -- | -- | -- | -- | -- | 0.275 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 83.41 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 3 |
| 2 | 83.49 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 8 |
| 3 | 83.53 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 3 |
| 4 | 83.53 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 8 |
| 11 | 83.72 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 21 | 83.79 | temperature | 20 | 1440 | > th | dose independent | rect. | 2 | 1 |
| 22 | 83.79 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 2 |
| 32 | 83.86 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 11 |
| 38 | 83.90 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 11 |
| 97 | 84.24 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 21 | 16 |
| 114 | 84.32 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 23 | 13 |
| 116 | 84.33 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 23 | 13 |
| 117 | 84.34 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 5 | 3 |
| 124 | 84.37 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 1 | 10 |
| 126 | 84.39 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 2 | 8 |
| 127 | 84.39 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 2 | 8 |
| 135 | 84.40 | atmosphere | 995 | 43200 | < th | dose dependent | sin | 9 | NA |
| 136 | 84.40 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 1 | 8 |
| 143 | 84.42 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 24 | 11 |
| 147 | 84.44 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 4 | 4 |
| 148 | 84.45 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 4 | 5 |
| 149 | 84.45 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 3 | 6 |
| 196 | 84.66 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 21 | 13 |
| 208 | 84.71 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 5 | 3 |
| 221 | 84.76 | temperature | 20 | 1440 | > th | dose independent | sin | 10 | NA |
| 251 | 84.86 | temperature | 20 | 1440 | < th | dose independent | sin | 10 | NA |
| 253 | 84.86 | humidity | 90 | 4320 | > th | dose independent | rect. | 18 | 1 |
| 268 | 84.93 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 281 | 84.98 | temperature | 25 | 4320 | < th | dose dependent | rect. | 22 | 1 |
| 312 | 85.15 | atmosphere | 995 | 43200 | < th | dose independent | sin | 7 | NA |
| 320 | 85.17 | temperature | 20 | 1440 | > th | dose dependent | rect. | 7 | 2 |
| 336 | 85.23 | humidity | 90 | 4320 | < th | dose independent | rect. | 17 | 2 |
| 364 | 85.33 | temperature | 15 | 4320 | > th | dose dependent | rect. | 22 | 1 |
| 378 | 85.37 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 383 | 85.38 | temperature | 25 | 4320 | < th | dose independent | rect. | 14 | 1 |
| 392 | 85.41 | temperature | 25 | 4320 | < th | dose dependent | rect. | 17 | 6 |
| 407 | 85.45 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 411 | 85.46 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 415 | 85.46 | temperature | 25 | 4320 | < th | dose dependent | rect. | 14 | 9 |
| 479 | 85.57 | temperature | 15 | 1440 | > th | dose dependent | rect. | 2 | 7 |
| 492 | 85.59 | temperature | 30 | 1440 | < th | dose dependent | rect. | 2 | 7 |
| 557 | 85.66 | temperature | 25 | 4320 | < th | dose dependent | sin | 16 | NA |
| 623 | 85.72 | temperature | 25 | 4320 | < th | dose dependent | rect. | 18 | 1 |
| 729 | 85.80 | temperature | 25 | 1440 | < th | dose dependent | rect. | 6 | 1 |
| 766 | 85.83 | temperature | 25 | 4320 | > th | dose independent | rect. | 14 | 1 |
| 854 | 85.89 | radiation | 30 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 976 | 85.97 | atmosphere | 995 | 43200 | > th | dose independent | sin | 7 | NA |