BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0461400 Os08g0461400|AK068721
(207 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0461400 Conserved hypothetical protein 393 e-110
Os08g0461800 Conserved hypothetical protein 161 3e-40
Os08g0461700 Conserved hypothetical protein 122 1e-28
Os08g0461300 Cyclin-like F-box domain containing protein 108 2e-24
Os09g0443000 Cyclin-like F-box domain containing protein 108 4e-24
Os08g0461100 Leucine-rich repeat 2 containing protein 100 6e-22
Os08g0460900 Cyclin-like F-box domain containing protein 99 2e-21
Os08g0462300 Cyclin-like F-box domain containing protein 88 4e-18
Os08g0267800 Cyclin-like F-box domain containing protein 67 6e-12
Os08g0267000 Cyclin-like F-box domain containing protein 67 8e-12
>Os08g0461400 Conserved hypothetical protein
Length = 207
Score = 393 bits (1009), Expect = e-110, Method: Compositional matrix adjust.
Identities = 193/207 (93%), Positives = 193/207 (93%)
Query: 1 MLLFPAKNGVYHQWVIQAPNLQNFFITGLYDDGWQIGDLTFLEEATVDWPLYSYDRDFVK 60
MLLFPAKNGVYHQWVIQAPNLQNFFITGLYDDGWQIGDLTFLEEATVDWPLYSYDRDFVK
Sbjct: 1 MLLFPAKNGVYHQWVIQAPNLQNFFITGLYDDGWQIGDLTFLEEATVDWPLYSYDRDFVK 60
Query: 61 LITGLSQARELDFAMPVRDVNVLEGLSCSFKNXXXXXXXXXXXXXXNVLSFFCIIRNASK 120
LITGLSQARELDFAMPVRDVNVLEGLSCSFKN NVLSFFCIIRNASK
Sbjct: 61 LITGLSQARELDFAMPVRDVNVLEGLSCSFKNLKCLSLCTSLHLLSNVLSFFCIIRNASK 120
Query: 121 LETLRIKLFDDSTQDDEVDNDFLNGQWTDDLFSNLKSVYVRNMTCKLSEMHFIEFILSKA 180
LETLRIKLFDDSTQDDEVDNDFLNGQWTDDLFSNLKSVYVRNMTCKLSEMHFIEFILSKA
Sbjct: 121 LETLRIKLFDDSTQDDEVDNDFLNGQWTDDLFSNLKSVYVRNMTCKLSEMHFIEFILSKA 180
Query: 181 RNLEKNDVCLAEDCSKSNEEAVIELAK 207
RNLEKNDVCLAEDCSKSNEEAVIELAK
Sbjct: 181 RNLEKNDVCLAEDCSKSNEEAVIELAK 207
>Os08g0461800 Conserved hypothetical protein
Length = 243
Score = 161 bits (407), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 91/201 (45%), Positives = 121/201 (60%), Gaps = 6/201 (2%)
Query: 11 YHQWVIQAPNLQNFFITGLYDDGWQIGDLTFLEEATVDWPLYSYDRDFVKLITGLSQARE 70
+ W+IQAPNL+ IT D GWQI DL +++A ++ YS DRDFVKL+T L+Q E
Sbjct: 23 FEDWIIQAPNLERLTITSDIDYGWQIQDLPSIQDANINIEDYSIDRDFVKLLTSLAQVGE 82
Query: 71 LDFAMPVRDVNVLEGLSCSFKNXXXXXXXXXXXXXXNVLSFFCIIRNASKLETLRIKLFD 130
L+ +P D NVLEG+SCSF+ ++LS F ++ A L L I++ D
Sbjct: 83 LELFIPSADGNVLEGISCSFQKLRSLTLHTNFYKASSILSTFGLLTRAPNLLHLEIEITD 142
Query: 131 DSTQDDEVDNDFLNGQWTDDLFSNLKSVYVRNMTCKLSEMHFIEFILSKARNLEKNDVCL 190
Q DEVD DFLN WT+ LF+NL V +++ TC +EM FIEF+LSKAR L + +
Sbjct: 143 HENQSDEVDIDFLNALWTNSLFANLDFVSIKSATCWSNEMRFIEFVLSKARLL--GEFYI 200
Query: 191 AED----CSKSNEEAVIELAK 207
D SK EEA+IELAK
Sbjct: 201 YHDDTGSYSKPREEAIIELAK 221
>Os08g0461700 Conserved hypothetical protein
Length = 256
Score = 122 bits (307), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 74/198 (37%), Positives = 111/198 (56%), Gaps = 3/198 (1%)
Query: 13 QWVIQAPNLQNFFITGLYDDGWQIGDLTFLEEATVDWPLYSYDRDFVKLITGLSQARELD 72
+WVI+APNL++ I YD W++ +L L+ ATV S DRDFV+L+T +Q L+
Sbjct: 39 EWVIRAPNLKHLTIESDYDYLWRVEELPSLQTATVKVDDDSTDRDFVQLLTCFAQVSMLE 98
Query: 73 FAMPVRDVNVLEGLSCSFKNXXXXXXXXXXXXXXNVLSFFCIIRNASKLETLRIKLFDDS 132
+ + N L+GLSCS + ++L F ++ + L I++
Sbjct: 99 LHLLATEDNALDGLSCSLEKLKSLTLHANFRSVSSILCIFSLLMRCPNIGVLDIEIMGSE 158
Query: 133 -TQDDEVDNDFLNGQWTDDLFSNLKSVYVRNMTCKLSEMHFIEFILSKARNLEKNDVCL- 190
Q+DE+D +F N T+DLF+NL + +RN C ++MHFIEF+LS+ R L K V
Sbjct: 159 FPQNDEIDAEFFNTLETNDLFTNLDDITLRNAPCLSNDMHFIEFVLSRVRLLSKFWVFRD 218
Query: 191 -AEDCSKSNEEAVIELAK 207
+ SK +EEAVIE+AK
Sbjct: 219 DSNSLSKPSEEAVIEIAK 236
>Os08g0461300 Cyclin-like F-box domain containing protein
Length = 432
Score = 108 bits (271), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/203 (33%), Positives = 110/203 (54%), Gaps = 9/203 (4%)
Query: 8 NGVYHQWVIQAPNLQNFFITGLYDDGWQIGDLTFLEEATVDWPLYSYDRDFVKLITGLSQ 67
+G WVI+A NL+ I + G ++ DL LEE + + ++ K +TG+++
Sbjct: 214 DGPDEDWVIRASNLRKLTIALGSEYGGRMEDLPRLEECCL------FGLNYAKYLTGMAR 267
Query: 68 ARELDF---AMPVRDVNVLEGLSCSFKNXXXXXXXXXXXXXXNVLSFFCIIRNASKLETL 124
+L F M +V+VLE L F+N ++L+ FC++R+A LE L
Sbjct: 268 VTKLTFYCNCMLSTEVDVLERLPFLFENLRSLILGVNFCMMSHILAIFCLLRSAPVLEEL 327
Query: 125 RIKLFDDSTQDDEVDNDFLNGQWTDDLFSNLKSVYVRNMTCKLSEMHFIEFILSKARNLE 184
+ + + Q+ E ++ FLN QW + +F+ L V ++ + C +EMHFIEFILSKAR L
Sbjct: 328 DVWNWSEGAQEMEANDVFLNAQWINHMFAKLHVVRMKKVYCLNNEMHFIEFILSKARVLR 387
Query: 185 KNDVCLAEDCSKSNEEAVIELAK 207
+ LA D S EEA+I++ +
Sbjct: 388 VLSLTLASDSLSSIEEAIIDITE 410
>Os09g0443000 Cyclin-like F-box domain containing protein
Length = 554
Score = 108 bits (269), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 70/200 (35%), Positives = 100/200 (50%), Gaps = 7/200 (3%)
Query: 14 WVIQAPNLQNFFITGLYDDGWQIGDLTFLEEATVDWPLYSYDRDFVKLITGLSQARELDF 73
WVI+APNLQ+ I D GW + DL L A +D Y RDF + + L R+L
Sbjct: 207 WVIRAPNLQHLTICSPNDYGWNLLDLPRLRSAVIDLWDYLGGRDFAEFLGKLLHVRKLHL 266
Query: 74 AM---PVRDVNVLEGLSCSFKNXXXXXXXXXXX---XXXNVLSFFCIIRNASKLETLRIK 127
+ P +LE L C+F + +L+ FC++RNA LE L+I
Sbjct: 267 FVSYQPSNGAKILETLPCTFDSLKSLKSLKLYMDFCELPAILTIFCLLRNAPNLEKLKI- 325
Query: 128 LFDDSTQDDEVDNDFLNGQWTDDLFSNLKSVYVRNMTCKLSEMHFIEFILSKARNLEKND 187
+ D+ Q E + F N +WT + +NL+ V + ++ +EM FIE ILSKA L
Sbjct: 326 MITDNEQKVEANGVFQNAEWTGGMCANLQIVQITRISWLPNEMSFIELILSKASLLRTIS 385
Query: 188 VCLAEDCSKSNEEAVIELAK 207
V + C SNE+A+ EL K
Sbjct: 386 VTHGDKCLMSNEDALSELLK 405
>Os08g0461100 Leucine-rich repeat 2 containing protein
Length = 671
Score = 100 bits (250), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 107/211 (50%), Gaps = 26/211 (12%)
Query: 13 QWVIQAPNLQNFFITGLYDDGWQIGDLTFLEEATVDWPLYSYDRDFVKLITGLSQARELD 72
+WVI+APNL+ + + G ++ +L LE+ + P ++ K +TG++ +L+
Sbjct: 286 EWVIRAPNLRKLIMVAAFPYGGRVEELPRLEQGILCGP------NYAKFLTGMAHVTKLE 339
Query: 73 FA---MPVRDVNVLEGLSCSFKNXXXXXXXXXXXXXXNVLSFFCIIRNASKLETLRIKLF 129
F M +V+VLE L F+N ++L FC++R+A LE L + +
Sbjct: 340 FMCHYMLSTEVDVLEQLPFLFENLRSLVISVNFCKMSHILFMFCLLRSAPVLEELDVVVM 399
Query: 130 -----------------DDSTQDDEVDNDFLNGQWTDDLFSNLKSVYVRNMTCKLSEMHF 172
+ QD + +++FLN Q T D+F+ L+ V ++ + C +EMHF
Sbjct: 400 LNDHLQIHYAITCFKGQSNDAQDIDANDEFLNAQPTYDMFAKLRVVRMKKVACLCNEMHF 459
Query: 173 IEFILSKARNLEKNDVCLAEDCSKSNEEAVI 203
+EF+L+KAR L V + + SNE+A I
Sbjct: 460 MEFVLNKARVLRVLSVYPSSGVTCSNEQAFI 490
>Os08g0460900 Cyclin-like F-box domain containing protein
Length = 584
Score = 99.4 bits (246), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 107/203 (52%), Gaps = 9/203 (4%)
Query: 8 NGVYHQWVIQAPNLQNFFITGLYDDGWQIGDLTFLEEATVDWPLYSYDRDFVKLITGLSQ 67
+G WVI+ NL+ I + G +I D+ LEE + P ++ K + ++
Sbjct: 188 DGPDEDWVIRGSNLRKLTIALGHKYGGRIEDIARLEECCLFGP------NYAKYLMRMAH 241
Query: 68 ARELDF---AMPVRDVNVLEGLSCSFKNXXXXXXXXXXXXXXNVLSFFCIIRNASKLETL 124
+L F ++ +V+VLE L F+N ++L+ FC++R+A LE L
Sbjct: 242 VTKLSFYCNSILSTEVDVLERLPFLFENLRSLVLGVNFCILSHILATFCLLRSAPVLEEL 301
Query: 125 RIKLFDDSTQDDEVDNDFLNGQWTDDLFSNLKSVYVRNMTCKLSEMHFIEFILSKARNLE 184
+ +F D TQ+ + D++F + QW + +F+ L V ++ ++C +EM IEFILSKAR L
Sbjct: 302 DVWVFSDGTQEMKTDDEFFDAQWVNHMFAKLHVVRMKKVSCLCNEMLLIEFILSKARALR 361
Query: 185 KNDVCLAEDCSKSNEEAVIELAK 207
+ LA + S EEA+ ++ +
Sbjct: 362 VLSLTLASNSQFSIEEAITDITE 384
>Os08g0462300 Cyclin-like F-box domain containing protein
Length = 418
Score = 87.8 bits (216), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 102/200 (51%), Gaps = 5/200 (2%)
Query: 11 YHQWVIQAPNLQNFFITGLYDDGWQIGDLTFLEEATVDWPLYSYDRDFVKLITGLSQARE 70
+ +W I+ PNL++ +I YD G +IG+L LE A V + K++ G+S A
Sbjct: 206 WERWFIRGPNLRSVWIWTDYDYGCRIGELPRLEHAIVFASAIKTE-VLCKILEGISHAET 264
Query: 71 LDFAMPVRDVN--VLEGLSCSFKNXXXXXXXXXXXXXXNVLSFFCIIRNASKLETLRIKL 128
L F N E S +F+N + FCI+R+A LETL I++
Sbjct: 265 LGFDAITDQFNGNPPERFSFTFQNLRSLDLHACLDQISSTSWVFCILRSAPNLETLEIEV 324
Query: 129 FDDSTQDDEVD-NDFLNGQWTDDLFSNLKSVYVRNMTCKLSEMHFIEFILSKARNLEKND 187
D + D F N Q +DD+F L+ V++ ++ C +EM FI+F+LSKAR+LE
Sbjct: 325 DCDDDEVDAGSVEGFANAQASDDIFPRLRDVWLHSIDCSSNEMCFIKFVLSKARSLELFS 384
Query: 188 VCLAEDCSKSNEEAVIELAK 207
V + S +EA IE+AK
Sbjct: 385 VRVTSS-RLSYQEACIEMAK 403
>Os08g0267800 Cyclin-like F-box domain containing protein
Length = 463
Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 98/210 (46%), Gaps = 29/210 (13%)
Query: 8 NGVYHQWVIQAPNLQNFFITGLY--DDGWQIG-DLTFLEEATVDWPLYSYDRDFVKLITG 64
G W I+AP L+ +IT D+G +I L LEE T+ + +DF+
Sbjct: 214 GGGVDTWAIRAPKLRKLYITMEMGDDNGCRIPMPLPMLEEVTISFDRLFGTQDFLDAFQN 273
Query: 65 LSQARELDFAMPVRDVNVLEGLSCSFKNXXXXXXXXXXXXXXNVLSFFCIIRNASKLETL 124
+S +L F ++N+LEG++C F+N +VLS +++ A +E L
Sbjct: 274 ISTVNKLFFKSDKFNINMLEGITCKFENLREGGLIIDFGQRSSVLSLVSLLKFAPHIEHL 333
Query: 125 RIKL------------------------FDDST--QDDEVDNDFLNGQWTDDLFSNLKSV 158
I+ FD+ + DE+D D LN + + DL ++LK V
Sbjct: 334 YIRTDHSILDPVSSEDEMDEDSLNSEDEFDEDSLNSQDEIDEDSLNSEISSDLLASLKYV 393
Query: 159 YVRNMTCKLSEMHFIEFILSKARNLEKNDV 188
+ NM ++M F++ +LSKAR+L+ DV
Sbjct: 394 TLINMKYNSNQMCFMKLLLSKARSLQTFDV 423
>Os08g0267000 Cyclin-like F-box domain containing protein
Length = 439
Score = 67.4 bits (163), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 99/197 (50%), Gaps = 10/197 (5%)
Query: 12 HQWVIQAPNLQNFFITGLYDDGWQIGD-LTFLEEATVDWPLYSYDRDFVKLITGLSQARE 70
++W ++AP L+ + D G +I + LEEA +D + + F ++ G+ R+
Sbjct: 207 YKWAVRAPRLRVLKMATRLDIGCRIPEEPPLLEEAYID--IGNSFMSFHEIFRGIITVRK 264
Query: 71 LDFAMPVRDVNVLEGLSCSFKNXXXXXXXXXXXXXXNVLSFFCIIRNASKLETLRIKLFD 130
L F + + LEG+SC F N + +S F ++R A +E L I+ D
Sbjct: 265 LWFNIHEFNEYPLEGISCKFDNLREVHVTTNFGQQPSTMSLFSLLRCAPYIEDLSIEAED 324
Query: 131 DS--TQDDEVD---NDFLNGQWTDDLFSNLKSVYVRNMTCKLSEMHFIEFILSKARNLEK 185
S +DD + +DF++ ++ FS+LK V + +T +++ F++F+LSK +L+
Sbjct: 325 ISFSHRDDPYEIEEDDFISSGINENSFSSLKYVSLSGITYSSNQLRFMKFLLSKTESLQS 384
Query: 186 NDVCLAEDCSKSNEEAV 202
V SKSN+E V
Sbjct: 385 FAVTFLY--SKSNKEYV 399
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.138 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,965,183
Number of extensions: 211246
Number of successful extensions: 483
Number of sequences better than 1.0e-10: 11
Number of HSP's gapped: 466
Number of HSP's successfully gapped: 11
Length of query: 207
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 111
Effective length of database: 12,023,257
Effective search space: 1334581527
Effective search space used: 1334581527
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 153 (63.5 bits)