Os08g0461300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cyclin-like F-box domain containing protein.
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Os08g0461300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cyclin-like F-box domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 93.51 | 0.454 | 5.87 | 1.8 | 0.677 | 1.46 | 0.846 | -1.69 | 0.37 | 15.9 | 25.4 | 925 | -- | -- |
| 96.96 | 0.459 | 5.92 | 1.35 | 0.685 | 1.35 | 0.657 | -- | 0.207 | 16 | 25.59 | 905 | -- | -- |
| 95.5 | 0.455 | 5.87 | 1.83 | 0.663 | 1.49 | -- | -1.69 | 0.373 | 15.9 | 25.5 | 934 | -- | -- |
| 98.38 | 0.462 | 5.93 | 1.33 | 0.699 | 1.36 | -- | -- | 0.204 | 15.9 | 25.52 | 915 | -- | -- |
| 114.66 | 0.499 | 5.84 | 1.92 | -- | 1.74 | -- | -1.94 | 0.451 | -- | 25.52 | 1044 | -- | -- |
| 151.42 | 0.577 | 6.02 | 0.928 | 0.952 | -- | 0.49 | -- | -0.274 | 13.8 | -- | -- | -- | -- |
| 152.36 | 0.578 | 6.02 | 0.943 | 0.951 | -- | -- | -- | -0.271 | 13.8 | -- | -- | -- | -- |
| 118.8 | 0.508 | 5.9 | 1.38 | -- | 1.62 | -- | -- | 0.275 | -- | 25.5 | 1045 | -- | -- |
| 141.97 | 0.555 | 5.98 | -- | 0.742 | 1.04 | -- | -- | -0.0277 | 15.4 | 25.43 | 889 | -- | -- |
| 207.34 | 0.673 | 6.03 | 0.905 | -- | -- | -- | -- | -0.293 | -- | -- | -- | -- | -- |
| 175.82 | 0.62 | 6.04 | -- | 0.934 | -- | -- | -- | -0.376 | 13.7 | -- | -- | -- | -- |
| 165.94 | 0.6 | 5.96 | -- | -- | 1.31 | -- | -- | 0.0219 | -- | 25.58 | 1024 | -- | -- |
| 228.92 | 0.706 | 6.05 | -- | -- | -- | -- | -- | -0.393 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 83.14 | temperature | 20 | 720 | > th | dose dependent | rect. | 15 | 12 |
| 4 | 85.07 | temperature | 20 | 720 | > th | dose dependent | sin | 15 | NA |
| 51 | 89.12 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 10 |
| 61 | 89.50 | temperature | 30 | 720 | < th | dose dependent | sin | 16 | NA |
| 67 | 89.62 | temperature | 30 | 720 | < th | dose dependent | rect. | 16 | 7 |
| 83 | 90.16 | temperature | 25 | 720 | < th | dose independent | sin | 17 | NA |
| 108 | 90.85 | temperature | 25 | 720 | < th | dose independent | rect. | 13 | 12 |
| 120 | 91.02 | temperature | 25 | 720 | > th | dose independent | sin | 17 | NA |
| 122 | 91.07 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 9 |
| 135 | 91.37 | temperature | 25 | 720 | < th | dose independent | rect. | 11 | 14 |
| 152 | 91.71 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 11 |
| 229 | 93.13 | temperature | 25 | 720 | > th | dose independent | rect. | 11 | 15 |
| 237 | 93.25 | temperature | 30 | 270 | < th | dose dependent | rect. | 17 | 15 |
| 244 | 93.37 | temperature | 25 | 720 | < th | dose independent | rect. | 11 | 20 |
| 340 | 94.63 | temperature | 30 | 270 | < th | dose dependent | rect. | 12 | 21 |
| 349 | 94.71 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 17 |
| 361 | 94.81 | temperature | 30 | 270 | < th | dose dependent | sin | 12 | NA |
| 422 | 95.42 | temperature | 25 | 720 | > th | dose independent | rect. | 11 | 21 |
| 644 | 97.91 | temperature | 25 | 720 | < th | dose independent | rect. | 3 | 22 |
| 662 | 98.12 | temperature | 25 | 720 | < th | dose independent | rect. | 5 | 21 |
| 745 | 98.76 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 22 |
| 811 | 99.29 | temperature | 25 | 720 | < th | dose independent | rect. | 1 | 23 |
| 945 | 100.26 | temperature | 25 | 720 | < th | dose independent | no | NA | NA |
| 950 | 100.27 | temperature | 25 | 720 | > th | dose independent | rect. | 1 | 23 |
| 956 | 100.30 | temperature | 25 | 720 | > th | dose independent | no | NA | NA |