BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0461300 Os08g0461300|AK065651
         (432 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G13570.1  | chr1:4642528-4643930 REVERSE LENGTH=417             79   4e-15

>AT1G13570.1 | chr1:4642528-4643930 REVERSE LENGTH=417
          Length = 416

 Score = 79.3 bits (194), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 104/433 (24%), Positives = 176/433 (40%), Gaps = 48/433 (11%)

Query: 20  VGPAPDALGSLPLDVLDSILSRLHIHDVVRTSALXXXXXXXXESLPTVDLTRSPGISASD 79
           +G +PD +  LP  ++++IL+RL I D +RTS L         +L  +         ++D
Sbjct: 1   MGESPDFISDLPQSIIENILTRLSIRDAIRTSVLSSKWRYKWSTLTDLVFDEKCVSPSND 60

Query: 80  -----------VDALLLRRTAPARSFRLATRDRSWSPTAFHDWXXXXXXXXXXXXXXXXX 128
                      +  +LL    P   F+L+T  +   P     W                 
Sbjct: 61  RCVVETNLVRFITGVLLLHQGPIHKFQLSTSFKQCRPD-IDQWLLFLSRNGIKELVLKLG 119

Query: 129 XXXXYTYINSKLNSCLFSFRELTSLRL-HCCGLPHVPTEFAGFPNLKTMYLSVVKVQRHG 187
                     ++ +CLF+  +LT L L HC   P  P  F GF  LK++ L  + V    
Sbjct: 120 EG------EFRVPACLFNCLKLTCLELCHCEFDP--PQYFKGFSYLKSLNLHQILV---A 168

Query: 188 GRGLATLIAASPVLQEVTL--IDVVLIG-----------DGPDEDWVIRASNLRKLTIAL 234
              + +LI+  P+L+ ++L   D +++            DG  +D  I   N  KL    
Sbjct: 169 PEVIESLISGCPLLEFLSLSYFDSLVLSISAPNLMYLYLDGEFKD--IFLENTPKLVAIS 226

Query: 235 GSEYGGRMEDLPRLEECCLFGLNYAKYLTGMARVTKLTFYCNCMLSTEV-DVLERLPFLF 293
            S Y    ED+   E+   +  N  K+L G+  + KL  Y        + D   RLP  +
Sbjct: 227 VSMY--MHEDVTDFEQSSDY--NLVKFLGGVPLLEKLVGYIYFTKYLSIGDDPGRLPLTY 282

Query: 294 ENLRSL-ILGVNFCMMSHILAIFCLLRSAPVLEELDVWN--WSEGAQEMEANDVFLNAQW 350
            +L+++ +  V F     +L +  L+  +P L+EL V          E E  D+F    +
Sbjct: 283 IHLKTIELYQVCFEDADEVLVLLRLVTHSPNLKELKVSASPVQPFPLEEEGFDLF-ERDY 341

Query: 351 INHMFAKLHVVRMKKVYCLNNEMHFIEFILSKARVLRVXXXXXXXXXXXXIEEAIIDITE 410
            ++    L  V++     +  E+ FI F+L  + VL                + +I++  
Sbjct: 342 FDYKLPSLESVKITDASGIRYELEFIRFLLGTSPVLETVTVSSSLSDKDAKMDMVIELLR 401

Query: 411 YPRASPDAQVIFM 423
           YPR SP AQ++F+
Sbjct: 402 YPRVSPRAQLLFL 414



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.324    0.138    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,961,891
Number of extensions: 297074
Number of successful extensions: 1083
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1093
Number of HSP's successfully gapped: 1
Length of query: 432
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 331
Effective length of database: 8,337,553
Effective search space: 2759730043
Effective search space used: 2759730043
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 113 (48.1 bits)