BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0461000 Os08g0461000|AK106852
(279 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0461000 Cyclin-like F-box domain containing protein 503 e-143
Os08g0460800 Cyclin-like F-box domain containing protein 172 3e-43
Os08g0460700 Leucine-rich repeat 2 containing protein 132 4e-31
Os09g0443000 Cyclin-like F-box domain containing protein 131 6e-31
Os08g0462300 Cyclin-like F-box domain containing protein 127 6e-30
Os08g0461300 Cyclin-like F-box domain containing protein 127 1e-29
Os08g0460900 Cyclin-like F-box domain containing protein 124 5e-29
Os08g0461700 Conserved hypothetical protein 123 2e-28
Os08g0462200 122 3e-28
Os08g0267800 Cyclin-like F-box domain containing protein 118 4e-27
Os08g0461100 Leucine-rich repeat 2 containing protein 109 2e-24
Os08g0267000 Cyclin-like F-box domain containing protein 106 2e-23
Os08g0266900 92 5e-19
Os09g0443100 83 2e-16
Os08g0461800 Conserved hypothetical protein 82 5e-16
Os08g0268200 80 2e-15
Os08g0267700 75 6e-14
Os01g0596300 Cyclin-like F-box domain containing protein 68 9e-12
>Os08g0461000 Cyclin-like F-box domain containing protein
Length = 279
Score = 503 bits (1296), Expect = e-143, Method: Compositional matrix adjust.
Identities = 249/263 (94%), Positives = 249/263 (94%)
Query: 17 AAPQQPKPSLNSLPSEILENIVGRLPVRQAVRTSALSRDWRRRWESSPGIRFXXXXXXXX 76
AAPQQPKPSLNSLPSEILENIVGRLPVRQAVRTSALSRDWRRRWESSPGIRF
Sbjct: 17 AAPQQPKPSLNSLPSEILENIVGRLPVRQAVRTSALSRDWRRRWESSPGIRFGWGSGEAG 76
Query: 77 XXXXXXQILARYACPVRHFRHGWIESGGSARADEWFVVLAGRGVEHLALIFSEADNFLFH 136
QILARYACPVRHFRHGWIESGGSARADEWFVVLAGRGVEHLALIFSEADNFLFH
Sbjct: 77 AAAAVGQILARYACPVRHFRHGWIESGGSARADEWFVVLAGRGVEHLALIFSEADNFLFH 136
Query: 137 TLHAAIFSCRELTKLELGSCRLPAAPSDFSGFPNLTVLTLTMVAFPPHGERTLEAMISSA 196
TLHAAIFSCRELTKLELGSCRLPAAPSDFSGFPNLTVLTLTMVAFPPHGERTLEAMISSA
Sbjct: 137 TLHAAIFSCRELTKLELGSCRLPAAPSDFSGFPNLTVLTLTMVAFPPHGERTLEAMISSA 196
Query: 197 PLLQSLELKNVSMEGGEWDEWVIRAPNLKDLIIQLEFDFLWEIEQLPSIQTATISVDNES 256
PLLQSLELKNVSMEGGEWDEWVIRAPNLKDLIIQLEFDFLWEIEQLPSIQTATISVDNES
Sbjct: 197 PLLQSLELKNVSMEGGEWDEWVIRAPNLKDLIIQLEFDFLWEIEQLPSIQTATISVDNES 256
Query: 257 TDRDFVQLLTCFARPSYTGYRSG 279
TDRDFVQLLTCFARPSYTGYRSG
Sbjct: 257 TDRDFVQLLTCFARPSYTGYRSG 279
>Os08g0460800 Cyclin-like F-box domain containing protein
Length = 372
Score = 172 bits (435), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 98/234 (41%), Positives = 131/234 (55%), Gaps = 7/234 (2%)
Query: 22 PKPSLNSLPSEILENIVGRLPVRQAVRTSALSRDWRRRWESSPGIRFXXXXXXXXXXXXX 81
P +L +LP E+L+NI+GRL + VRTSALSR WRRRWES P +
Sbjct: 25 PPDALGALPVEVLDNILGRLHIYDVVRTSALSRAWRRRWESLPTVDLTRSPGVAASDVDA 84
Query: 82 XQILARYACPVRHFRHGWIESGGSARA-DEWFVVLAGRGVEHLALIFSEADNFLFHTLHA 140
+L R + PVR FR + A +W + L+ GV+ L L F LH+
Sbjct: 85 --VLLRRSAPVRAFRLAARDPSWFVDALHDWLLYLSRSGVQALYLWFPTPS----FRLHS 138
Query: 141 AIFSCRELTKLELGSCRLPAAPSDFSGFPNLTVLTLTMVAFPPHGERTLEAMISSAPLLQ 200
+FSCRELT L+L CRLP APS F GF NL L LT V+ P HG++ L A+ + +PLL+
Sbjct: 139 CLFSCRELTSLDLEGCRLPPAPSGFEGFQNLKKLHLTKVSLPEHGDKALAALFAGSPLLE 198
Query: 201 SLELKNVSMEGGEWDEWVIRAPNLKDLIIQLEFDFLWEIEQLPSIQTATISVDN 254
+EL N + G DEWVIRAPNL+ LI+ F + +E LP ++ + N
Sbjct: 199 DVELMNALLVGDGADEWVIRAPNLRKLIMVAPFPYAGRVEDLPRLEEGILCGPN 252
>Os08g0460700 Leucine-rich repeat 2 containing protein
Length = 297
Score = 132 bits (331), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 84/212 (39%), Positives = 111/212 (52%), Gaps = 10/212 (4%)
Query: 43 VRQAVRTSALSRDWRRRWESSPGIRFXXXXXXXXXXXXXXQILARYACPVRHFRHGWIES 102
+ + VRTSALSR WRRRW + P + IL R +R FR
Sbjct: 39 IYEVVRTSALSRAWRRRWAALPSVDLARSPGISEPDVD--AILLRRPAALRTFRLVARAR 96
Query: 103 GGSARAD---EWFVVLAGRGVEHLALIFSEADNFLFHTLHAAIFSCRELTKLELGSCRLP 159
G+ D W + L+ GV+ L L F E L LH +FSC E T L L SCRLP
Sbjct: 97 KGTWSVDALHHWLLYLSRSGVQALDLSFPE----LRFRLHPCLFSCGEFTSLALNSCRLP 152
Query: 160 AAPSDFSGFPNLTVLTLTMVAFPPHGERTLEAMISSAPLLQSLELKNVSMEG-GEWDEWV 218
APS F+GFPN+ L L V P HG + + A+I+++PLL+ L L V + G G +EWV
Sbjct: 153 PAPSGFAGFPNIKTLRLEDVDVPRHGGKEVAALIAASPLLEDLGLLAVKLIGDGPDEEWV 212
Query: 219 IRAPNLKDLIIQLEFDFLWEIEQLPSIQTATI 250
IRAPNL++L + E F +E LP + +
Sbjct: 213 IRAPNLRNLTMVCETAFGGRVEDLPRLDEGRL 244
>Os09g0443000 Cyclin-like F-box domain containing protein
Length = 554
Score = 131 bits (329), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 89/248 (35%), Positives = 129/248 (52%), Gaps = 21/248 (8%)
Query: 20 QQPKPSLNSLPSEILENIVGRLPVRQAVRTSALSRDWRRRWESSPGIRFXXXXXXXXXXX 79
++ K +L SLP ++L+ ++ RL +R AVRTSALS
Sbjct: 27 EEAKDALISLPPDVLDGVLTRLGLRDAVRTSALS---------------RAWRRRRARRW 71
Query: 80 XXXQILARYACP--VRHFRHGWIESGGSARADEWFVVLAGRGVEHLALIFSEADNFLFHT 137
+ ACP VR F +++ + RA +W +VLA RGVE L L S N L
Sbjct: 72 PPSTASSSAACPGRVRSF-SAYVDKLTTRRAHDWILVLARRGVESLDLA-SPIHNHL--A 127
Query: 138 LHAAIFSCRELTKLELGSCRLPAAPSDFSGFPNLTVLTLTMVAFPPHGERTLEAMISSAP 197
+H+++FSC L L L +C +P P F+GFPNL LTL V GE LE +I ++P
Sbjct: 128 VHSSVFSCDRLAYLNLFACDIPPLPPGFAGFPNLRSLTLDHVWLRAGGEYQLEEIIENSP 187
Query: 198 LLQSLELKNVSMEGGEWDEWVIRAPNLKDLIIQLEFDFLWEIEQLPSIQTATISVDNEST 257
LL+ L L + ++G + WVIRAPNL+ L I D+ W + LP +++A I + +
Sbjct: 188 LLEMLVLSGIFIDGDDIINWVIRAPNLQHLTICSPNDYGWNLLDLPRLRSAVIDLWDYLG 247
Query: 258 DRDFVQLL 265
RDF + L
Sbjct: 248 GRDFAEFL 255
>Os08g0462300 Cyclin-like F-box domain containing protein
Length = 418
Score = 127 bits (320), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 91/231 (39%), Positives = 120/231 (51%), Gaps = 15/231 (6%)
Query: 26 LNSLPSEILENIVGRLPVRQAVRTSALSRDWRRRWESSPGIRFXXXXXXXXXXXXXXQIL 85
L LP EI+++I+ RL +R VRTSALSR WRRRWES G+ +L
Sbjct: 21 LAGLPPEIVDDIISRLDIRDVVRTSALSRAWRRRWESVRGLDL--SFRSSAPAAAISSVL 78
Query: 86 ARYACPVRHFRHGWIESGGS-ARADEWFVVLAGRGVEHLALIFSEADNFLFH---TLHAA 141
R A PVR G G RA W +L + V+ L L F F+F +L +
Sbjct: 79 KRAAAPVRGL--GLRVPGRRFRRAVHWLRLLPRKRVQSLDLHF----EFVFGEKPSLDPS 132
Query: 142 IFSCRELTKLELGSC--RLPAAPSDFSGFPNLTVLTLTMVAFPPHGERTLEAMISSAPLL 199
I SC ELT L L C P F GFP LT L+L+ + P HG R LEAMI+++PLL
Sbjct: 133 ILSCLELTTLVLEGCIFPPSPPPPSFVGFPELTKLSLSEIDLPRHGGRRLEAMIAASPLL 192
Query: 200 QSLELKNVSMEGGEWDEWVIRAPNLKDLIIQLEFDFLWEIEQLPSIQTATI 250
L L NV W+ W IR PNL+ + I ++D+ I +LP ++ A +
Sbjct: 193 VELSLSNVR-SLHHWERWFIRGPNLRSVWIWTDYDYGCRIGELPRLEHAIV 242
>Os08g0461300 Cyclin-like F-box domain containing protein
Length = 432
Score = 127 bits (318), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 84/234 (35%), Positives = 123/234 (52%), Gaps = 7/234 (2%)
Query: 22 PKP-SLNSLPSEILENIVGRLPVRQAVRTSALSRDWRRRWESSPGIRFXXXXXXXXXXXX 80
P P +L SLP ++L++I+ RL + VRTSALSR WRRRWES P +
Sbjct: 22 PAPDALGSLPLDVLDSILSRLHIHDVVRTSALSRSWRRRWESLPTVDLTRSPGISASDVD 81
Query: 81 XXQILARYACPVRHFRHGWIESGGSARA-DEWFVVLAGRGVEHLALIFSEADNFLF--HT 137
+L R P R FR + S A +W + L+ G + +
Sbjct: 82 A--LLLRRTAPARSFRLATRDRSWSPTAFHDWLLRLSRGGGGGGLRDLELTLRYTYINSK 139
Query: 138 LHAAIFSCRELTKLELGSCRLPAAPSDFSGFPNLTVLTLTMVAFPPHGERTLEAMISSAP 197
L++ +FS RELT L L C LP P++F+GFPNL + L++V HG R L +I+++P
Sbjct: 140 LNSCLFSFRELTSLRLHCCGLPHVPTEFAGFPNLKTMYLSVVKVQRHGGRGLATLIAASP 199
Query: 198 LLQSLELKNVSMEGGEWDE-WVIRAPNLKDLIIQLEFDFLWEIEQLPSIQTATI 250
+LQ + L +V + G DE WVIRA NL+ L I L ++ +E LP ++ +
Sbjct: 200 VLQEVTLIDVVLIGDGPDEDWVIRASNLRKLTIALGSEYGGRMEDLPRLEECCL 253
>Os08g0460900 Cyclin-like F-box domain containing protein
Length = 584
Score = 124 bits (312), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 79/227 (34%), Positives = 116/227 (51%), Gaps = 3/227 (1%)
Query: 25 SLNSLPSEILENIVGRLPVRQAVRTSALSRDWRRRWESSPGIRFXXXXXXXXXXXXXXQI 84
+L SLP ++L+NI+ RL + VRTSALSR WRRRWES P + +
Sbjct: 3 ALGSLPLDVLDNILSRLHIHDVVRTSALSRAWRRRWESLPTVGLLNSPGIGASDVDA--L 60
Query: 85 LARYACPVRHFRHGWIESGGSARADEWFVVLAGRGVEHLALIFSEADNFLFHTLHAAIFS 144
L R PVR FR + S A +++ L + F++ L++ +FS
Sbjct: 61 LLRRTAPVRSFRLATRDRSWSPTAFHDWLLHLHLRGGLRDLELTLRYEFMYQKLNSCLFS 120
Query: 145 CRELTKLELGSCRLPAAPSDFSGFPNLTVLTLTMVAFPPHGERTLEAMISSAPLLQSLEL 204
RELT L+L C LP P++F+GFPNL L +MV G R + +I+++P+LQ L
Sbjct: 121 FRELTSLKLYCCGLPNLPAEFAGFPNLKTLHFSMVQAQSPGGRGIATLIAASPVLQEASL 180
Query: 205 KNVSMEGGEWDE-WVIRAPNLKDLIIQLEFDFLWEIEQLPSIQTATI 250
+ + G DE WVIR NL+ L I L + IE + ++ +
Sbjct: 181 IDGKLIGDGPDEDWVIRGSNLRKLTIALGHKYGGRIEDIARLEECCL 227
>Os08g0461700 Conserved hypothetical protein
Length = 256
Score = 123 bits (308), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 60/95 (63%), Positives = 78/95 (82%)
Query: 178 MVAFPPHGERTLEAMISSAPLLQSLELKNVSMEGGEWDEWVIRAPNLKDLIIQLEFDFLW 237
MV P HGE TLEAMIS + LL+ L+L++V +G + DEWVIRAPNLK L I+ ++D+LW
Sbjct: 1 MVNLPEHGESTLEAMISLSLLLEWLDLRSVCTDGNQMDEWVIRAPNLKHLTIESDYDYLW 60
Query: 238 EIEQLPSIQTATISVDNESTDRDFVQLLTCFARPS 272
+E+LPS+QTAT+ VD++STDRDFVQLLTCFA+ S
Sbjct: 61 RVEELPSLQTATVKVDDDSTDRDFVQLLTCFAQVS 95
>Os08g0462200
Length = 358
Score = 122 bits (306), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 99/253 (39%), Positives = 129/253 (50%), Gaps = 19/253 (7%)
Query: 26 LNSLPSEILENIVGRLPVRQAVRTSALSRDWRRRWESSPGIRFXXXXXXXXXXXXXXQIL 85
L +LP EI++NI+ RL VR VRTS LS WRRRW S G+ +L
Sbjct: 19 LAALPPEIVDNIISRLGVRDVVRTSVLSHAWRRRWRSVRGLDLDFRSSDPAAAIS--SVL 76
Query: 86 ARYACPVR----HFRHGWIESGGSARADEWFVVLAGRGVEHLALIFSEADNFL--FHTLH 139
R A PVR W RA W +L + V+ L L F E + + H L
Sbjct: 77 KRSAAPVRTVTLRVPRRWFH-----RAVRWLRLLPRKRVQSLHLYF-EMISIIEGKHNLD 130
Query: 140 AAIFSCRELTKLELGSCRLPA-APSDFSGFPNLTVLTLTMVAFPPHGERTLEAMISSAPL 198
+IFSC EL+ L L C P P F GF LT L+L+ V PPHGER LEAMI+++PL
Sbjct: 131 PSIFSCLELSSLSLAGCTFPPPQPPSFVGFLKLTKLSLSEVELPPHGERQLEAMIAASPL 190
Query: 199 LQSLELKNV-SMEGGEWDEWVIRAPNLKDLII-QLEFDFLWEIEQLPSIQTATISVDNES 256
L L L NV S E W +R PN++ L I ++ DF I +LP ++ A I +D+E
Sbjct: 191 LLELSLDNVHSFHHSEV--WFVRGPNIRSLRIWAVDQDFGCRIGELPRLEDAVIFLDSEV 248
Query: 257 TDRDFVQLLTCFA 269
T + + L A
Sbjct: 249 TTQVLCKTLEGIA 261
>Os08g0267800 Cyclin-like F-box domain containing protein
Length = 463
Score = 118 bits (296), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 98/255 (38%), Positives = 126/255 (49%), Gaps = 14/255 (5%)
Query: 17 AAPQQPKPS--LNSLPSEILEN-IVGRLPVRQAVRTSALSRDWRRRWESSPGIRFXXXXX 73
AP P+ + L +LP +IL++ I+ LP + VRTS LSR WRRRWES +
Sbjct: 21 VAPPPPRRTDMLMALPPDILDDRILALLPFDKLVRTSCLSRAWRRRWESVRNLEIELPRA 80
Query: 74 XXXXXXXXXQILARYACPVRHFRHGWIESGGSARADEWFVVLAGRGVEHLALIFSEADNF 133
+ L R A PVR F + RA W LA +GV+ L+L FS A
Sbjct: 81 YSGGG----RALWRCARPVRFF-SARVARRDVFRAARWLRALARKGVQDLSLEFSLAGK- 134
Query: 134 LFHTLHAAIFSCRELTKLELGSCRLPAAPSDFSGFPNLTVLTLTMVAFPPHGERT-LEAM 192
A+FSC L +L+L C +PAAP F GFPNL L L V P G T LE +
Sbjct: 135 QRPLPGPALFSCAALVQLDLEQCDMPAAPPGFLGFPNLERLDLVYVTLPFAGAGTQLEHL 194
Query: 193 ISSAPLLQSLELKNV-SMEGGEWDEWVIRAPNLKDLIIQLEF--DFLWEIEQ-LPSIQTA 248
I +A L L L V ++ GG D W IRAP L+ L I +E D I LP ++
Sbjct: 195 IVAAEKLAVLNLSPVITINGGGVDTWAIRAPKLRKLYITMEMGDDNGCRIPMPLPMLEEV 254
Query: 249 TISVDNESTDRDFVQ 263
TIS D +DF+
Sbjct: 255 TISFDRLFGTQDFLD 269
>Os08g0461100 Leucine-rich repeat 2 containing protein
Length = 671
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 72/170 (42%), Positives = 95/170 (55%), Gaps = 10/170 (5%)
Query: 89 ACPVRHFRHGWIESGGSARAD---EWFVVLAGRGVEHLALIFSEADNFLFHTLHAAIFSC 145
A PVR FR + S D +W + L+ GV+ L L F NF LH+ +FSC
Sbjct: 161 AAPVRAFR--LVARDPSWFVDALHDWLLHLSRNGVQALELWFPTY-NF---QLHSCLFSC 214
Query: 146 RELTKLELGSCRLPAAPSDFSGFPNLTVLTLTMVAFPPHGERTLEAMISSAPLLQSLELK 205
REL L+L SCRLP A F GFPNL L L V P H L A+IS++PLL+ +EL
Sbjct: 215 RELACLDLDSCRLPPARMGFEGFPNLKKLRLHEVTLPEHMGNMLAALISASPLLEEVELV 274
Query: 206 NVSMEGGEWD-EWVIRAPNLKDLIIQLEFDFLWEIEQLPSIQTATISVDN 254
+V + G D EWVIRAPNL+ LI+ F + +E+LP ++ + N
Sbjct: 275 SVFLVGDYPDEEWVIRAPNLRKLIMVAAFPYGGRVEELPRLEQGILCGPN 324
>Os08g0267000 Cyclin-like F-box domain containing protein
Length = 439
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 81/242 (33%), Positives = 114/242 (47%), Gaps = 17/242 (7%)
Query: 26 LNSLPSEILENIVGRLPVRQAVRTSALSRDWRRRWESSPGIRFXXXXXX-XXXXXXXXQI 84
L SLP+++L+ I+ R+P VRT LS WRRRWES +R+ +
Sbjct: 10 LMSLPTDVLDIILARIPFDLLVRTCCLSHAWRRRWES---VRYLDIRLGWGCRGAPSARD 66
Query: 85 LARYACPVRHFRHGWIESGGSARADEWFVVLAGRGVEHLALIFS-----EADNFLFHTLH 139
L R A PV FR + + WF LA +GV LA+ D + +
Sbjct: 67 LWRCAAPVVGFR-ACVHARHFHHLPTWFPALASKGVRELAIECDGVRRGHPDTPPYWVID 125
Query: 140 AAIFSCRELTKLELGSCRLPAAPSDFSGFPNLTVLTLTMVAFPPHGERT-LEAMISSAPL 198
+FSC L L L C +P AP F GFP+L LTL V P G +E ++++APL
Sbjct: 126 QGLFSCAALAVLHLEDCDMPLAPPGFRGFPSLVSLTLRGVTLPAEGGGARVEHLVAAAPL 185
Query: 199 LQSLELKNVSMEGGE-----WDEWVIRAPNLKDLIIQLEFDFLWEI-EQLPSIQTATISV 252
L L L +V +E E +W +RAP L+ L + D I E+ P ++ A I +
Sbjct: 186 LAELRLDDVDVEELEDPTPPLYKWAVRAPRLRVLKMATRLDIGCRIPEEPPLLEEAYIDI 245
Query: 253 DN 254
N
Sbjct: 246 GN 247
>Os08g0266900
Length = 368
Score = 91.7 bits (226), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 97/270 (35%), Positives = 125/270 (46%), Gaps = 30/270 (11%)
Query: 26 LNSLPSEILENIVGRLPVRQAVRTSALSRDWRRRWESSPG--IRFXXXXXXXXXXXXXXQ 83
L SL EIL++I+ RLP+++ VRT LSR W RRWES+ G +RF
Sbjct: 30 LLSLLPEILDDILTRLPLKEVVRTCCLSRGWARRWESASGLDVRF----RGFYSAGAVAG 85
Query: 84 ILARYACPVRHFRHGWIESGGSARADEWFVVLAGRGVEHLALIF--SEADN-FLFHTLHA 140
+LAR A PV F + RA W LA + V L L F S AD +F +
Sbjct: 86 VLARCAAPVASFDIE-VRPRLRPRAAYWLRALAEKRVRSLQLAFGSSRADEPGVFPGVGR 144
Query: 141 AIFSCRELTKLELGSCRL-------PAAPSDFSGFPNLTVLTLTMVAFPPHGERT-LEAM 192
AI++ EL+ L L C L P S F+GFP LT L L V P G LE +
Sbjct: 145 AIYARAELSNLYLRYCELPRPPPPQPGQGSLFAGFPRLTRLALNSVKLPFAGAGALLERV 204
Query: 193 ISSAPLLQSLELKNV---SMEGG-------EWDEWVIRAPNLKDLIIQL-EFDFLWEIE- 240
I+ AP L L L +V + GG E + W IRAP L L + D +
Sbjct: 205 IAGAPDLADLLLVDVITGVVAGGEKKVEEEEPEAWAIRAPKLHSLTLWTPAVDNGCRVAG 264
Query: 241 QLPSIQTATISVDNESTDRDFVQLLTCFAR 270
+LP + A ISVD DF+ L +R
Sbjct: 265 ELPLLNAANISVDAFLGTEDFLDTLWLVSR 294
>Os09g0443100
Length = 412
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 90/196 (45%), Gaps = 17/196 (8%)
Query: 29 LPSEILENIVGRLPVRQAVRTSALSRDWRRRWESSPGIRFXXXXXXXXXXXXXXQILARY 88
LP E+ + I+ RLP+R A R+S LS W R W + F A
Sbjct: 10 LPWELQDAILARLPLRDAARSSVLSSSWGRSWRHLGELDFVSSPPPAAASLPVAAATA-V 68
Query: 89 ACP-------VRHFRHGWIESGGSARADE-------WFVVLAGRGVEHLALIFSEADNFL 134
AC + H G ++ DE W L+ +G++ L L
Sbjct: 69 ACDKAAIDAILLHQHPGPVQRVRLRVTDELLPGVPAWMASLSEKGIQSLDLTVRAMYRPP 128
Query: 135 FHTLHAAIFSCRELTKLELGSCRLPAAPSDFSGFPNLTVLTLTMVAFPPHGERTLEAMIS 194
H +H +IF+CR L +L LG LPAAP F+GFP L L+LT AF R LEA+++
Sbjct: 129 PHPMHRSIFACRALRRLSLGRFALPAAPEHFAGFPALATLSLTGTAF--RNARDLEALVA 186
Query: 195 SAPLLQSLELKNVSME 210
+P L+ L + ++++
Sbjct: 187 MSPRLEELRMCCIAVD 202
>Os08g0461800 Conserved hypothetical protein
Length = 243
Score = 81.6 bits (200), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 57/79 (72%)
Query: 192 MISSAPLLQSLELKNVSMEGGEWDEWVIRAPNLKDLIIQLEFDFLWEIEQLPSIQTATIS 251
MI +P L SLEL NV + ++++W+I+APNL+ L I + D+ W+I+ LPSIQ A I+
Sbjct: 1 MIRMSPSLVSLELSNVEVTDDDFEDWIIQAPNLERLTITSDIDYGWQIQDLPSIQDANIN 60
Query: 252 VDNESTDRDFVQLLTCFAR 270
+++ S DRDFV+LLT A+
Sbjct: 61 IEDYSIDRDFVKLLTSLAQ 79
>Os08g0268200
Length = 394
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/154 (39%), Positives = 80/154 (51%), Gaps = 6/154 (3%)
Query: 115 LAGRGVEHLALIFSEADNFLFHTLHAAIFSCRELTKLELGSCRLPAAPSDFSGFPNLTVL 174
+A +GV+ L+L FS A+FSC L +L+L C +PAAP F GFPNL L
Sbjct: 1 MARKGVQDLSLEFSLGRKPC-RLPGPALFSCAALVRLDLEQCDMPAAPPGFPGFPNLERL 59
Query: 175 TLTMVAFPPHGERT-LEAMISSAPLLQSLELKNV-SMEGGEWDEWVIRAPNLKDLIIQLE 232
L V P G T LE +I +A L L+L V + GG D W IRAP L++L I +
Sbjct: 60 DLVYVTLPFAGAGTQLEHLIVAAEKLAVLKLSLVITTTGGGVDTWAIRAPKLRELFITMA 119
Query: 233 F--DFLWEIEQ-LPSIQTATISVDNESTDRDFVQ 263
D I LP ++ ATIS D +DF+
Sbjct: 120 MGDDNGCRIPMPLPMLEEATISFDRLFGTQDFLD 153
>Os08g0267700
Length = 178
Score = 74.7 bits (182), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 60/155 (38%), Positives = 81/155 (52%), Gaps = 11/155 (7%)
Query: 115 LAGRGVEHLALIFSEADNFLFHTLHAAIFSCRELTKLELGSCRLPAAPSDFSGFPNLTVL 174
+A +GV+ L+L FS D L H A+FSC EL L L C +P F GFPNL L
Sbjct: 1 MARKGVQDLSLKFSFDD--LPHLPGPALFSCAELVSLRLEKCDMPPG---FPGFPNLERL 55
Query: 175 TLTMVAFP-PHGERTLEAMISSAPLLQSLELKNV-SMEGG-EWDEWVIRAPNLKDLIIQL 231
L V P LE +I ++ L LEL N+ +M+G D W IRAPNL++L + +
Sbjct: 56 YLVGVTLPYARAGTQLEHLILASENLAVLELSNLGTMDGAVVVDPWAIRAPNLRELSVTM 115
Query: 232 EF--DFLWEI-EQLPSIQTATISVDNESTDRDFVQ 263
DF I E LP ++ A IS D ++F+
Sbjct: 116 PMGVDFGCRITEALPKLEDAYISFDCVFGTQEFLD 150
>Os01g0596300 Cyclin-like F-box domain containing protein
Length = 474
Score = 67.8 bits (164), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 84/188 (44%), Gaps = 14/188 (7%)
Query: 26 LNSLPSEILENIVGRLPVRQAVRTSALSRDWRRRWESSPGI----RFXXXXXXXXXXXXX 81
+++LP ++L NIV RLPV+ A RT+AL+ WRR W S+P +
Sbjct: 36 VSALPDDLLRNIVARLPVKDAARTAALASRWRRVWSSTPLVLRDADLLFSAGEAAGVAAV 95
Query: 82 XQILARYACPVR--HFRHGWIESGGSARADEWFVVLAGRGVEHLALIFSEADNFLFHTLH 139
+ LA + P R H H A EW ++A +GVE L + F L
Sbjct: 96 GRALAGHPGPFRVVHIEHCMFAFHRPELA-EWARLVAAKGVEDLVFVNIPVHYFDV-PLP 153
Query: 140 AAIFSCRELTKLELGSCRLPAA---PSDFSGFPNLTVLTLTMVAFPPHGERTLEAMISSA 196
A I C L +L +G+ PA P FP+L L + R L +++ +
Sbjct: 154 ADILRCAALRRLFIGNWNFPATSGFPRGADVFPHLLELYIWNTVM---SARDLNHLLACS 210
Query: 197 PLLQSLEL 204
P+LQSL L
Sbjct: 211 PVLQSLAL 218
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.136 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,373,154
Number of extensions: 365438
Number of successful extensions: 1635
Number of sequences better than 1.0e-10: 19
Number of HSP's gapped: 1609
Number of HSP's successfully gapped: 19
Length of query: 279
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 179
Effective length of database: 11,814,401
Effective search space: 2114777779
Effective search space used: 2114777779
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 155 (64.3 bits)