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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0596300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cyclin-like F-box domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.05 (0.0261) R2 : 0.0062
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0928 (0.055) R2dN8 : 0.00801 R2N8 : 0.0062
σ : 0.492
deviance : 111.06
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
104.31 0.48 3.08 0.271 0.0555 4.13 0.342 14.2 0.126 10.2 995 5633 -- --
109.75 0.492 3.04 0.13 0.0593 0.1 0.373 -- 0.108 10.1 995 5633 -- --
104.71 0.477 3.08 0.31 0.0557 4.7 -- 16.2 0.127 10.7 995 6065 -- --
108.39 0.485 3.04 0.0867 0.0625 0.382 -- -- 0.098 10 997.9 5923 -- --
104.84 0.477 3.09 0.325 -- 5.41 -- 18.7 0.139 -- 994.9 5605 -- --
109.76 0.491 3.04 0.13 0.059 -- 0.371 -- 0.108 10.2 -- -- -- --
110.31 0.492 3.04 0.145 0.057 -- -- -- 0.109 10.4 -- -- -- --
108.33 0.485 3.04 0.14 -- 0.489 -- -- 0.129 -- 997.6 5832 -- --
108.68 0.486 3.04 -- 0.0502 0.482 -- -- 0.116 10.1 997.8 5889 -- --
110.51 0.491 3.04 0.144 -- -- -- -- 0.109 -- -- -- -- --
110.87 0.493 3.05 -- 0.0562 -- -- -- 0.0928 10.2 -- -- -- --
108.83 0.486 3.04 -- -- 0.487 -- -- 0.116 -- 997.8 5848 -- --
111.06 0.492 3.05 -- -- -- -- -- 0.0928 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 96.93 radiation 1.0 4320 < th dose dependent rect. 23 1
2 99.82 temperature 25.0 30 > th dose dependent rect. 24 1
3 99.98 humidity 90.0 30 < th dose dependent rect. 24 1
4 100.06 temperature 10.0 30 > th dose dependent rect. 24 1
5 100.07 humidity 90.0 30 < th dose independent rect. 24 1
7 100.09 wind 1.0 30 > th dose independent rect. 24 1
9 100.16 wind 7.0 30 < th dose independent rect. 24 1
11 100.16 temperature 10.0 30 > th dose independent rect. 24 1
12 100.16 temperature 30.0 30 < th dose independent rect. 24 1
13 100.16 humidity 50.0 30 > th dose independent rect. 24 1
16 100.16 atmosphere 995.0 30 > th dose independent rect. 24 1
17 100.16 radiation 1.0 30 < th dose independent rect. 24 1
22 100.16 precipitation 0.1 30 < th dose independent rect. 24 1
23 100.16 temperature 10.0 30 > th dose independent rect. 1 23
24 100.16 radiation 1.0 30 < th dose dependent rect. 24 1
29 100.16 precipitation 0.1 30 < th dose dependent rect. 24 1
31 100.19 temperature 25.0 30 > th dose independent rect. 24 1
32 100.20 atmosphere 1010.0 30 < th dose independent rect. 24 1
34 100.23 temperature 10.0 1440 > th dose independent rect. 1 1
37 100.23 temperature 30.0 1440 < th dose independent rect. 1 1
41 100.23 humidity 50.0 1440 > th dose independent rect. 1 1
51 100.23 atmosphere 995.0 1440 > th dose independent rect. 1 1
52 100.23 radiation 1.0 1440 < th dose independent rect. 1 1
72 100.23 temperature 10.0 1440 > th dose independent rect. 2 23
75 100.23 radiation 1.0 1440 < th dose dependent rect. 1 1
82 100.30 atmosphere 1015.0 30 < th dose dependent rect. 24 1
84 100.34 wind 9.0 30 < th dose dependent rect. 24 1
85 100.36 humidity 50.0 30 > th dose dependent rect. 24 1
91 100.47 atmosphere 995.0 30 > th dose dependent rect. 24 1
92 100.48 atmosphere 995.0 4320 > th dose independent rect. 11 3
93 100.48 wind 1.0 30 > th dose dependent rect. 24 1
94 100.51 atmosphere 995.0 4320 > th dose independent rect. 4 10
98 100.58 precipitation 0.1 4320 > th dose dependent rect. 20 1
109 100.83 atmosphere 995.0 4320 < th dose dependent rect. 14 1
130 101.06 atmosphere 995.0 4320 < th dose independent rect. 14 1
144 101.33 wind 9.0 30 < th dose independent rect. 1 23
155 101.52 atmosphere 995.0 4320 > th dose independent rect. 12 5
156 101.58 temperature 30.0 30 < th dose dependent rect. 24 1
158 101.60 atmosphere 995.0 4320 > th dose independent rect. 8 9
173 101.74 wind 7.0 1440 < th dose independent rect. 1 1
221 102.24 atmosphere 995.0 4320 > th dose independent rect. 14 2
331 103.18 wind 1.0 90 < th dose dependent rect. 9 1
344 103.35 atmosphere 995.0 4320 > th dose independent rect. 19 19
393 103.63 atmosphere 1010.0 90 > th dose independent rect. 8 1
394 103.63 atmosphere 1010.0 10 > th dose independent rect. 9 1
448 103.63 temperature 25.0 30 > th dose dependent rect. 22 3
456 103.67 precipitation 0.1 4320 < th dose independent rect. 20 1
458 103.67 precipitation 0.1 4320 < th dose dependent rect. 20 1
463 103.72 precipitation 0.1 4320 > th dose independent rect. 20 1
465 103.74 temperature 25.0 10 > th dose independent rect. 22 4
477 103.81 wind 1.0 90 < th dose independent rect. 8 2
502 104.10 wind 7.0 4320 > th dose independent rect. 6 1
504 104.13 wind 7.0 4320 > th dose dependent rect. 6 1
517 104.29 temperature 25.0 270 > th dose independent rect. 21 2
523 104.39 radiation 20.0 10 < th dose independent rect. 12 1
539 104.60 radiation 1.0 4320 < th dose dependent rect. 19 6
552 104.62 radiation 10.0 43200 < th dose dependent rect. 23 1
571 104.82 atmosphere 1000.0 30 > th dose independent rect. 23 23
598 105.18 atmosphere 1000.0 10 < th dose independent rect. 10 2
617 105.27 radiation 30.0 90 > th dose independent rect. 8 1
634 105.36 temperature 30.0 30 < th dose independent rect. 23 23
652 105.37 radiation 1.0 4320 < th dose dependent rect. 23 5
657 105.44 wind 9.0 1440 < th dose independent rect. 23 1
658 105.44 temperature 25.0 30 > th dose independent rect. 22 1
659 105.44 temperature 10.0 1440 > th dose independent rect. 23 1
662 105.44 temperature 30.0 1440 < th dose independent rect. 23 1
666 105.44 humidity 50.0 1440 > th dose independent rect. 23 1
676 105.44 atmosphere 995.0 1440 > th dose independent rect. 23 1
677 105.44 radiation 1.0 1440 < th dose independent rect. 23 1
698 105.44 temperature 10.0 1440 > th dose independent rect. 24 23
701 105.44 temperature 25.0 10 > th dose dependent rect. 22 1
711 105.46 wind 7.0 4320 > th dose independent rect. 21 1
716 105.47 atmosphere 1005.0 30 > th dose dependent rect. 22 1
717 105.48 wind 3.0 30 < th dose independent rect. 22 1
721 105.49 humidity 80.0 30 > th dose independent rect. 22 1
722 105.49 humidity 90.0 30 < th dose independent rect. 22 1
745 105.51 atmosphere 1005.0 30 > th dose independent rect. 22 1
751 105.52 wind 1.0 30 > th dose independent rect. 22 1
761 105.53 wind 5.0 30 < th dose dependent rect. 22 1
766 105.54 temperature 10.0 30 > th dose independent rect. 22 1
768 105.54 temperature 30.0 30 < th dose independent rect. 22 1
769 105.54 humidity 50.0 30 > th dose independent rect. 22 1
772 105.54 atmosphere 995.0 30 > th dose independent rect. 22 1
774 105.54 atmosphere 1010.0 30 < th dose independent rect. 22 1
776 105.54 radiation 1.0 30 < th dose independent rect. 22 1
781 105.54 precipitation 0.1 30 < th dose independent rect. 22 1
783 105.54 temperature 10.0 30 > th dose independent rect. 23 23
784 105.54 humidity 50.0 30 > th dose dependent rect. 22 1
786 105.54 radiation 1.0 30 < th dose dependent rect. 22 1
791 105.54 precipitation 0.1 30 < th dose dependent rect. 22 1
810 105.57 humidity 90.0 30 < th dose dependent rect. 22 1
830 105.59 atmosphere 1015.0 30 < th dose dependent rect. 22 1
849 105.61 precipitation 0.1 1440 < th dose independent rect. 23 1
851 105.61 precipitation 0.1 30 < th dose independent rect. 23 23
852 105.61 precipitation 0.1 1440 < th dose dependent rect. 23 1
853 105.61 precipitation 0.1 30 < th dose dependent rect. 23 23
856 105.62 wind 1.0 30 > th dose dependent rect. 22 1
859 105.63 atmosphere 995.0 4320 > th dose independent sin 7 NA
863 105.63 radiation 1.0 4320 < th dose dependent rect. 19 9
864 105.64 humidity 90.0 4320 < th dose independent rect. 4 1
901 105.68 temperature 30.0 30 < th dose dependent rect. 22 1
933 105.71 atmosphere 995.0 4320 < th dose dependent sin 5 NA
934 105.72 atmosphere 1015.0 1440 < th dose independent rect. 1 1
940 105.74 humidity 90.0 4320 > th dose independent rect. 3 2
952 105.79 radiation 40.0 30 > th dose independent sin 11 NA