BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0625500 Os07g0625500|AK064628
(174 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0625500 Similar to Fimbriata-associated protein (Fragm... 317 4e-87
Os11g0456300 Similar to Fimbriata-associated protein (Fragm... 122 1e-28
Os07g0145300 116 7e-27
Os06g0113800 Similar to Kinetechore (Skp1p-like) protein-like 115 1e-26
Os07g0624900 115 2e-26
Os07g0144800 114 4e-26
Os08g0375700 SKP1 component family protein 112 1e-25
Os07g0144900 112 1e-25
Os09g0274700 109 1e-24
Os07g0625000 107 5e-24
Os09g0274432 107 6e-24
Os09g0273800 Similar to Fimbriata-associated protein (Fragm... 106 8e-24
Os09g0274800 106 9e-24
Os07g0625200 106 9e-24
Os08g0375500 100 4e-22
Os09g0275200 Similar to Fimbriata-associated protein (Fragm... 100 4e-22
Os07g0625300 93 8e-20
Os10g0438100 Similar to Fimbriata-associated protein (Fragm... 90 8e-19
Os09g0272900 Similar to Skp1 (Fragment) 88 3e-18
Os07g0409500 SKP1 component family protein 75 2e-14
Os07g0625400 SKP1 component family protein 70 1e-12
Os02g0101600 SKP1 component family protein 69 2e-12
>Os07g0625500 Similar to Fimbriata-associated protein (Fragment)
Length = 174
Score = 317 bits (811), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 152/152 (100%), Positives = 152/152 (100%)
Query: 23 RMITLTSNEGKAFVVTEASARQSATIRSMVDDGGCVDKGFPLPNVDSKTLARVIQYCDEH 82
RMITLTSNEGKAFVVTEASARQSATIRSMVDDGGCVDKGFPLPNVDSKTLARVIQYCDEH
Sbjct: 23 RMITLTSNEGKAFVVTEASARQSATIRSMVDDGGCVDKGFPLPNVDSKTLARVIQYCDEH 82
Query: 83 GNKEPHTVDERAALAKFDRDFIAELDADKAFLYDVTMAANYLHIQGLLALTTQCVADTIK 142
GNKEPHTVDERAALAKFDRDFIAELDADKAFLYDVTMAANYLHIQGLLALTTQCVADTIK
Sbjct: 83 GNKEPHTVDERAALAKFDRDFIAELDADKAFLYDVTMAANYLHIQGLLALTTQCVADTIK 142
Query: 143 GKTPEEIRTAFGIEYDLTAQDEKEIKEEDTHA 174
GKTPEEIRTAFGIEYDLTAQDEKEIKEEDTHA
Sbjct: 143 GKTPEEIRTAFGIEYDLTAQDEKEIKEEDTHA 174
>Os11g0456300 Similar to Fimbriata-associated protein (Fragment)
Length = 173
Score = 122 bits (306), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 70/154 (45%), Positives = 94/154 (61%), Gaps = 20/154 (12%)
Query: 23 RMITLTSNEGKAFVVTEASARQSATIRSMVDDGGCVDKGFPLPNVDSKTLARVIQYCDEH 82
+MITL S++G+ F V E A +S TIR M++D C D G PLPNV+SK L++VI+YC++H
Sbjct: 8 KMITLKSSDGEEFEVEEPVAMESQTIRHMIEDD-CADNGIPLPNVNSKILSKVIEYCNKH 66
Query: 83 GNKEPHTVDERAA----------------LAKFDRDFIAELDADKAFLYDVTMAANYLHI 126
+ + A L +D DF+ D+A L+D+ +AANYL+I
Sbjct: 67 VHAAAAAASKAADDAASAAAAVPPPSGEDLKNWDADFVK---VDQATLFDLILAANYLNI 123
Query: 127 QGLLALTTQCVADTIKGKTPEEIRTAFGIEYDLT 160
+GLL LT Q VAD IKGKTPEEIR F I+ D T
Sbjct: 124 KGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFT 157
>Os07g0145300
Length = 164
Score = 116 bits (291), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 66/150 (44%), Positives = 96/150 (64%), Gaps = 7/150 (4%)
Query: 25 ITLTSNEGKAFVVTEASARQSATIRSMVDDGGCVDKGFPLPNVDSKTLARVIQYCDEHGN 84
I L S++G+ F V A+A S + +M++D C G PLPNV SK LA+VI+YC +H
Sbjct: 20 ILLISSDGEHFNVPSAAASLSQLVSNMIEDD-CTTNGVPLPNVASKVLAKVIEYCIKHA- 77
Query: 85 KEPHTVDERAALAKFDRDFIAELDADKAFLYDVTMAANYLHIQGLLALTTQCVADTIKGK 144
+E L FD +FI D DK LYD+ +A+N+++I+ LL L Q A+ IKGK
Sbjct: 78 --AAGEEEEKDLKSFDAEFI---DVDKNMLYDLLLASNFMNIKSLLDLCCQHTANLIKGK 132
Query: 145 TPEEIRTAFGIEYDLTAQDEKEIKEEDTHA 174
+PE+IR FGI+ D T ++E+EI++E+T A
Sbjct: 133 SPEQIRKEFGIKNDFTPEEEEEIRKENTWA 162
>Os06g0113800 Similar to Kinetechore (Skp1p-like) protein-like
Length = 166
Score = 115 bits (289), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 98/156 (62%), Gaps = 13/156 (8%)
Query: 23 RMITLTSNEGKAFVVTEASARQSATIRSMVDDGGCVD--KGFPLPNVDSKTLARVIQYCD 80
+MI + S++G+AF +TEA+A S + M++DG D G LPNV LA+VI+YC
Sbjct: 11 KMIKVISSDGEAFEMTEAAASMSRILLHMIEDGCTGDGGAGITLPNVAGSALAKVIEYCT 70
Query: 81 EH------GNKEPHTVDERAALAKFDRDFIAELDADKAFLYDVTMAANYLHIQGLLALTT 134
+H G+ E L KFD +F+ E+ D LYD+ MAAN++ ++GLL+L
Sbjct: 71 KHAIAAAEGSSSSRKAKEE--LKKFDVEFM-EVGID--MLYDLIMAANFMGVEGLLSLAA 125
Query: 135 QCVADTIKGKTPEEIRTAFGIEYDLTAQDEKEIKEE 170
Q A+ IKGK+PE+IR FGI+ D T ++E++I++E
Sbjct: 126 QRTAELIKGKSPEQIREMFGIKNDHTPEEEEQIRKE 161
>Os07g0624900
Length = 200
Score = 115 bits (287), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 72/141 (51%), Positives = 86/141 (60%), Gaps = 9/141 (6%)
Query: 23 RMITLTSNEGKAFVVTEASARQSATIRSMV---DDGGCVDKGFPLPNVDSKTLARVIQYC 79
R I L S +GK VTEASAR S TI M+ GG D+ P P++D TL V+QYC
Sbjct: 49 RTIHLKSKDGKQHDVTEASARLSKTIAGMILAGGGGGGADQCIPTPDIDHDTLRVVMQYC 108
Query: 80 DEHGNKEPHTVDERAALAKFDRDFIAELDADKAFLYDVTMAANYLHIQGLLALTTQCVAD 139
D+H + D L ++D DF+ ELD D L+DV AANYL I GLL LT + VAD
Sbjct: 109 DKHAADDADEED----LKEWDEDFVDELDQDA--LFDVIAAANYLDIDGLLDLTCKRVAD 162
Query: 140 TIKGKTPEEIRTAFGIEYDLT 160
TIKGKTPEEIR F I DL+
Sbjct: 163 TIKGKTPEEIRKEFNIVNDLS 183
>Os07g0144800
Length = 157
Score = 114 bits (285), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 65/150 (43%), Positives = 95/150 (63%), Gaps = 7/150 (4%)
Query: 25 ITLTSNEGKAFVVTEASARQSATIRSMVDDGGCVDKGFPLPNVDSKTLARVIQYCDEHGN 84
I L S++G+ F V A+A S + +M+++ C G PLPNV SK LA+VI+YC +H
Sbjct: 13 ILLISSDGEHFNVPSAAASLSQLVSNMIEND-CTTNGVPLPNVASKVLAKVIEYCVKHAA 71
Query: 85 KEPHTVDERAALAKFDRDFIAELDADKAFLYDVTMAANYLHIQGLLALTTQCVADTIKGK 144
DE L FD +F+ +D DK LY + +A+N+L+I+ LL L Q A+ IKGK
Sbjct: 72 A---AEDEEKELKSFDAEFM--IDVDKNMLYGLLLASNFLNIKSLLDLCCQHTANLIKGK 126
Query: 145 TPEEIRTAFGIEYDLTAQDEKEIKEEDTHA 174
+PE+IR FGI+ D T ++E EI++E+T A
Sbjct: 127 SPEQIRKEFGIKNDFTPEEE-EIRKENTWA 155
>Os08g0375700 SKP1 component family protein
Length = 169
Score = 112 bits (281), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 94/161 (58%), Gaps = 13/161 (8%)
Query: 23 RMITLTSNEGKAFVVTEASARQSATIRSMVDDGGCVDKGFPLPNVDSKTLARVIQYCDEH 82
+MI L S++G+ F ++EA+A QS T+ M++D C D G PLPNV + LA+V++Y +H
Sbjct: 10 KMILLISSDGERFELSEAAASQSKTLSHMIEDD-CTDNGVPLPNVTAVVLAKVVEYFKKH 68
Query: 83 GNKEPHTVDERAA---------LAKFDRDFIAELDADKAFLYDVTMAANYLHIQGLLALT 133
P E A L FD +F+ D D+ ++++ +AAN+L+ Q LL LT
Sbjct: 69 AAVTPKPATEAVAADKAKREEELKSFDAEFV---DVDRTMVFELILAANFLNAQDLLDLT 125
Query: 134 TQCVADTIKGKTPEEIRTAFGIEYDLTAQDEKEIKEEDTHA 174
Q AD IK + EE+R F I D T ++E E+++E+ A
Sbjct: 126 CQHAADLIKDMSVEEVREVFNITNDFTPEEEAEVRKENAWA 166
>Os07g0144900
Length = 172
Score = 112 bits (280), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 64/158 (40%), Positives = 90/158 (56%), Gaps = 9/158 (5%)
Query: 23 RMITLTSNEGKAFVVTEASARQSATIRSMVDDGGCVDKGFPLPNVDSKTLARVIQYCDEH 82
+MI L S +GK F VTEA A QS I +M++D C + G LPNVD L V+ YC+ H
Sbjct: 15 KMIILISADGKRFEVTEAVASQSQLISNMIEDD-CTENGVRLPNVDGDILTMVVDYCNMH 73
Query: 83 GNKEPHTVDERAA------LAKFDRDFIAELDADKAFLYDVTMAANYLHIQGLLALTTQC 136
D A L KFD + + L+ L+ + +AAN+L+I+ LL +T Q
Sbjct: 74 AGDAAAAGDTMKASSTEEELKKFDAELVQALE--NPVLFKLILAANFLNIKSLLDMTCQR 131
Query: 137 VADTIKGKTPEEIRTAFGIEYDLTAQDEKEIKEEDTHA 174
VAD + GKTPE++R F IE D T ++E I++E+ A
Sbjct: 132 VADMMSGKTPEQMRETFSIENDFTPEEEAAIRQENAWA 169
>Os09g0274700
Length = 165
Score = 109 bits (273), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 62/139 (44%), Positives = 83/139 (59%), Gaps = 8/139 (5%)
Query: 25 ITLTSNEGKAFVVTEASARQSATIRSMVDDGGCVDKGFPLPNVDSKTLARVIQYCDEHGN 84
I L S++G+ F VTEA A S + +M++DG C + G PLPNV S LA+V++YC +H
Sbjct: 15 ILLISSDGQHFQVTEAEASMSKLVSNMIEDG-CTENGVPLPNVASNVLAKVLEYCKKHAA 73
Query: 85 K---EPHTVDERAALAKFDRDFIAELDADKAFLYDVTMAANYLHIQGLLALTTQCVADTI 141
E V ++ L FD FI D D L+++ +AANYL++ LL L Q AD I
Sbjct: 74 AAAAEDVAVKDQE-LKSFDASFI---DVDNTMLFNLILAANYLNVPSLLDLACQHTADLI 129
Query: 142 KGKTPEEIRTAFGIEYDLT 160
KGKT +EIR FGI D T
Sbjct: 130 KGKTVQEIRDMFGIVNDFT 148
>Os07g0625000
Length = 724
Score = 107 bits (267), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 64/132 (48%), Positives = 84/132 (63%), Gaps = 3/132 (2%)
Query: 31 EGKAFVVTEASARQSATIRSMVDDGGCVDKGFPLPNVDSKTLARVIQYCDEHGNKEPHTV 90
+G+ VTEASAR S I +D G + PLP+VD KTL +VI+YCDEH N+ T
Sbjct: 115 DGEPVEVTEASARISKVIGDKIDAGRG-GEAIPLPHVDKKTLKKVIEYCDEHANENSDTD 173
Query: 91 DERAALAKFDRDFIAELDA-DKAFLYDVTMAANYLHIQGLLALTTQCVADTIKGKTPEEI 149
+++ L +D+ FI ELD D +FL+ V +A++YL I GLL LT Q VAD K KT EEI
Sbjct: 174 EQKEELKNWDKAFIDELDEDDGSFLFLVLLASSYLKIDGLLDLTYQRVADNSKAKTTEEI 233
Query: 150 RTAFG-IEYDLT 160
R F IE +L+
Sbjct: 234 RKTFSTIEIELS 245
>Os09g0274432
Length = 167
Score = 107 bits (266), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 89/152 (58%), Gaps = 3/152 (1%)
Query: 23 RMITLTSNEGKAFVVTEASARQSATIRSMVDDGGCVDKGFPLPNVDSKTLARVIQYCDEH 82
+MI L S++G F ++EA+A S T+ +M++D + PL NV + LA V++YC+ H
Sbjct: 16 KMILLVSSDGVKFELSEAAASLSKTLGNMIEDDCATNGAIPLANVAADILAMVVEYCNRH 75
Query: 83 GNKEPHTVDERAALAKFDRDFIAELDADKAFLYDVTMAANYLHIQGLLALTTQCVADTIK 142
+ + + KFD +F+ + D+ L+ + AAN+L++ LL LT Q AD IK
Sbjct: 76 AAAAANASGQEELIRKFDAEFV---NIDRKKLFGLINAANFLNMPCLLELTCQRTADLIK 132
Query: 143 GKTPEEIRTAFGIEYDLTAQDEKEIKEEDTHA 174
PE++R FGIE D T ++E E++ E+ A
Sbjct: 133 DMMPEQVREVFGIENDFTPEEEAEVRNENAWA 164
>Os09g0273800 Similar to Fimbriata-associated protein (Fragment)
Length = 167
Score = 106 bits (265), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 60/140 (42%), Positives = 79/140 (56%), Gaps = 8/140 (5%)
Query: 25 ITLTSNEGKAFVVTEASARQSATIRSMVDDGGCVDKGFPLPNVDSKTLARVIQYCDEHGN 84
I L S++G+ F VTEA A S + +M++D C + G PLPNV S LA+V+ YC +H
Sbjct: 15 ILLISSDGQHFQVTEAEASMSKLVSNMIEDD-CTENGVPLPNVASNVLAKVLDYCKKHAA 73
Query: 85 KEPHTVDERAA----LAKFDRDFIAELDADKAFLYDVTMAANYLHIQGLLALTTQCVADT 140
++ A L FD FI D D L+ + +AANYL++ LL L Q AD
Sbjct: 74 AAAAAAEDVAVKDQELKSFDASFI---DVDNTMLFGLILAANYLNVPSLLDLACQHTADL 130
Query: 141 IKGKTPEEIRTAFGIEYDLT 160
IKGKT +EIR FGI D T
Sbjct: 131 IKGKTVQEIRDTFGIVNDFT 150
>Os09g0274800
Length = 172
Score = 106 bits (264), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 58/157 (36%), Positives = 91/157 (57%), Gaps = 8/157 (5%)
Query: 23 RMITLTSNEGKAFVVTEASARQSATIRSMVDDGGCVDKGFPLPNVDSKTLARVIQYCDEH 82
+MI L S++G F ++EA+A S T+ +M++D + PL NV S LA+V++YC++H
Sbjct: 16 KMILLISSDGAKFELSEAAASLSKTLGNMIEDDCATNGAIPLANVASDILAKVVEYCNKH 75
Query: 83 GNKEPHTVDERAA-----LAKFDRDFIAELDADKAFLYDVTMAANYLHIQGLLALTTQCV 137
A L+KFD +F++ D+ L+ + AAN+L++ LL LT Q
Sbjct: 76 AAATATATAAAKASGEEELSKFDAEFVS---VDRKKLFGLINAANFLNMPCLLELTCQRA 132
Query: 138 ADTIKGKTPEEIRTAFGIEYDLTAQDEKEIKEEDTHA 174
AD IK PE++R FGIE D T ++E E++ E+ A
Sbjct: 133 ADLIKDMMPEQVREVFGIENDFTPEEEAEVRNENAWA 169
>Os07g0625200
Length = 221
Score = 106 bits (264), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 53/114 (46%), Positives = 75/114 (65%), Gaps = 1/114 (0%)
Query: 23 RMITLTSNEGKAFVVTEASARQSATIRSMVDDGGCVDKGFPLPNVDSKTLARVIQYCDEH 82
RMITL S++G+ V EASAR S TI +++DDG D+ PLP+V KTL +V++YCD+H
Sbjct: 99 RMITLESSDGEVVKVKEASARLSKTIGNIIDDGRG-DEAIPLPDVSYKTLKKVVEYCDKH 157
Query: 83 GNKEPHTVDERAALAKFDRDFIAELDADKAFLYDVTMAANYLHIQGLLALTTQC 136
+++ T +++ L +D+ FI EL D L V MA+NYL I GL L +QC
Sbjct: 158 ADEKSDTDEQKEELKNWDKAFIDELAEDDDSLVKVIMASNYLKIDGLHNLASQC 211
>Os08g0375500
Length = 169
Score = 100 bits (250), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 92/161 (57%), Gaps = 13/161 (8%)
Query: 23 RMITLTSNEGKAFVVTEASARQSATIRSMVDDGGCVDKGFPLPNVDSKTLARVIQYCDEH 82
+MI L S++G+ F ++EA+A QS T+ M++D C D G PLPNV + L +V++Y +H
Sbjct: 10 KMILLISSDGERFELSEAAASQSKTLSHMIEDD-CTDNGVPLPNVTAVVLVKVVEYFKKH 68
Query: 83 GNKEPHTVDERAA---------LAKFDRDFIAELDADKAFLYDVTMAANYLHIQGLLALT 133
P E L FD +F+ D D+ L+++ +AAN+L+ Q LL LT
Sbjct: 69 AAVTPKPATEAVVADKAKREEELKSFDAEFV---DVDRTMLFELILAANFLNAQDLLDLT 125
Query: 134 TQCVADTIKGKTPEEIRTAFGIEYDLTAQDEKEIKEEDTHA 174
Q AD IK + EE+R F I D T ++E E+++E+ A
Sbjct: 126 CQHAADLIKDMSVEEVREVFNITNDFTPEEEAEVRKENAWA 166
>Os09g0275200 Similar to Fimbriata-associated protein (Fragment)
Length = 160
Score = 100 bits (250), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 62/149 (41%), Positives = 86/149 (57%), Gaps = 9/149 (6%)
Query: 23 RMITLTSNEGKAFVVTEASARQSATIRSMVDDG-GCVDKGFPLPNVDSKTLARVIQYCDE 81
+ I L S +G+ F V +A T+R M+ G G + PLPNV S LARV+ Y
Sbjct: 14 KTIDLVSKDGERFEVARDAALLCKTLRWMIKGGYGRI----PLPNVASPILARVVDYLAR 69
Query: 82 HGNKEPHTVDERAALAKFDRDFIAELDADKAFLYDVTMAANYLHIQGLLALTTQCVADTI 141
H D+ L +FDRDF+A +D D L+D+ +AANYL GLL L + VA +
Sbjct: 70 HAAAAAAMDDD--GLDRFDRDFLAGVDQDT--LFDLLLAANYLQADGLLDLACKKVAAMM 125
Query: 142 KGKTPEEIRTAFGIEYDLTAQDEKEIKEE 170
GK+PE++R F I DLT ++EKEI+E+
Sbjct: 126 TGKSPEQMREIFHIVNDLTPEEEKEIRED 154
>Os07g0625300
Length = 277
Score = 93.2 bits (230), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 59/133 (44%), Positives = 74/133 (55%), Gaps = 5/133 (3%)
Query: 23 RMITLTSNEGKAFVVTEASARQSATIRSMVDDGGCV-DKGFPLPNVDSKTLARVIQYCDE 81
RMITL S +GK V EASAR S TI +++DDG D+ P V K L +VI+YCDE
Sbjct: 101 RMITLKSLDGKTVKVKEASARLSETIGNLIDDGRRRGDETIPRLFVSYKALMKVIEYCDE 160
Query: 82 HGNKEPHTVDERAALAKFDRDFIAELDADKAFLYDVTMAANYLHIQGLLALTTQCVADTI 141
H N + T + + L +D+ FI +LD D +V A+NYL I GL LT Q D
Sbjct: 161 HANNKADTDERKEELKNWDKAFIDKLDEDNILFVEVLAASNYLKITGLSKLTDQRFVDPF 220
Query: 142 K--GKTP--EEIR 150
KTP EE R
Sbjct: 221 NTSNKTPDAEETR 233
>Os10g0438100 Similar to Fimbriata-associated protein (Fragment)
Length = 220
Score = 90.1 bits (222), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 88/184 (47%), Gaps = 41/184 (22%)
Query: 25 ITLTSNEGKAFVVTEASARQSATIRSMVDDGGCVDKGFPLPNVDSKTLARVIQYCDEHGN 84
+ L S++G + + A+AR S T+R M++D C P+ V S LA +++YC+ H
Sbjct: 41 LVLVSDDGVEVLASVAAARVSKTLRGMIED-ECATGAIPIAGVHSDVLALLVEYCERHA- 98
Query: 85 KEPHT-------------------------------VDERA---ALAKFDRDFIAELDAD 110
PH VD A L FD+ F LD D
Sbjct: 99 --PHYDPEASDRDRYPFPPFPVELPPTASSIKPVTFVDPDADPHGLKAFDKKF---LDVD 153
Query: 111 KAFLYDVTMAANYLHIQGLLALTTQCVADTIKGKTPEEIRTAFGIEYDLTAQDEKEIKEE 170
+ L+++ MAANYL+I+ LL VAD ++GK PEEIR F IE D T + E E++ E
Sbjct: 154 NSTLFEIIMAANYLNIEELLDDACTAVADKMRGKKPEEIRDIFEIENDYTPEQEAEVRRE 213
Query: 171 DTHA 174
+ A
Sbjct: 214 NAWA 217
>Os09g0272900 Similar to Skp1 (Fragment)
Length = 198
Score = 88.2 bits (217), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/149 (36%), Positives = 79/149 (53%), Gaps = 16/149 (10%)
Query: 24 MITLTSNEGKAFVVTEASARQSATIRSMV--DDGGCVDKGFPLPNVDSKTLARVIQYCDE 81
M+TL S++G F V EA+ R S T+ + DD ++ G PLPNV LA+V++YC +
Sbjct: 38 MVTLISSDGARFEVPEAAVRLSQTVLDEMKKDDYNAIN-GIPLPNVAGDVLAKVVEYCTK 96
Query: 82 HGNKEPHTV----------DERAALAKFDRDFIAELDADKAFLYDVTMAANYLHIQGLLA 131
H + + +E + FD +FI D LY + AA+ + IQGL+
Sbjct: 97 HASAAAAAINADTAKTSKEEEELMMKSFDDEFIL---VDNHMLYSLLTAADAMRIQGLMD 153
Query: 132 LTTQCVADTIKGKTPEEIRTAFGIEYDLT 160
L Q +AD IKGKT E++R GI D T
Sbjct: 154 LACQRLADMIKGKTSEQMRQTLGITNDFT 182
>Os07g0409500 SKP1 component family protein
Length = 190
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 86/171 (50%), Gaps = 25/171 (14%)
Query: 23 RMITLTSNEGKAFVVTEASARQSATIRSMVDDGGCVDKG--FPLPN-VDSKTLARVIQYC 79
+ I+ ++G+AF + A+A S IR M D +D G LP+ + S +V +YC
Sbjct: 15 KTISFRCSDGQAFHMPVAAAMLSTAIRKMFDKYPSIDHGGVIELPHQISSGIFPKVKEYC 74
Query: 80 DEH------GNK-------------EPHTVDERAALAKFDRDFIAELDADKAFLYDVTMA 120
+H GN T DE L +D++F+ + + L+D+ +
Sbjct: 75 TKHAKVDDKGNPTVSTNTGAAAAASSSSTDDEEEDLKNWDKEFV---NMEVKPLHDLLLV 131
Query: 121 ANYLHIQGLLALTTQCVADTIKGKTPEEIRTAFGIEYDLTAQDEKEIKEED 171
A+ L I+GL +T + VAD +KGKT EE+R I D T +++K IKE++
Sbjct: 132 AHLLDIKGLFHITCRKVADMLKGKTSEEMRQILNIRNDFTEEEDKAIKEQN 182
>Os07g0625400 SKP1 component family protein
Length = 182
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 63/121 (52%), Gaps = 9/121 (7%)
Query: 43 RQSATIRSMVDDGGCVDKGFPLPNVDSKTLARVIQYCDEHGNKEPHTVDERAALAKFDRD 102
R S + M+D+ C D G PLP VD KT+ ++ +Y ++H + + L +D
Sbjct: 51 RISKLVGDMIDNV-CADHGIPLPKVDIKTVRKMAEYMNKH-----FAITNKEELKIWDEG 104
Query: 103 FIAELDA--DKAFLYDVTMAANYLHIQGLLALTTQCVADTIK-GKTPEEIRTAFGIEYDL 159
FI ELD DK L+ + A+ + GLL L + VA IK GK +EIR G+E D
Sbjct: 105 FINELDGDEDKYSLFKIIRASERVGFYGLLDLASDMVARKIKAGKAIDEIRKFLGVEKDF 164
Query: 160 T 160
T
Sbjct: 165 T 165
>Os02g0101600 SKP1 component family protein
Length = 101
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 45/60 (75%), Gaps = 2/60 (3%)
Query: 23 RMITLTSNEGKAFVVTEASARQSATIRSMVDDGGCVDKGFPLPNVDSKTLARVIQYCDEH 82
+MITL S++G+ F V EA +S TIR M++D C D G PLPNV+SK L++VI+YC++H
Sbjct: 10 KMITLKSSDGEEFEV-EAVGMESQTIRHMIEDK-CADNGIPLPNVNSKILSKVIEYCNKH 67
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.132 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,811,068
Number of extensions: 182809
Number of successful extensions: 498
Number of sequences better than 1.0e-10: 23
Number of HSP's gapped: 467
Number of HSP's successfully gapped: 23
Length of query: 174
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 80
Effective length of database: 12,127,685
Effective search space: 970214800
Effective search space used: 970214800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 152 (63.2 bits)