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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0375700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : SKP1 component family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.19 (0.0225) R2 : 0.00857
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.094 (0.0474) R2dN8 : 0.0111 R2N8 : 0.00857
σ : 0.424
deviance : 82.42
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
78.62 0.417 3.2 -0.0563 0.0847 -0.306 -0.286 1.05 0.0822 2.68 1.076 16 -- --
79.48 0.418 3.19 -0.0092 0.0955 -0.195 -0.417 -- 0.0939 3.14 1.014 14 -- --
78.83 0.417 3.2 -0.0524 0.086 -0.272 -- 1.05 0.0854 2.27 1.1 16 -- --
80.04 0.419 3.19 0.000257 0.0954 -0.188 -- -- 0.0964 2.56 1.014 14 -- --
79.22 0.417 3.2 -0.0547 -- -0.311 -- 1.08 0.0874 -- 1.057 16 -- --
80.68 0.421 3.19 0.0134 0.151 -- -0.383 -- 0.0909 3.3 -- -- -- --
81.14 0.422 3.19 0.0208 0.149 -- -- -- 0.0931 3.16 -- -- -- --
80.5 0.418 3.19 -0.00791 -- -0.271 -- -- 0.0977 -- 1.1 16 -- --
80.04 0.419 3.19 -- 0.0954 -0.188 -- -- 0.0963 2.56 1.014 14 -- --
82.41 0.424 3.19 0.0271 -- -- -- -- 0.097 -- -- -- -- --
81.15 0.421 3.19 -- 0.149 -- -- -- 0.0908 3.16 -- -- -- --
80.51 0.418 3.19 -- -- -0.271 -- -- 0.0989 -- 1.089 16 -- --
82.42 0.424 3.19 -- -- -- -- -- 0.094 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 71.76 wind 1.0 30 < th dose dependent rect. 2 1
2 71.77 wind 1.0 30 < th dose independent rect. 2 1
3 71.77 atmosphere 995.0 30 > th dose independent rect. 3 23
7 71.80 atmosphere 1015.0 30 < th dose dependent rect. 2 1
10 71.82 temperature 25.0 30 < th dose independent rect. 2 1
16 71.85 temperature 10.0 30 > th dose independent rect. 2 1
19 71.85 humidity 50.0 30 > th dose independent rect. 2 1
22 71.85 atmosphere 995.0 30 > th dose independent rect. 2 1
23 71.85 atmosphere 1010.0 30 < th dose independent rect. 2 1
25 71.85 radiation 1.0 30 < th dose independent rect. 2 1
30 71.85 precipitation 0.1 30 < th dose independent rect. 2 1
31 71.85 temperature 10.0 30 > th dose independent rect. 3 23
33 71.85 humidity 50.0 30 > th dose dependent rect. 2 1
34 71.85 atmosphere 1005.0 30 > th dose dependent rect. 2 1
35 71.85 radiation 1.0 30 < th dose dependent rect. 2 1
40 71.85 precipitation 0.1 30 < th dose dependent rect. 2 1
41 71.86 humidity 90.0 30 > th dose independent rect. 2 1
43 71.86 temperature 10.0 30 > th dose dependent rect. 2 1
49 71.87 temperature 30.0 30 < th dose dependent rect. 2 1
55 71.90 atmosphere 995.0 30 > th dose dependent rect. 2 1
59 71.93 atmosphere 1005.0 30 > th dose independent rect. 2 1
97 72.08 wind 9.0 30 < th dose independent rect. 3 23
99 72.09 wind 1.0 30 > th dose independent rect. 2 1
119 73.27 precipitation 0.1 30 < th dose independent rect. 3 23
120 73.27 precipitation 0.1 30 < th dose dependent rect. 3 23
126 73.55 radiation 1.0 43200 < th dose dependent rect. 3 1
134 73.71 temperature 20.0 10 > th dose dependent rect. 22 1
137 73.72 wind 9.0 1440 < th dose independent rect. 3 1
138 73.72 temperature 10.0 1440 > th dose independent rect. 3 1
141 73.72 temperature 30.0 1440 < th dose independent rect. 3 1
145 73.72 humidity 50.0 1440 > th dose independent rect. 3 1
154 73.72 atmosphere 995.0 1440 > th dose independent rect. 3 1
155 73.72 radiation 1.0 1440 < th dose independent rect. 3 1
175 73.72 temperature 10.0 1440 > th dose independent rect. 4 23
178 73.72 radiation 1.0 1440 < th dose dependent rect. 3 1
203 74.15 temperature 20.0 10 > th dose independent rect. 22 1
206 74.20 atmosphere 1005.0 10 > th dose dependent rect. 22 1
207 74.21 wind 3.0 30 < th dose dependent rect. 22 1
239 74.42 wind 3.0 30 < th dose independent rect. 22 1
245 74.49 humidity 70.0 30 > th dose dependent rect. 22 1
254 74.57 wind 1.0 30 > th dose independent rect. 22 1
255 74.57 precipitation 0.1 30 < th dose independent rect. 22 1
256 74.57 precipitation 0.1 30 < th dose dependent rect. 22 1
257 74.58 humidity 80.0 30 > th dose independent rect. 22 1
258 74.58 atmosphere 1005.0 30 > th dose independent rect. 22 1
262 74.61 humidity 50.0 30 > th dose independent rect. 3 23
263 74.62 wind 7.0 30 < th dose independent rect. 22 1
265 74.62 temperature 10.0 30 > th dose independent rect. 22 1
267 74.62 temperature 30.0 30 < th dose independent rect. 22 1
268 74.62 humidity 50.0 30 > th dose independent rect. 22 1
271 74.62 atmosphere 995.0 30 > th dose independent rect. 22 1
272 74.62 atmosphere 1010.0 30 < th dose independent rect. 22 1
274 74.62 radiation 1.0 30 < th dose independent rect. 22 1
279 74.62 temperature 10.0 30 > th dose independent rect. 23 23
280 74.62 radiation 1.0 30 < th dose dependent rect. 22 1
295 74.76 humidity 90.0 90 < th dose independent rect. 2 1
299 74.80 atmosphere 1015.0 30 < th dose dependent rect. 22 1
300 74.81 wind 9.0 1440 < th dose independent rect. 23 1
301 74.81 temperature 10.0 1440 > th dose independent rect. 23 1
304 74.81 temperature 30.0 1440 < th dose independent rect. 23 1
308 74.81 humidity 50.0 1440 > th dose independent rect. 23 1
318 74.81 atmosphere 995.0 1440 > th dose independent rect. 23 1
319 74.81 radiation 1.0 1440 < th dose independent rect. 23 1
339 74.81 temperature 10.0 1440 > th dose independent rect. 24 23
342 74.81 radiation 1.0 1440 < th dose dependent rect. 23 1
351 74.93 humidity 90.0 30 < th dose independent rect. 22 1
365 75.07 wind 1.0 30 > th dose dependent rect. 22 1
393 75.17 humidity 90.0 30 < th dose dependent rect. 22 1
404 75.34 temperature 30.0 30 < th dose dependent rect. 22 1
419 75.54 atmosphere 995.0 720 > th dose independent rect. 23 16
421 75.60 wind 9.0 30 < th dose independent rect. 23 23
423 75.66 precipitation 0.1 720 < th dose independent rect. 15 8
425 75.66 precipitation 0.1 720 < th dose dependent rect. 15 8
431 75.77 temperature 10.0 720 > th dose independent rect. 15 8
432 75.77 temperature 10.0 720 > th dose independent rect. 23 16
436 75.81 wind 1.0 10 < th dose independent rect. 14 13
439 75.84 wind 1.0 10 < th dose independent rect. 17 10
441 75.85 wind 1.0 10 < th dose independent rect. 21 6
451 75.96 temperature 10.0 720 > th dose independent rect. 3 8
452 75.96 atmosphere 995.0 720 > th dose independent rect. 3 8
454 75.96 temperature 10.0 720 > th dose independent rect. 11 16
459 76.02 atmosphere 1015.0 720 < th dose independent rect. 3 8
460 76.02 precipitation 0.1 720 < th dose independent rect. 11 16
462 76.02 precipitation 0.1 720 < th dose dependent rect. 11 16
464 76.04 wind 9.0 720 < th dose independent rect. 3 8
472 76.14 atmosphere 1015.0 1440 < th dose independent rect. 3 1
473 76.14 radiation 40.0 720 < th dose independent rect. 15 8
491 76.27 temperature 30.0 30 < th dose independent rect. 3 23
503 76.35 humidity 50.0 720 > th dose independent rect. 3 8
531 76.41 atmosphere 995.0 30 > th dose independent rect. 23 23
566 76.55 wind 1.0 10 < th dose independent rect. 8 19
568 76.56 wind 9.0 720 < th dose independent rect. 15 8
573 76.60 wind 1.0 10 > th dose independent rect. 23 8
580 76.68 wind 1.0 10 < th dose independent rect. 15 7
581 76.68 atmosphere 1015.0 30 < th dose independent rect. 3 23
583 76.68 wind 1.0 10 < th dose dependent rect. 14 8
585 76.69 wind 1.0 10 < th dose independent rect. 17 5
647 76.96 radiation 10.0 10 < th dose independent rect. 4 22
650 76.99 precipitation 0.1 720 < th dose independent rect. 3 8
651 76.99 humidity 60.0 90 > th dose independent rect. 14 11
652 76.99 wind 1.0 10 > th dose independent rect. 23 21
654 76.99 temperature 25.0 720 > th dose dependent rect. 3 5
655 76.99 precipitation 0.1 720 < th dose dependent rect. 3 8
658 77.01 atmosphere 995.0 720 > th dose independent rect. 15 8
662 77.03 humidity 60.0 10 > th dose independent rect. 14 12
666 77.05 atmosphere 995.0 720 > th dose independent rect. 11 16
668 77.08 atmosphere 1005.0 30 > th dose dependent rect. 20 3
672 77.11 temperature 30.0 10 < th dose independent rect. 14 12
676 77.16 humidity 50.0 30 > th dose dependent rect. 3 23
685 77.21 atmosphere 995.0 10 > th dose independent rect. 14 12
686 77.21 precipitation 0.1 720 < th dose independent rect. 23 16
687 77.21 precipitation 0.1 720 < th dose dependent rect. 23 16
694 77.24 atmosphere 1005.0 30 > th dose independent rect. 20 3
695 77.24 temperature 25.0 720 > th dose independent rect. 3 5
697 77.25 wind 1.0 10 > th dose independent sin 17 NA
720 77.34 radiation 10.0 10 < th dose dependent rect. 4 22
722 77.35 wind 9.0 720 < th dose independent rect. 11 16
736 77.40 wind 1.0 10 > th dose independent rect. 23 23
737 77.41 atmosphere 995.0 720 > th dose independent rect. 14 1
739 77.41 atmosphere 995.0 720 > th dose independent rect. 3 23
743 77.42 atmosphere 995.0 30 > th dose dependent rect. 3 23
744 77.43 wind 1.0 30 > th dose dependent rect. 2 1
748 77.45 temperature 30.0 10 < th dose independent rect. 16 10
762 77.50 radiation 40.0 30 < th dose independent rect. 14 12
772 77.53 humidity 50.0 10 > th dose independent rect. 2 12
773 77.53 precipitation 0.1 90 < th dose independent rect. 1 22
774 77.53 temperature 20.0 30 > th dose dependent rect. 20 3
775 77.53 precipitation 0.1 90 < th dose dependent rect. 1 22
777 77.54 atmosphere 995.0 1440 > th dose independent rect. 3 12
799 77.60 wind 1.0 720 > th dose independent rect. 15 8
800 77.60 precipitation 0.1 10 < th dose independent rect. 2 12
802 77.60 radiation 30.0 10 < th dose dependent rect. 23 11
803 77.60 precipitation 0.1 10 < th dose dependent rect. 2 12
804 77.61 radiation 10.0 10 < th dose independent rect. 23 11
846 77.63 wind 9.0 30 < th dose dependent rect. 3 23
852 77.65 precipitation 0.1 30 < th dose independent rect. 7 16
854 77.65 precipitation 0.1 30 < th dose dependent rect. 7 16
856 77.66 wind 9.0 10 < th dose independent rect. 14 12
857 77.66 atmosphere 995.0 30 > th dose independent rect. 23 21
873 77.68 temperature 10.0 10 > th dose independent rect. 2 12
875 77.68 temperature 10.0 10 > th dose independent rect. 14 12
876 77.68 atmosphere 995.0 10 > th dose independent rect. 2 12
877 77.68 atmosphere 1015.0 10 < th dose independent rect. 2 12
878 77.68 precipitation 0.1 10 < th dose independent rect. 14 12
879 77.68 wind 9.0 720 < th dose independent rect. 23 16
882 77.68 precipitation 0.1 10 < th dose dependent rect. 14 12
889 77.70 atmosphere 1015.0 90 < th dose independent rect. 1 22
894 77.71 wind 1.0 90 > th dose independent rect. 3 23
898 77.72 radiation 10.0 10 < th dose independent rect. 23 9
911 77.75 wind 1.0 10 > th dose independent rect. 14 12
912 77.75 temperature 10.0 30 > th dose dependent rect. 7 16
924 77.78 temperature 10.0 1440 > th dose independent rect. 24 8
927 77.78 temperature 30.0 1440 < th dose independent rect. 24 8
931 77.78 humidity 50.0 1440 > th dose independent rect. 24 8
936 77.78 atmosphere 995.0 1440 > th dose independent rect. 24 8
942 77.78 temperature 10.0 1440 > th dose independent rect. 8 16
946 77.78 wind 1.0 10 > th dose independent rect. 21 23
952 77.80 radiation 20.0 720 > th dose independent rect. 15 1
966 77.80 wind 5.0 30 < th dose independent rect. 20 3
969 77.80 temperature 10.0 90 > th dose independent rect. 1 22
977 77.80 atmosphere 995.0 30 > th dose dependent rect. 23 3