Os07g0409500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : SKP1 component family protein.
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Os07g0409500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : SKP1 component family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 272.96 | 0.776 | 5.42 | -0.52 | 0.591 | -1.68 | -1.41 | 3.12 | -0.62 | 21.3 | 20.01 | 255 | -- | -- |
| 279.14 | 0.778 | 5.49 | -1.07 | 0.557 | -1.54 | -1.29 | -- | -0.822 | 22.2 | 17.58 | 248 | -- | -- |
| 279.58 | 0.779 | 5.41 | -0.509 | 0.517 | -1.65 | -- | 3.03 | -0.629 | 21.7 | 19.44 | 206 | -- | -- |
| 285.96 | 0.788 | 5.48 | -1.04 | 0.654 | -1.55 | -- | -- | -0.787 | 22.2 | 17.5 | 328 | -- | -- |
| 288.18 | 0.795 | 5.41 | -0.58 | -- | -1.73 | -- | 2.88 | -0.635 | -- | 19 | 59 | -- | -- |
| 316.54 | 0.834 | 5.54 | -1.44 | 0.719 | -- | -1.04 | -- | -1.05 | 0.75 | -- | -- | -- | -- |
| 320.81 | 0.839 | 5.53 | -1.41 | 0.728 | -- | -- | -- | -1.05 | 1.15 | -- | -- | -- | -- |
| 295.19 | 0.8 | 5.46 | -1.02 | -- | -1.77 | -- | -- | -0.766 | -- | 17.2 | 41 | -- | -- |
| 311.43 | 0.822 | 5.45 | -- | 0.774 | -2.03 | -- | -- | -0.632 | 22 | 16.18 | 443 | -- | -- |
| 353.65 | 0.879 | 5.52 | -1.38 | -- | -- | -- | -- | -1.03 | -- | -- | -- | -- | -- |
| 373.07 | 0.904 | 5.5 | -- | 0.704 | -- | -- | -- | -0.889 | 1.07 | -- | -- | -- | -- |
| 321.06 | 0.835 | 5.43 | -- | -- | -2.06 | -- | -- | -0.617 | -- | 17.1 | 41 | -- | -- |
| 403.9 | 0.938 | 5.49 | -- | -- | -- | -- | -- | -0.879 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 266.61 | temperature | 20 | 270 | > th | dose dependent | rect. | 10 | 22 |
| 5 | 268.49 | temperature | 10 | 270 | > th | dose dependent | rect. | 10 | 22 |
| 8 | 269.40 | temperature | 20 | 30 | > th | dose dependent | rect. | 13 | 14 |
| 12 | 269.84 | temperature | 30 | 90 | < th | dose dependent | rect. | 8 | 17 |
| 21 | 271.15 | temperature | 20 | 270 | > th | dose dependent | rect. | 20 | 22 |
| 22 | 271.26 | temperature | 20 | 90 | > th | dose dependent | rect. | 13 | 18 |
| 25 | 271.46 | temperature | 25 | 270 | < th | dose independent | rect. | 6 | 19 |
| 70 | 273.04 | temperature | 20 | 270 | > th | dose dependent | no | NA | NA |
| 72 | 273.08 | temperature | 25 | 1440 | < th | dose dependent | rect. | 2 | 1 |
| 80 | 273.23 | temperature | 20 | 30 | > th | dose dependent | rect. | 13 | 23 |
| 81 | 273.26 | temperature | 20 | 270 | > th | dose dependent | rect. | 11 | 16 |
| 90 | 273.45 | temperature | 10 | 90 | > th | dose dependent | rect. | 1 | 17 |
| 92 | 273.48 | temperature | 20 | 270 | > th | dose dependent | rect. | 4 | 23 |
| 120 | 274.32 | temperature | 15 | 1440 | > th | dose dependent | rect. | 2 | 1 |
| 152 | 274.90 | temperature | 20 | 270 | > th | dose dependent | rect. | 1 | 23 |
| 173 | 275.19 | temperature | 30 | 270 | < th | dose dependent | rect. | 5 | 20 |
| 192 | 275.45 | temperature | 20 | 90 | > th | dose dependent | sin | 17 | NA |
| 200 | 275.58 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 2 |
| 201 | 275.59 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 13 |
| 221 | 275.75 | temperature | 30 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 231 | 275.85 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 7 |
| 234 | 275.87 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 2 |
| 334 | 276.29 | temperature | 20 | 1440 | > th | dose dependent | sin | 10 | NA |
| 337 | 276.32 | radiation | 1 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 345 | 276.35 | temperature | 20 | 1440 | > th | dose dependent | rect. | 4 | 4 |
| 432 | 276.69 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 22 |
| 525 | 277.00 | temperature | 30 | 270 | < th | dose dependent | rect. | 16 | 20 |
| 579 | 277.19 | temperature | 30 | 90 | < th | dose dependent | rect. | 7 | 22 |
| 632 | 277.38 | radiation | 40 | 14400 | < th | dose independent | rect. | 2 | 6 |
| 769 | 277.84 | temperature | 25 | 1440 | > th | dose independent | rect. | 18 | 5 |
| 778 | 277.89 | temperature | 30 | 1440 | < th | dose dependent | sin | 9 | NA |
| 784 | 277.93 | radiation | 40 | 14400 | < th | dose independent | rect. | 16 | 16 |
| 839 | 278.09 | temperature | 25 | 1440 | < th | dose independent | rect. | 19 | 4 |
| 909 | 278.29 | temperature | 25 | 1440 | < th | dose independent | rect. | 18 | 6 |