Os02g0101600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : SKP1 component family protein.
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Os02g0101600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : SKP1 component family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 54.05 | 0.345 | 11.7 | 0.664 | 0.484 | -0.736 | -0.17 | -0.778 | 0.0408 | 16.1 | 22.08 | 2122 | -- | -- |
| 55.43 | 0.347 | 11.6 | 0.901 | 0.466 | -0.725 | -0.191 | -- | 0.113 | 16.2 | 22.2 | 2211 | -- | -- |
| 54.12 | 0.343 | 11.7 | 0.661 | 0.483 | -0.736 | -- | -0.78 | 0.0394 | 16 | 22.05 | 2113 | -- | -- |
| 55.5 | 0.347 | 11.6 | 0.909 | 0.471 | -0.712 | -- | -- | 0.105 | 16 | 22.13 | 2204 | -- | -- |
| 65.22 | 0.376 | 11.7 | 0.68 | -- | -0.728 | -- | -0.623 | 0.0422 | -- | 22.2 | 1140 | -- | -- |
| 73.1 | 0.401 | 11.7 | 0.612 | 0.495 | -- | -0.156 | -- | -0.141 | 15.7 | -- | -- | -- | -- |
| 73.16 | 0.401 | 11.7 | 0.61 | 0.493 | -- | -- | -- | -0.142 | 15.6 | -- | -- | -- | -- |
| 66.32 | 0.379 | 11.6 | 0.836 | -- | -0.703 | -- | -- | 0.0844 | -- | 22.2 | 1147 | -- | -- |
| 74.11 | 0.401 | 11.7 | -- | 0.434 | -0.442 | -- | -- | -0.0671 | 15.7 | 22.59 | 2201 | -- | -- |
| 86.68 | 0.435 | 11.7 | 0.589 | -- | -- | -- | -- | -0.155 | -- | -- | -- | -- | -- |
| 82.96 | 0.426 | 11.7 | -- | 0.481 | -- | -- | -- | -0.21 | 15.6 | -- | -- | -- | -- |
| 83.05 | 0.424 | 11.7 | -- | -- | -0.519 | -- | -- | -0.0596 | -- | 22.31 | 1043 | -- | -- |
| 95.83 | 0.457 | 11.7 | -- | -- | -- | -- | -- | -0.22 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 53.06 | temperature | 10 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 3 | 53.26 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 22 |
| 19 | 54.26 | temperature | 10 | 270 | > th | dose dependent | sin | 8 | NA |
| 21 | 54.39 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 26 | 54.54 | temperature | 25 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 30 | 54.62 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 31 | 54.66 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 5 |
| 36 | 54.76 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 6 |
| 49 | 54.91 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 52 | 54.95 | temperature | 25 | 1440 | < th | dose dependent | rect. | 16 | 10 |
| 53 | 54.96 | temperature | 25 | 4320 | > th | dose independent | rect. | 19 | 6 |
| 59 | 54.99 | temperature | 30 | 270 | < th | dose dependent | rect. | 12 | 23 |
| 78 | 55.07 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 23 |
| 79 | 55.08 | temperature | 25 | 4320 | > th | dose independent | rect. | 20 | 2 |
| 87 | 55.10 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 20 |
| 92 | 55.12 | temperature | 25 | 1440 | < th | dose dependent | sin | 16 | NA |
| 109 | 55.15 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 22 |
| 127 | 55.25 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 138 | 55.28 | temperature | 25 | 1440 | < th | dose dependent | rect. | 11 | 18 |
| 141 | 55.29 | temperature | 15 | 10 | > th | dose dependent | no | NA | NA |
| 168 | 55.36 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 173 | 55.37 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 4 |
| 198 | 55.43 | temperature | 10 | 4320 | > th | dose dependent | rect. | 20 | 5 |
| 200 | 55.43 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 12 |
| 231 | 55.49 | temperature | 30 | 270 | < th | dose dependent | sin | 8 | NA |
| 252 | 55.50 | temperature | 15 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 409 | 55.72 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 436 | 55.76 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 462 | 55.79 | temperature | 10 | 1440 | > th | dose dependent | rect. | 18 | 11 |
| 466 | 55.80 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 530 | 55.84 | temperature | 15 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 533 | 55.85 | temperature | 30 | 4320 | < th | dose dependent | rect. | 23 | 1 |
| 597 | 55.89 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 622 | 55.92 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 12 |
| 646 | 55.93 | temperature | 15 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 659 | 55.94 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 821 | 56.07 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 6 |
| 901 | 56.12 | temperature | 15 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 954 | 56.17 | temperature | 10 | 1440 | > th | dose dependent | sin | 11 | NA |