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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0274700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.6 (0.0314) R2 : 0.221
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.894 (0.0799) R2dC : 0.216 R2C : 0.211
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.142 (0.066) R2dN8 : 0.0102 R2N8 : 0.00536
σ : 0.591
deviance : 159.85
__
_____
C
peak time of C : 20.1
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
146.86 0.569 3.55 0.00967 1.02 -0.38 0.211 0.892 0.346 19.2 25.2 63 -- --
149.29 0.573 3.58 -0.261 0.965 -0.335 0.326 -- 0.268 19.2 25.5 60 -- --
146.98 0.565 3.55 0.00934 1.02 -0.378 -- 0.909 0.347 19.2 25.21 63 -- --
149.57 0.573 3.58 -0.27 0.963 -0.327 -- -- 0.265 19.2 25.43 55 -- --
195.75 0.655 3.56 -0.131 -- -0.19 -- 0.66 0.229 -- 25.21 63 -- --
156.84 0.587 3.61 -0.332 0.893 -- 0.123 -- 0.104 20.1 -- -- -- --
156.88 0.587 3.61 -0.335 0.892 -- -- -- 0.104 20.2 -- -- -- --
196.37 0.653 3.57 -0.259 -- -0.252 -- -- 0.183 -- 23.2 24 -- --
150.31 0.571 3.56 -- 0.985 -0.369 -- -- 0.324 19.2 25.4 12 -- --
200.71 0.662 3.59 -0.342 -- -- -- -- 0.094 -- -- -- -- --
159.85 0.591 3.6 -- 0.894 -- -- -- 0.142 20.1 -- -- -- --
197.72 0.655 3.56 -- -- -0.277 -- -- 0.229 -- 23.26 21 -- --
203.81 0.666 3.58 -- -- -- -- -- 0.132 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 141.94 radiation 10.0 10 < th dose dependent rect. 21 23
3 142.70 temperature 25.0 10 > th dose dependent rect. 20 7
17 143.82 radiation 10.0 10 < th dose dependent rect. 1 19
19 144.22 wind 3.0 270 > th dose independent rect. 20 1
25 144.49 temperature 25.0 90 > th dose independent rect. 19 21
26 144.54 atmosphere 1005.0 270 > th dose independent rect. 20 1
34 144.92 radiation 10.0 43200 < th dose dependent rect. 20 6
36 145.10 atmosphere 1000.0 270 > th dose dependent rect. 19 2
41 145.20 humidity 60.0 14400 > th dose independent rect. 21 1
42 145.20 wind 5.0 90 < th dose independent rect. 11 13
44 145.30 radiation 1.0 90 < th dose independent rect. 24 19
45 145.35 temperature 25.0 90 > th dose independent rect. 19 5
48 145.43 humidity 90.0 270 < th dose independent rect. 20 1
63 145.70 radiation 1.0 270 < th dose dependent rect. 23 19
64 145.71 atmosphere 1000.0 10 > th dose dependent rect. 20 5
69 145.79 atmosphere 995.0 10 > th dose dependent rect. 14 6
78 145.93 wind 7.0 720 > th dose independent rect. 16 3
84 146.01 radiation 1.0 30 > th dose independent rect. 6 10
87 146.03 temperature 10.0 10 > th dose dependent rect. 6 10
92 146.09 radiation 10.0 10 < th dose independent rect. 1 19
93 146.09 radiation 10.0 10 < th dose dependent sin 2 NA
96 146.10 temperature 25.0 90 > th dose independent rect. 19 7
107 146.17 atmosphere 1005.0 270 > th dose independent rect. 17 6
111 146.21 radiation 1.0 270 < th dose independent rect. 21 22
115 146.24 wind 7.0 720 > th dose independent rect. 16 6
117 146.25 temperature 20.0 30 > th dose independent rect. 16 14
124 146.26 radiation 1.0 90 > th dose independent rect. 4 12
135 146.29 radiation 1.0 270 < th dose dependent rect. 22 21
149 146.39 wind 5.0 720 > th dose dependent rect. 17 2
153 146.41 precipitation 0.1 270 < th dose independent rect. 2 23
154 146.41 precipitation 0.1 270 < th dose dependent rect. 2 23
155 146.42 wind 5.0 270 < th dose independent rect. 19 2
163 146.49 wind 1.0 90 > th dose independent rect. 19 6
170 146.53 wind 7.0 720 > th dose independent rect. 16 11
174 146.54 radiation 10.0 10 < th dose independent rect. 21 23
178 146.55 atmosphere 1005.0 30 > th dose independent rect. 20 5
180 146.55 radiation 1.0 270 > th dose independent rect. 17 21
189 146.59 wind 7.0 720 > th dose independent rect. 16 16
194 146.60 wind 5.0 270 < th dose independent rect. 5 18
205 146.65 temperature 25.0 270 > th dose dependent rect. 20 1
208 146.68 temperature 20.0 30 > th dose independent rect. 1 5
210 146.69 temperature 25.0 90 < th dose independent rect. 13 16
215 146.71 atmosphere 995.0 90 > th dose independent rect. 1 18
218 146.72 wind 1.0 270 > th dose dependent rect. 20 1
219 146.73 wind 5.0 90 < th dose independent rect. 19 21
220 146.74 atmosphere 995.0 10 > th dose independent rect. 1 19
226 146.76 atmosphere 995.0 270 > th dose independent rect. 21 22
230 146.77 wind 5.0 10 < th dose independent rect. 6 19
232 146.79 wind 5.0 10 < th dose independent rect. 12 13
248 146.86 atmosphere 995.0 270 > th dose independent rect. 13 15
251 146.87 radiation 20.0 10 < th dose dependent rect. 13 17
255 146.89 temperature 15.0 270 > th dose independent rect. 13 15
258 146.90 wind 5.0 720 > th dose dependent rect. 16 6
264 146.92 temperature 25.0 30 < th dose independent rect. 12 20
288 146.96 radiation 20.0 10 < th dose dependent rect. 7 23
291 146.97 wind 1.0 270 < th dose dependent rect. 17 9
298 146.99 wind 7.0 10 < th dose independent rect. 20 18
308 147.02 humidity 80.0 90 > th dose independent rect. 19 5
312 147.04 atmosphere 995.0 10 > th dose independent rect. 14 6
315 147.05 wind 1.0 270 < th dose dependent rect. 20 6
321 147.07 radiation 1.0 720 < th dose independent rect. 17 1
325 147.09 precipitation 0.1 720 < th dose independent rect. 4 17
328 147.09 precipitation 0.1 720 < th dose dependent rect. 4 17
331 147.10 temperature 20.0 30 > th dose independent rect. 14 16
335 147.11 wind 3.0 90 > th dose independent rect. 14 5
345 147.14 wind 5.0 90 < th dose independent rect. 9 15
346 147.14 atmosphere 1010.0 90 < th dose independent rect. 14 15
348 147.14 precipitation 0.1 270 < th dose independent rect. 17 21
349 147.14 precipitation 0.1 270 < th dose dependent rect. 17 21
352 147.15 radiation 10.0 10 < th dose dependent rect. 3 17
353 147.16 temperature 25.0 30 > th dose independent rect. 6 21
356 147.17 wind 1.0 270 < th dose independent rect. 17 9
361 147.18 precipitation 0.1 4320 < th dose independent rect. 13 5
362 147.18 wind 7.0 10 < th dose independent rect. 20 20
363 147.18 precipitation 0.1 4320 < th dose dependent rect. 13 5
364 147.18 radiation 10.0 30 < th dose dependent rect. 1 10
371 147.21 precipitation 0.1 720 < th dose independent rect. 9 22
372 147.21 temperature 15.0 30 > th dose independent rect. 21 23
373 147.21 precipitation 0.1 720 < th dose dependent rect. 9 22
374 147.22 precipitation 0.1 4320 > th dose independent rect. 13 5
378 147.23 wind 1.0 270 < th dose independent rect. 20 6
388 147.24 temperature 10.0 10 > th dose dependent rect. 6 19
403 147.28 radiation 10.0 10 < th dose independent rect. 13 17
409 147.29 wind 9.0 4320 > th dose dependent rect. 18 1
411 147.30 wind 7.0 10 < th dose independent rect. 6 10
418 147.32 radiation 40.0 30 < th dose dependent rect. 1 10
421 147.33 temperature 30.0 30 < th dose independent rect. 1 19
429 147.35 radiation 10.0 10 < th dose independent rect. 8 22
432 147.36 precipitation 0.1 1440 < th dose independent rect. 21 1
434 147.36 precipitation 0.1 1440 < th dose dependent rect. 21 1
438 147.37 atmosphere 995.0 10 > th dose independent rect. 16 14
443 147.38 wind 5.0 10 < th dose independent rect. 20 5
447 147.39 wind 5.0 90 < th dose independent rect. 19 5
453 147.40 precipitation 0.1 270 < th dose independent rect. 3 10
456 147.40 precipitation 0.1 270 < th dose dependent rect. 3 10
464 147.43 wind 5.0 270 < th dose independent rect. 17 5
468 147.43 wind 1.0 30 > th dose dependent rect. 20 5
469 147.44 atmosphere 1005.0 270 > th dose independent rect. 13 3
470 147.45 precipitation 0.1 270 < th dose independent rect. 19 2
473 147.45 precipitation 0.1 270 < th dose dependent rect. 19 2
481 147.47 humidity 70.0 270 > th dose independent rect. 19 2
514 147.51 wind 5.0 10 < th dose independent sin 17 NA
520 147.51 precipitation 0.1 4320 > th dose dependent rect. 13 5
522 147.51 temperature 10.0 10 > th dose dependent rect. 20 20
523 147.52 radiation 1.0 90 < th dose independent sin 3 NA
527 147.52 wind 9.0 90 < th dose dependent rect. 11 13
532 147.53 atmosphere 1000.0 10 < th dose independent rect. 18 5
542 147.55 temperature 15.0 1440 > th dose independent rect. 21 1
543 147.55 atmosphere 1000.0 10 < th dose independent rect. 20 2
553 147.55 radiation 1.0 720 < th dose dependent rect. 17 1
554 147.55 atmosphere 1000.0 10 < th dose dependent rect. 20 2
559 147.56 atmosphere 1000.0 90 < th dose dependent rect. 20 1
564 147.57 atmosphere 1000.0 90 < th dose independent rect. 20 1
581 147.58 wind 1.0 270 > th dose independent rect. 17 7
591 147.59 radiation 10.0 30 < th dose independent rect. 1 5
594 147.59 temperature 20.0 10 > th dose dependent rect. 20 20
623 147.65 precipitation 0.1 270 < th dose independent rect. 16 23
624 147.65 atmosphere 1000.0 10 < th dose dependent rect. 18 5
626 147.65 temperature 10.0 10 > th dose dependent rect. 6 8
627 147.65 precipitation 0.1 270 < th dose dependent rect. 16 23
631 147.66 temperature 15.0 270 > th dose independent rect. 4 9
639 147.67 wind 5.0 90 < th dose independent sin 18 NA
644 147.68 wind 9.0 10 < th dose independent rect. 20 5
645 147.68 precipitation 0.1 90 < th dose independent rect. 19 5
647 147.68 radiation 10.0 30 < th dose dependent rect. 1 5
648 147.68 precipitation 0.1 90 < th dose dependent rect. 19 5
666 147.71 precipitation 0.1 10 < th dose independent rect. 20 18
668 147.71 wind 7.0 270 < th dose independent rect. 17 21
674 147.71 precipitation 0.1 10 < th dose dependent rect. 20 18
680 147.72 atmosphere 995.0 270 > th dose independent rect. 14 3
681 147.72 temperature 10.0 10 > th dose independent rect. 20 5
682 147.72 temperature 30.0 10 < th dose independent rect. 20 5
683 147.72 humidity 50.0 10 > th dose independent rect. 20 5
687 147.72 radiation 1.0 10 < th dose independent rect. 20 5
694 147.72 temperature 10.0 10 > th dose independent rect. 1 19
696 147.72 atmosphere 1015.0 10 < th dose independent rect. 1 19
698 147.72 radiation 1.0 10 < th dose dependent rect. 20 5
703 147.72 atmosphere 1015.0 30 < th dose dependent rect. 16 14
707 147.73 temperature 25.0 90 > th dose independent rect. 19 12
718 147.75 atmosphere 995.0 10 > th dose independent rect. 16 4
719 147.75 precipitation 0.1 10 < th dose independent rect. 20 5
722 147.75 precipitation 0.1 10 < th dose dependent rect. 20 5
733 147.77 temperature 10.0 1440 > th dose independent rect. 7 10
740 147.77 temperature 10.0 1440 > th dose independent rect. 17 14
744 147.77 radiation 40.0 1440 < th dose independent rect. 17 14
757 147.78 atmosphere 995.0 30 > th dose independent rect. 21 23
764 147.79 wind 1.0 30 > th dose independent rect. 6 19
771 147.80 temperature 15.0 30 > th dose dependent rect. 1 5
800 147.85 temperature 20.0 270 > th dose independent rect. 1 1
803 147.85 wind 7.0 270 < th dose independent rect. 4 9
805 147.85 wind 5.0 10 < th dose independent rect. 9 16
816 147.87 temperature 10.0 90 > th dose independent rect. 19 5
817 147.87 temperature 30.0 90 < th dose independent rect. 19 5
818 147.87 humidity 50.0 90 > th dose independent rect. 19 5
821 147.87 radiation 1.0 90 < th dose independent rect. 19 5
826 147.87 temperature 10.0 90 > th dose independent rect. 24 19
831 147.87 radiation 1.0 90 < th dose dependent rect. 19 5
837 147.87 wind 9.0 10 < th dose dependent rect. 6 19
838 147.87 radiation 20.0 10 < th dose dependent rect. 13 22
843 147.88 atmosphere 1015.0 90 < th dose independent rect. 24 19
848 147.89 atmosphere 995.0 10 > th dose independent rect. 14 16
889 147.92 temperature 15.0 1440 > th dose independent rect. 17 3
901 147.93 wind 9.0 10 < th dose dependent rect. 11 14
926 147.95 precipitation 0.1 720 < th dose independent rect. 11 10
927 147.95 precipitation 0.1 720 < th dose dependent rect. 11 10
944 147.97 precipitation 0.1 10 < th dose independent rect. 20 20
949 147.97 precipitation 0.1 10 < th dose dependent rect. 20 20
974 148.01 temperature 10.0 270 > th dose independent rect. 20 1
975 148.01 temperature 30.0 270 < th dose independent rect. 20 1
979 148.01 atmosphere 995.0 270 > th dose independent rect. 20 1
980 148.01 radiation 1.0 270 < th dose independent rect. 20 1
994 148.01 wind 9.0 90 < th dose independent rect. 24 19
995 148.01 temperature 10.0 270 > th dose independent rect. 21 22
998 148.01 radiation 1.0 270 < th dose dependent rect. 20 1