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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0144900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.85 (0.0169) R2 : 0.0109
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0796 (0.0356) R2dN8 : 0.014 R2N8 : 0.0109
σ : 0.318
deviance : 46.48
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
43.04 0.308 2.87 -0.0867 0.0968 0.778 -0.295 1.98 0.0739 1.2 53.4 78 -- --
43.77 0.31 2.85 -0.0813 0.079 0.616 -0.503 -- 0.0826 0.874 53.4 78 -- --
42.6 0.306 2.86 -0.0717 0.0781 0.989 -- 2.71 0.0769 1.41 53.49 113 -- --
44.81 0.314 2.85 -0.0663 0.0774 0.553 -- -- 0.0833 1.38 53.4 78 -- --
42.55 0.305 2.86 -0.0673 -- 1.04 -- 2.98 0.0764 -- 54.41 113 -- --
45.36 0.316 2.86 -0.11 0.0431 -- -0.427 -- 0.0662 0.964 -- -- -- --
46.12 0.318 2.86 -0.0952 0.0472 -- -- -- 0.0681 2.24 -- -- -- --
45.17 0.314 2.85 -0.0666 -- 0.491 -- -- 0.0832 -- 53.4 78 -- --
44.93 0.314 2.85 -- 0.0774 0.574 -- -- 0.0911 1.33 53.4 78 -- --
46.25 0.318 2.86 -0.0933 -- -- -- -- 0.0693 -- -- -- -- --
46.36 0.318 2.85 -- 0.0453 -- -- -- 0.0787 2.2 -- -- -- --
45.28 0.314 2.85 -- -- 0.512 -- -- 0.091 -- 53.4 78 -- --
46.48 0.318 2.85 -- -- -- -- -- 0.0796 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 40.79 wind 1.0 10 < th dose independent rect. 11 1
3 40.83 atmosphere 1015.0 30 < th dose independent rect. 3 23
5 41.16 atmosphere 1000.0 90 < th dose dependent rect. 10 1
18 41.50 wind 9.0 30 < th dose independent rect. 3 23
19 41.55 atmosphere 1005.0 30 > th dose independent rect. 2 1
20 41.55 atmosphere 1005.0 30 > th dose dependent rect. 2 1
21 41.56 temperature 15.0 30 > th dose independent rect. 3 23
23 41.57 temperature 10.0 30 > th dose dependent rect. 2 1
27 41.58 wind 9.0 30 < th dose independent rect. 2 1
28 41.58 temperature 10.0 30 > th dose independent rect. 2 1
31 41.58 temperature 30.0 30 < th dose independent rect. 2 1
32 41.58 humidity 50.0 30 > th dose independent rect. 2 1
36 41.58 atmosphere 995.0 30 > th dose independent rect. 2 1
38 41.58 atmosphere 1010.0 30 < th dose independent rect. 2 1
40 41.58 radiation 1.0 30 < th dose independent rect. 2 1
45 41.58 precipitation 0.1 30 < th dose independent rect. 2 1
47 41.58 wind 3.0 30 < th dose dependent rect. 2 1
48 41.58 humidity 50.0 30 > th dose dependent rect. 2 1
51 41.58 radiation 1.0 30 < th dose dependent rect. 2 1
56 41.58 precipitation 0.1 30 < th dose dependent rect. 2 1
57 41.59 wind 3.0 30 < th dose independent rect. 2 1
68 41.61 temperature 30.0 30 < th dose dependent rect. 2 1
70 41.63 atmosphere 1015.0 30 < th dose dependent rect. 2 1
72 41.66 wind 1.0 30 > th dose independent rect. 2 1
81 41.71 wind 3.0 10 < th dose dependent rect. 11 2
137 42.26 precipitation 0.1 30 < th dose independent rect. 3 23
138 42.26 precipitation 0.1 30 < th dose dependent rect. 3 23
143 42.34 atmosphere 995.0 30 > th dose independent rect. 3 23
153 42.55 wind 9.0 1440 < th dose independent rect. 3 1
154 42.55 temperature 10.0 1440 > th dose independent rect. 3 1
157 42.55 temperature 30.0 1440 < th dose independent rect. 3 1
161 42.55 humidity 50.0 1440 > th dose independent rect. 3 1
170 42.55 atmosphere 995.0 1440 > th dose independent rect. 3 1
171 42.55 radiation 1.0 1440 < th dose independent rect. 3 1
191 42.55 temperature 10.0 1440 > th dose independent rect. 4 23
194 42.55 radiation 1.0 1440 < th dose dependent rect. 3 1
216 42.58 precipitation 0.1 270 > th dose independent rect. 8 1
217 42.58 precipitation 0.1 270 > th dose dependent rect. 8 1
219 42.60 wind 9.0 30 > th dose independent rect. 21 14
222 42.60 wind 9.0 30 > th dose dependent rect. 21 14
224 42.61 wind 9.0 30 > th dose independent rect. 21 5
245 42.61 wind 9.0 30 > th dose dependent rect. 21 5
344 42.74 humidity 50.0 30 > th dose independent rect. 3 23
397 42.84 atmosphere 1000.0 10 < th dose dependent rect. 3 10
414 42.89 wind 9.0 90 > th dose dependent rect. 18 4
429 42.91 wind 7.0 30 > th dose independent rect. 21 1
436 42.91 wind 7.0 30 > th dose dependent rect. 21 1
535 43.02 atmosphere 1000.0 270 < th dose independent rect. 8 3
546 43.04 wind 9.0 90 > th dose independent rect. 18 4
567 43.08 wind 1.0 30 > th dose dependent rect. 2 1
582 43.10 radiation 40.0 30 < th dose dependent rect. 3 23
620 43.19 radiation 20.0 30 < th dose dependent rect. 3 23
653 43.28 radiation 40.0 30 < th dose independent rect. 3 23
655 43.28 humidity 80.0 270 < th dose dependent rect. 21 1
664 43.30 humidity 90.0 270 < th dose dependent rect. 19 6
669 43.33 humidity 80.0 10 > th dose independent rect. 12 1
678 43.34 humidity 90.0 270 < th dose dependent rect. 20 4
682 43.35 wind 1.0 30 < th dose independent rect. 24 3
699 43.39 atmosphere 1000.0 30 > th dose dependent rect. 20 7
818 43.45 atmosphere 1000.0 720 < th dose independent rect. 1 1
821 43.45 wind 1.0 10 < th dose independent rect. 11 16
827 43.46 humidity 90.0 90 < th dose independent rect. 2 1
835 43.47 wind 9.0 30 < th dose independent sin 10 NA
875 43.49 wind 9.0 30 < th dose dependent rect. 3 23
877 43.50 humidity 80.0 270 < th dose independent rect. 20 2
904 43.53 wind 9.0 720 < th dose independent rect. 7 8
909 43.54 atmosphere 1005.0 30 > th dose independent rect. 20 7
931 43.58 wind 9.0 720 > th dose independent rect. 14 1
932 43.58 temperature 30.0 30 < th dose independent rect. 3 23
939 43.59 humidity 90.0 90 < th dose independent rect. 20 7
942 43.59 humidity 90.0 30 < th dose dependent rect. 20 4
951 43.61 humidity 90.0 30 < th dose independent rect. 20 4
953 43.61 wind 9.0 720 < th dose independent rect. 23 16
958 43.62 atmosphere 1000.0 720 > th dose independent rect. 19 8
959 43.63 wind 9.0 30 > th dose independent sin 10 NA
963 43.63 atmosphere 1000.0 720 < th dose dependent rect. 24 1
964 43.63 atmosphere 1005.0 270 > th dose dependent rect. 23 4
969 43.64 atmosphere 1015.0 270 < th dose independent rect. 12 23
998 43.68 humidity 90.0 270 < th dose independent rect. 23 1