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Os07g0625400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : SKP1 component family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.4 (0.0282) R2 : 0.679
β1 : 3 (0.103) R2dD : 0.615 R2D : 0.522
β2 : 0.692 (0.0732) R2dC : 0.0631 R2C : 0.0546
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.579 (0.0603) R2dN8 : 0.0871 R2N8 : -0.00673
σ : 0.531
deviance : 128.38
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_____
C
peak time of C : 5.03
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
110.56 0.494 7.41 3.01 1.09 -0.493 0.415 -1.8 0.559 3.12 0.4844 97 -- --
115.53 0.504 7.42 2.91 0.971 -0.514 -1.62 -- 0.556 2.26 0.4844 97 -- --
110.78 0.49 7.41 2.99 1.08 -0.481 -- -1.56 0.559 3.14 0.4927 95 -- --
124.75 0.524 7.41 2.97 0.884 -0.396 -- -- 0.568 2.94 0.4844 97 -- --
122.29 0.515 7.41 3.11 -- 0.694 -- -2.09 0.642 -- 23.32 429 -- --
125.39 0.525 7.41 2.98 0.664 -- -1.28 -- 0.572 4.09 -- -- -- --
128.38 0.531 7.4 3 0.692 -- -- -- 0.579 5.03 -- -- -- --
125.93 0.523 7.4 3.06 -- 0.828 -- -- 0.601 -- 0.02 673 -- --
355.36 0.883 7.5 -- 1.15 -0.649 -- -- 0.233 2.19 0.4844 97 -- --
153.51 0.579 7.41 3.02 -- -- -- -- 0.597 -- -- -- -- --
365.16 0.894 7.48 -- 0.745 -- -- -- 0.245 4.89 -- -- -- --
366.57 0.892 7.45 -- -- 0.654 -- -- 0.342 -- 10.03 480 -- --
394.45 0.927 7.49 -- -- -- -- -- 0.261 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 108.29 temperature 10.0 270 > th dose dependent rect. 7 19
2 108.48 humidity 80.0 270 < th dose independent rect. 8 8
5 108.92 temperature 10.0 90 > th dose dependent rect. 9 19
6 108.98 temperature 10.0 10 > th dose dependent rect. 7 10
7 108.99 radiation 10.0 30 < th dose independent rect. 5 21
10 109.07 temperature 20.0 270 > th dose independent rect. 7 10
11 109.13 temperature 10.0 270 > th dose dependent rect. 7 9
15 109.24 temperature 20.0 10 > th dose independent rect. 7 10
18 109.26 humidity 90.0 270 < th dose independent rect. 8 19
23 109.34 atmosphere 1015.0 720 < th dose independent rect. 1 9
28 109.49 temperature 15.0 10 > th dose dependent rect. 9 8
34 109.57 temperature 20.0 90 > th dose independent rect. 9 11
37 109.65 radiation 1.0 90 < th dose independent sin 12 NA
38 109.65 temperature 15.0 10 > th dose dependent rect. 9 11
41 109.67 radiation 1.0 90 < th dose dependent sin 11 NA
49 109.79 temperature 20.0 270 > th dose independent rect. 7 12
52 109.83 radiation 10.0 270 < th dose independent rect. 3 7
54 109.88 temperature 20.0 720 > th dose independent rect. 7 6
63 109.98 temperature 20.0 10 > th dose independent rect. 9 8
73 110.03 temperature 15.0 270 > th dose dependent rect. 7 13
84 110.10 temperature 15.0 90 > th dose dependent rect. 9 14
90 110.15 temperature 15.0 10 > th dose dependent rect. 9 15
93 110.17 temperature 15.0 30 > th dose dependent rect. 7 13
94 110.20 humidity 50.0 720 > th dose independent rect. 16 3
97 110.22 temperature 10.0 720 > th dose dependent rect. 7 6
100 110.24 radiation 10.0 270 > th dose independent rect. 9 22
113 110.31 radiation 30.0 90 < th dose independent rect. 4 8
115 110.31 temperature 10.0 10 > th dose dependent rect. 2 15
117 110.32 radiation 10.0 270 > th dose independent rect. 9 7
143 110.47 humidity 80.0 270 < th dose independent sin 1 NA
148 110.48 radiation 40.0 270 < th dose dependent rect. 3 12
183 110.56 radiation 20.0 270 < th dose dependent rect. 9 22
186 110.57 radiation 1.0 90 < th dose dependent rect. 5 23
189 110.61 humidity 80.0 10 < th dose independent rect. 9 8
192 110.61 atmosphere 1015.0 720 < th dose independent rect. 23 20
194 110.62 atmosphere 1015.0 720 < th dose independent rect. 23 14
197 110.62 temperature 15.0 10 > th dose dependent rect. 9 13
199 110.63 temperature 20.0 10 > th dose independent sin 21 NA
204 110.63 radiation 1.0 30 < th dose dependent rect. 1 23
216 110.68 temperature 10.0 270 > th dose dependent sin 23 NA
228 110.72 radiation 1.0 30 < th dose dependent rect. 21 23
230 110.73 temperature 10.0 10 > th dose dependent sin 22 NA
241 110.76 temperature 10.0 10 > th dose dependent sin 20 NA
243 110.76 temperature 10.0 90 > th dose dependent sin 21 NA
249 110.77 humidity 70.0 270 > th dose dependent rect. 21 20
257 110.79 temperature 20.0 10 > th dose independent rect. 7 13
259 110.79 humidity 80.0 270 < th dose independent rect. 23 17
266 110.81 temperature 20.0 90 > th dose independent sin 22 NA
267 110.81 radiation 40.0 270 < th dose independent rect. 3 13
270 110.81 radiation 40.0 90 < th dose dependent rect. 4 8
289 110.85 temperature 15.0 720 > th dose independent rect. 1 9
315 110.87 humidity 50.0 270 > th dose independent rect. 16 11
329 110.89 radiation 20.0 270 < th dose dependent rect. 3 9
334 110.90 radiation 1.0 90 < th dose dependent rect. 10 20
337 110.91 temperature 20.0 10 > th dose independent rect. 9 13
342 110.92 humidity 70.0 30 > th dose independent rect. 4 8
360 110.95 radiation 1.0 90 < th dose dependent rect. 13 17
373 110.97 radiation 30.0 30 < th dose dependent rect. 11 15
380 110.98 radiation 1.0 90 < th dose dependent rect. 17 14
392 111.01 radiation 10.0 270 > th dose independent sin 0 NA
393 111.01 wind 7.0 720 < th dose independent rect. 23 8
402 111.02 radiation 1.0 90 < th dose dependent rect. 17 23
406 111.03 temperature 15.0 720 > th dose independent rect. 1 12
407 111.03 temperature 15.0 720 > th dose independent rect. 1 18
413 111.04 humidity 70.0 90 > th dose independent rect. 18 11
417 111.05 wind 5.0 270 < th dose independent rect. 3 4
423 111.06 atmosphere 1015.0 720 < th dose independent rect. 3 16
428 111.07 temperature 20.0 90 > th dose independent rect. 9 14
429 111.07 precipitation 0.1 270 < th dose independent rect. 3 14
431 111.07 radiation 1.0 270 < th dose independent rect. 7 20
434 111.07 precipitation 0.1 270 < th dose dependent rect. 3 14
437 111.07 radiation 1.0 270 < th dose dependent rect. 7 20
448 111.10 temperature 15.0 270 > th dose independent rect. 3 14
458 111.12 humidity 90.0 270 < th dose independent sin 22 NA
466 111.13 radiation 1.0 90 < th dose dependent rect. 17 19
468 111.13 humidity 70.0 270 > th dose dependent rect. 8 22
471 111.13 radiation 1.0 90 < th dose dependent rect. 12 23
476 111.14 radiation 1.0 90 < th dose dependent no NA NA
491 111.15 temperature 10.0 720 > th dose dependent rect. 7 4
549 111.22 radiation 1.0 90 < th dose dependent rect. 17 11
556 111.24 radiation 20.0 30 < th dose dependent rect. 5 21
564 111.26 radiation 30.0 270 < th dose dependent rect. 16 11
575 111.28 atmosphere 995.0 270 > th dose independent rect. 3 14
603 111.31 humidity 70.0 270 > th dose independent rect. 10 21
610 111.32 radiation 30.0 90 < th dose independent rect. 4 11
631 111.33 temperature 15.0 720 > th dose independent rect. 4 9
665 111.36 wind 1.0 270 > th dose independent rect. 2 6
679 111.37 wind 7.0 270 < th dose independent rect. 17 10
689 111.39 radiation 1.0 90 < th dose dependent rect. 19 23
708 111.41 humidity 70.0 270 > th dose dependent rect. 2 14
713 111.42 radiation 10.0 270 < th dose independent rect. 17 10
745 111.45 temperature 15.0 270 > th dose independent rect. 17 10
814 111.53 wind 5.0 270 < th dose independent rect. 4 2
833 111.54 atmosphere 1015.0 270 < th dose independent rect. 3 14
845 111.54 humidity 50.0 90 > th dose dependent rect. 4 8
848 111.55 temperature 30.0 90 < th dose independent rect. 18 10
857 111.56 radiation 1.0 720 < th dose dependent rect. 7 13
877 111.59 radiation 10.0 270 < th dose independent rect. 9 22
887 111.60 wind 9.0 270 < th dose independent rect. 3 14
914 111.63 radiation 10.0 270 < th dose independent sin 5 NA
941 111.64 precipitation 0.1 270 < th dose independent rect. 17 10
943 111.64 precipitation 0.1 270 < th dose dependent rect. 17 10
954 111.66 wind 1.0 270 > th dose independent rect. 3 4
972 111.69 radiation 10.0 270 > th dose independent no NA NA