BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0625400 Os07g0625400|AK073278
(182 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0625400 SKP1 component family protein 263 6e-71
Os07g0145300 93 1e-19
Os07g0144800 92 3e-19
Os08g0375700 SKP1 component family protein 90 7e-19
Os08g0375500 86 1e-17
Os07g0624900 84 4e-17
Os07g0144900 83 9e-17
Os09g0274700 82 1e-16
Os07g0625000 81 4e-16
Os11g0456300 Similar to Fimbriata-associated protein (Fragm... 79 2e-15
Os09g0274800 79 2e-15
Os07g0625200 78 3e-15
Os09g0273800 Similar to Fimbriata-associated protein (Fragm... 78 3e-15
Os07g0625500 Similar to Fimbriata-associated protein (Fragm... 78 4e-15
Os09g0274432 77 1e-14
Os06g0113800 Similar to Kinetechore (Skp1p-like) protein-like 71 4e-13
Os10g0438100 Similar to Fimbriata-associated protein (Fragm... 70 7e-13
>Os07g0625400 SKP1 component family protein
Length = 182
Score = 263 bits (672), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 148/182 (81%), Positives = 148/182 (81%)
Query: 1 MATXXXXXXXXXXXXXXTMVPEALEKKVVLXXXXXXXXXXXXXXXXXXXXRISKLVGDMI 60
MAT TMVPEALEKKVVL RISKLVGDMI
Sbjct: 1 MATGNGEAAVVEKEGEGTMVPEALEKKVVLDAAEKEEEEKDSEAEAEAEARISKLVGDMI 60
Query: 61 DNVCADHGIPLPKVDIKTVRKMAEYMNKHFAITNKEELKIWDEGFINELDGDEDKYSLFK 120
DNVCADHGIPLPKVDIKTVRKMAEYMNKHFAITNKEELKIWDEGFINELDGDEDKYSLFK
Sbjct: 61 DNVCADHGIPLPKVDIKTVRKMAEYMNKHFAITNKEELKIWDEGFINELDGDEDKYSLFK 120
Query: 121 IIRASERVGFYGLLDLASDMVARKIKAGKAIDEIRKFLGVEKDFTKEEEEKIRRENAWAF 180
IIRASERVGFYGLLDLASDMVARKIKAGKAIDEIRKFLGVEKDFTKEEEEKIRRENAWAF
Sbjct: 121 IIRASERVGFYGLLDLASDMVARKIKAGKAIDEIRKFLGVEKDFTKEEEEKIRRENAWAF 180
Query: 181 EE 182
EE
Sbjct: 181 EE 182
>Os07g0145300
Length = 164
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 59/133 (44%), Positives = 81/133 (60%), Gaps = 8/133 (6%)
Query: 51 RISKLVGDMIDNVCADHGIPLPKVDIKTVRKMAEYMNKHFAITNKEE--LKIWDEGFINE 108
+S+LV +MI++ C +G+PLP V K + K+ EY KH A +EE LK +D FI
Sbjct: 38 SLSQLVSNMIEDDCTTNGVPLPNVASKVLAKVIEYCIKHAAAGEEEEKDLKSFDAEFI-- 95
Query: 109 LDGDEDKYSLFKIIRASERVGFYGLLDLASDMVARKIKAGKAIDEIRKFLGVEKDFTKEE 168
D DK L+ ++ AS + LLDL A IK GK+ ++IRK G++ DFT EE
Sbjct: 96 ---DVDKNMLYDLLLASNFMNIKSLLDLCCQHTANLIK-GKSPEQIRKEFGIKNDFTPEE 151
Query: 169 EEKIRRENAWAFE 181
EE+IR+EN WAFE
Sbjct: 152 EEEIRKENTWAFE 164
>Os07g0144800
Length = 157
Score = 91.7 bits (226), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 58/133 (43%), Positives = 80/133 (60%), Gaps = 8/133 (6%)
Query: 51 RISKLVGDMIDNVCADHGIPLPKVDIKTVRKMAEYMNKH--FAITNKEELKIWDEGFINE 108
+S+LV +MI+N C +G+PLP V K + K+ EY KH A ++ELK +D F+
Sbjct: 31 SLSQLVSNMIENDCTTNGVPLPNVASKVLAKVIEYCVKHAAAAEDEEKELKSFDAEFM-- 88
Query: 109 LDGDEDKYSLFKIIRASERVGFYGLLDLASDMVARKIKAGKAIDEIRKFLGVEKDFTKEE 168
D DK L+ ++ AS + LLDL A IK GK+ ++IRK G++ DFT EE
Sbjct: 89 --IDVDKNMLYGLLLASNFLNIKSLLDLCCQHTANLIK-GKSPEQIRKEFGIKNDFTPEE 145
Query: 169 EEKIRRENAWAFE 181
EE IR+EN WAFE
Sbjct: 146 EE-IRKENTWAFE 157
>Os08g0375700 SKP1 component family protein
Length = 169
Score = 90.1 bits (222), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 78/143 (54%), Gaps = 20/143 (13%)
Query: 53 SKLVGDMIDNVCADHGIPLPKVDIKTVRKMAEYMNKHFAITNK--------------EEL 98
SK + MI++ C D+G+PLP V + K+ EY KH A+T K EEL
Sbjct: 32 SKTLSHMIEDDCTDNGVPLPNVTAVVLAKVVEYFKKHAAVTPKPATEAVAADKAKREEEL 91
Query: 99 KIWDEGFINELDGDEDKYSLFKIIRASERVGFYGLLDLASDMVARKIKAGKAIDEIRKFL 158
K +D F+ D D+ +F++I A+ + LLDL A IK +++E+R+
Sbjct: 92 KSFDAEFV-----DVDRTMVFELILAANFLNAQDLLDLTCQHAADLIK-DMSVEEVREVF 145
Query: 159 GVEKDFTKEEEEKIRRENAWAFE 181
+ DFT EEE ++R+ENAWAF+
Sbjct: 146 NITNDFTPEEEAEVRKENAWAFD 168
>Os08g0375500
Length = 169
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 78/143 (54%), Gaps = 20/143 (13%)
Query: 53 SKLVGDMIDNVCADHGIPLPKVDIKTVRKMAEYMNKHFAITNK--------------EEL 98
SK + MI++ C D+G+PLP V + K+ EY KH A+T K EEL
Sbjct: 32 SKTLSHMIEDDCTDNGVPLPNVTAVVLVKVVEYFKKHAAVTPKPATEAVVADKAKREEEL 91
Query: 99 KIWDEGFINELDGDEDKYSLFKIIRASERVGFYGLLDLASDMVARKIKAGKAIDEIRKFL 158
K +D F+ D D+ LF++I A+ + LLDL A IK +++E+R+
Sbjct: 92 KSFDAEFV-----DVDRTMLFELILAANFLNAQDLLDLTCQHAADLIK-DMSVEEVREVF 145
Query: 159 GVEKDFTKEEEEKIRRENAWAFE 181
+ DFT EEE ++R+ENAWAF+
Sbjct: 146 NITNDFTPEEEAEVRKENAWAFD 168
>Os07g0624900
Length = 200
Score = 84.3 bits (207), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 62/137 (45%), Positives = 83/137 (60%), Gaps = 10/137 (7%)
Query: 51 RISKLVGDMI----DNVCADHGIPLPKVDIKTVRKMAEYMNKHFAI-TNKEELKIWDEGF 105
R+SK + MI AD IP P +D T+R + +Y +KH A ++E+LK WDE F
Sbjct: 69 RLSKTIAGMILAGGGGGGADQCIPTPDIDHDTLRVVMQYCDKHAADDADEEDLKEWDEDF 128
Query: 106 INELDGDEDKYSLFKIIRASERVGFYGLLDLASDMVARKIKAGKAIDEIRKFLGVEKDFT 165
++ELD D +LF +I A+ + GLLDL VA IK GK +EIRK + D +
Sbjct: 129 VDELDQD----ALFDVIAAANYLDIDGLLDLTCKRVADTIK-GKTPEEIRKEFNIVNDLS 183
Query: 166 KEEEEKIRRENAWAFEE 182
KEEEE+IRREN WAFE+
Sbjct: 184 KEEEEEIRRENPWAFEQ 200
>Os07g0144900
Length = 172
Score = 83.2 bits (204), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 78/141 (55%), Gaps = 16/141 (11%)
Query: 53 SKLVGDMIDNVCADHGIPLPKVDIKTVRKMAEYMNKHF-----------AITNKEELKIW 101
S+L+ +MI++ C ++G+ LP VD + + +Y N H A + +EELK +
Sbjct: 37 SQLISNMIEDDCTENGVRLPNVDGDILTMVVDYCNMHAGDAAAAGDTMKASSTEEELKKF 96
Query: 102 DEGFINELDGDEDKYSLFKIIRASERVGFYGLLDLASDMVARKIKAGKAIDEIRKFLGVE 161
D + L+ LFK+I A+ + LLD+ VA + +GK +++R+ +E
Sbjct: 97 DAELVQALENP----VLFKLILAANFLNIKSLLDMTCQRVA-DMMSGKTPEQMRETFSIE 151
Query: 162 KDFTKEEEEKIRRENAWAFEE 182
DFT EEE IR+ENAWAF++
Sbjct: 152 NDFTPEEEAAIRQENAWAFDD 172
>Os09g0274700
Length = 165
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/138 (43%), Positives = 77/138 (55%), Gaps = 13/138 (9%)
Query: 51 RISKLVGDMIDNVCADHGIPLPKVDIKTVRKMAEYMNKHFAITNKE-------ELKIWDE 103
+SKLV +MI++ C ++G+PLP V + K+ EY KH A E ELK +D
Sbjct: 33 SMSKLVSNMIEDGCTENGVPLPNVASNVLAKVLEYCKKHAAAAAAEDVAVKDQELKSFDA 92
Query: 104 GFINELDGDEDKYSLFKIIRASERVGFYGLLDLASDMVARKIKAGKAIDEIRKFLGVEKD 163
FI D D LF +I A+ + LLDLA A IK GK + EIR G+ D
Sbjct: 93 SFI-----DVDNTMLFNLILAANYLNVPSLLDLACQHTADLIK-GKTVQEIRDMFGIVND 146
Query: 164 FTKEEEEKIRRENAWAFE 181
FT EEEE+IR+EN WAFE
Sbjct: 147 FTPEEEEEIRKENEWAFE 164
>Os07g0625000
Length = 724
Score = 81.3 bits (199), Expect = 4e-16, Method: Composition-based stats.
Identities = 51/111 (45%), Positives = 66/111 (59%), Gaps = 7/111 (6%)
Query: 51 RISKLVGDMIDNVCADHGIPLPKVDIKTVRKMAEYMNKHF-----AITNKEELKIWDEGF 105
RISK++GD ID IPLP VD KT++K+ EY ++H KEELK WD+ F
Sbjct: 127 RISKVIGDKIDAGRGGEAIPLPHVDKKTLKKVIEYCDEHANENSDTDEQKEELKNWDKAF 186
Query: 106 INELDGDEDKYSLFKIIRASERVGFYGLLDLASDMVARKIKAGKAIDEIRK 156
I+ELD D+ + LF ++ AS + GLLDL VA KA K +EIRK
Sbjct: 187 IDELDEDDGSF-LFLVLLASSYLKIDGLLDLTYQRVADNSKA-KTTEEIRK 235
>Os11g0456300 Similar to Fimbriata-associated protein (Fragment)
Length = 173
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/150 (40%), Positives = 81/150 (54%), Gaps = 27/150 (18%)
Query: 53 SKLVGDMIDNVCADHGIPLPKVDIKTVRKMAEYMNKHF---------------------A 91
S+ + MI++ CAD+GIPLP V+ K + K+ EY NKH
Sbjct: 30 SQTIRHMIEDDCADNGIPLPNVNSKILSKVIEYCNKHVHAAAAAASKAADDAASAAAAVP 89
Query: 92 ITNKEELKIWDEGFINELDGDEDKYSLFKIIRASERVGFYGLLDLASDMVARKIKAGKAI 151
+ E+LK WD F+ D+ +LF +I A+ + GLLDL VA IK GK
Sbjct: 90 PPSGEDLKNWDADFVKV-----DQATLFDLILAANYLNIKGLLDLTCQTVADMIK-GKTP 143
Query: 152 DEIRKFLGVEKDFTKEEEEKIRRENAWAFE 181
+EIRK ++ DFT EEEE+IRREN WAFE
Sbjct: 144 EEIRKTFNIKNDFTPEEEEEIRRENQWAFE 173
>Os09g0274800
Length = 172
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 77/141 (54%), Gaps = 17/141 (12%)
Query: 52 ISKLVGDMIDNVCADHG-IPLPKVDIKTVRKMAEYMNKHFAI----------TNKEELKI 100
+SK +G+MI++ CA +G IPL V + K+ EY NKH A + +EEL
Sbjct: 37 LSKTLGNMIEDDCATNGAIPLANVASDILAKVVEYCNKHAAATATATAAAKASGEEELSK 96
Query: 101 WDEGFINELDGDEDKYSLFKIIRASERVGFYGLLDLASDMVARKIKAGKAIDEIRKFLGV 160
+D F++ D+ LF +I A+ + LL+L A IK +++R+ G+
Sbjct: 97 FDAEFVSV-----DRKKLFGLINAANFLNMPCLLELTCQRAADLIK-DMMPEQVREVFGI 150
Query: 161 EKDFTKEEEEKIRRENAWAFE 181
E DFT EEE ++R ENAWA+E
Sbjct: 151 ENDFTPEEEAEVRNENAWAYE 171
>Os07g0625200
Length = 221
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/105 (43%), Positives = 63/105 (60%), Gaps = 7/105 (6%)
Query: 51 RISKLVGDMIDNVCADHGIPLPKVDIKTVRKMAEYMNKHF-----AITNKEELKIWDEGF 105
R+SK +G++ID+ D IPLP V KT++K+ EY +KH KEELK WD+ F
Sbjct: 119 RLSKTIGNIIDDGRGDEAIPLPDVSYKTLKKVVEYCDKHADEKSDTDEQKEELKNWDKAF 178
Query: 106 INELDGDEDKYSLFKIIRASERVGFYGLLDLASDMVARKIKAGKA 150
I+EL D+D SL K+I AS + GL +LAS + + GKA
Sbjct: 179 IDELAEDDD--SLVKVIMASNYLKIDGLHNLASQCKTTREQIGKA 221
>Os09g0273800 Similar to Fimbriata-associated protein (Fragment)
Length = 167
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 57/140 (40%), Positives = 76/140 (54%), Gaps = 15/140 (10%)
Query: 51 RISKLVGDMIDNVCADHGIPLPKVDIKTVRKMAEYMNKHF---------AITNKEELKIW 101
+SKLV +MI++ C ++G+PLP V + K+ +Y KH +ELK +
Sbjct: 33 SMSKLVSNMIEDDCTENGVPLPNVASNVLAKVLDYCKKHAAAAAAAAEDVAVKDQELKSF 92
Query: 102 DEGFINELDGDEDKYSLFKIIRASERVGFYGLLDLASDMVARKIKAGKAIDEIRKFLGVE 161
D FI D D LF +I A+ + LLDLA A IK GK + EIR G+
Sbjct: 93 DASFI-----DVDNTMLFGLILAANYLNVPSLLDLACQHTADLIK-GKTVQEIRDTFGIV 146
Query: 162 KDFTKEEEEKIRRENAWAFE 181
DFT EEEE+IR+EN WAFE
Sbjct: 147 NDFTPEEEEEIRKENEWAFE 166
>Os07g0625500 Similar to Fimbriata-associated protein (Fragment)
Length = 174
Score = 77.8 bits (190), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 73/135 (54%), Gaps = 9/135 (6%)
Query: 51 RISKLVGDMIDNV-CADHGIPLPKVDIKTVRKMAEYMNKH-----FAITNKEELKIWDEG 104
R S + M+D+ C D G PLP VD KT+ ++ +Y ++H + + L +D
Sbjct: 43 RQSATIRSMVDDGGCVDKGFPLPNVDSKTLARVIQYCDEHGNKEPHTVDERAALAKFDRD 102
Query: 105 FINELDGDEDKYSLFKIIRASERVGFYGLLDLASDMVARKIKAGKAIDEIRKFLGVEKDF 164
FI ELD DK L+ + A+ + GLL L + VA IK GK +EIR G+E D
Sbjct: 103 FIAELDA--DKAFLYDVTMAANYLHIQGLLALTTQCVADTIK-GKTPEEIRTAFGIEYDL 159
Query: 165 TKEEEEKIRRENAWA 179
T ++E++I+ E+ A
Sbjct: 160 TAQDEKEIKEEDTHA 174
>Os09g0274432
Length = 167
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 77/136 (56%), Gaps = 12/136 (8%)
Query: 52 ISKLVGDMIDNVCADHG-IPLPKVDIKTVRKMAEYMNKHFAI----TNKEEL-KIWDEGF 105
+SK +G+MI++ CA +G IPL V + + EY N+H A + +EEL + +D F
Sbjct: 37 LSKTLGNMIEDDCATNGAIPLANVAADILAMVVEYCNRHAAAAANASGQEELIRKFDAEF 96
Query: 106 INELDGDEDKYSLFKIIRASERVGFYGLLDLASDMVARKIKAGKAIDEIRKFLGVEKDFT 165
+N D+ LF +I A+ + LL+L A IK +++R+ G+E DFT
Sbjct: 97 VNI-----DRKKLFGLINAANFLNMPCLLELTCQRTADLIK-DMMPEQVREVFGIENDFT 150
Query: 166 KEEEEKIRRENAWAFE 181
EEE ++R ENAWA+E
Sbjct: 151 PEEEAEVRNENAWAYE 166
>Os06g0113800 Similar to Kinetechore (Skp1p-like) protein-like
Length = 166
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 54/142 (38%), Positives = 78/142 (54%), Gaps = 20/142 (14%)
Query: 52 ISKLVGDMIDNVC---ADHGIPLPKVDIKTVRKMAEYMNKHFAITN----------KEEL 98
+S+++ MI++ C GI LP V + K+ EY KH AI KEEL
Sbjct: 32 MSRILLHMIEDGCTGDGGAGITLPNVAGSALAKVIEYCTKH-AIAAAEGSSSSRKAKEEL 90
Query: 99 KIWDEGFINELDGDEDKYSLFKIIRASERVGFYGLLDLASDMVARKIKAGKAIDEIRKFL 158
K +D F+ E+ D L+ +I A+ +G GLL LA+ A IK GK+ ++IR+
Sbjct: 91 KKFDVEFM-EVGID----MLYDLIMAANFMGVEGLLSLAAQRTAELIK-GKSPEQIREMF 144
Query: 159 GVEKDFTKEEEEKIRRENAWAF 180
G++ D T EEEE+IR+E WAF
Sbjct: 145 GIKNDHTPEEEEQIRKEYEWAF 166
>Os10g0438100 Similar to Fimbriata-associated protein (Fragment)
Length = 220
Score = 70.5 bits (171), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 76/168 (45%), Gaps = 42/168 (25%)
Query: 51 RISKLVGDMIDNVCADHGIPLPKVDIKTVRKMAEYMNKHFAITNKEE------------- 97
R+SK + MI++ CA IP+ V + + EY +H + E
Sbjct: 59 RVSKTLRGMIEDECATGAIPIAGVHSDVLALLVEYCERHAPHYDPEASDRDRYPFPPFPV 118
Query: 98 -----------------------LKIWDEGFINELDGDEDKYSLFKIIRASERVGFYGLL 134
LK +D+ F+ D D +LF+II A+ + LL
Sbjct: 119 ELPPTASSIKPVTFVDPDADPHGLKAFDKKFL-----DVDNSTLFEIIMAANYLNIEELL 173
Query: 135 DLASDMVARKIKAGKAIDEIRKFLGVEKDFTKEEEEKIRRENAWAFEE 182
D A VA K++ GK +EIR +E D+T E+E ++RRENAWAFE+
Sbjct: 174 DDACTAVADKMR-GKKPEEIRDIFEIENDYTPEQEAEVRRENAWAFED 220
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.137 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,612,663
Number of extensions: 164734
Number of successful extensions: 595
Number of sequences better than 1.0e-10: 18
Number of HSP's gapped: 571
Number of HSP's successfully gapped: 18
Length of query: 182
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 87
Effective length of database: 12,075,471
Effective search space: 1050565977
Effective search space used: 1050565977
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 153 (63.5 bits)