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Os07g0625500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Fimbriata-associated protein (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.57 (0.0334) R2 : 0.811
β1 : 4.59 (0.152) R2dD : 0.775 R2D : 0.495
β2 : 1.23 (0.0771) R2dC : 0.103 R2C : 0.0495
β3 : -2.29 (0.204) R2dE : 0.158 R2E : 0.156
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -5.44 (0.714) R2dD*E : 0.121 R2D*E : -0.509
γ1 : 0.864 (0.0675) R2dN8 : 0.104 R2N8 : 0.00383
σ : 0.547
deviance : 137.92
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C
peak time of C : 5.53
E
wheather : radiation
threshold : 0.2318
memory length : 4457
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
138.64 0.553 6.57 4.61 1.2 -2.2 -0.19 -5.29 0.837 5.67 0.6002 4451 -- --
154.65 0.579 6.69 3.96 1.16 -1.5 -0.382 -- 0.716 5.4 1.395 3009 -- --
137.92 0.547 6.57 4.59 1.23 -2.29 -- -5.44 0.864 5.53 0.2318 4457 -- --
153.69 0.577 6.68 3.86 1.17 -1.53 -- -- 0.699 5.93 1.231 2989 -- --
201.51 0.661 6.51 4.38 -- -2.3 -- -5.03 0.928 -- 0.18 18806 -- --
176.82 0.623 6.63 4.18 1.14 -- -0.0575 -- 0.929 6.68 -- -- -- --
176.83 0.623 6.63 4.18 1.14 -- -- -- 0.929 6.69 -- -- -- --
206.1 0.669 6.79 2.59 -- -1.62 -- -- 0.324 -- 0.03901 47520 -- --
200.65 0.66 6.9 -- 1.09 -3.33 -- -- -0.429 6.51 5.095e-05 47520 -- --
244.47 0.731 6.65 4.2 -- -- -- -- 0.952 -- -- -- -- --
636.85 1.18 6.73 -- 1.19 -- -- -- 0.464 6.48 -- -- -- --
267.54 0.762 6.96 -- -- -3.28 -- -- -0.419 -- 0.009367 47520 -- --
710.72 1.24 6.76 -- -- -- -- -- 0.485 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 135.32 radiation 40 43200 < th dose dependent rect. 20 9
3 135.69 temperature 15 14400 > th dose independent rect. 24 1
4 135.78 radiation 1 43200 > th dose dependent rect. 17 1
16 135.93 radiation 1 14400 < th dose dependent rect. 23 6
17 135.94 temperature 20 14400 < th dose dependent rect. 24 1
18 135.95 radiation 1 43200 < th dose dependent rect. 19 10
33 136.04 radiation 40 43200 < th dose dependent rect. 22 7
34 136.06 temperature 20 14400 < th dose dependent rect. 23 3
57 136.57 temperature 15 14400 < th dose independent rect. 24 3
60 136.64 temperature 15 14400 > th dose independent rect. 22 3
61 136.64 temperature 15 14400 < th dose independent rect. 22 5
64 136.71 temperature 15 14400 > th dose independent rect. 21 6
73 136.81 temperature 15 14400 > th dose independent rect. 2 1
88 136.85 radiation 40 43200 < th dose dependent rect. 17 13
92 136.90 radiation 20 43200 < th dose dependent rect. 17 1
99 136.99 temperature 15 14400 < th dose independent rect. 2 1
105 137.10 temperature 20 14400 < th dose dependent rect. 19 9
109 137.13 temperature 15 14400 < th dose independent rect. 24 1
129 137.17 temperature 20 14400 < th dose dependent rect. 22 17
132 137.20 humidity 90 43200 > th dose independent rect. 23 2
143 137.25 temperature 20 14400 < th dose dependent rect. 11 17
146 137.26 temperature 15 14400 > th dose independent rect. 24 3
163 137.36 temperature 20 14400 < th dose dependent rect. 22 22
170 137.39 temperature 20 14400 < th dose dependent rect. 11 20
172 137.40 temperature 20 14400 < th dose dependent sin 11 NA
175 137.41 temperature 20 14400 < th dose dependent rect. 22 10
204 137.47 temperature 20 14400 < th dose dependent rect. 18 13
250 137.54 radiation 30 43200 < th dose dependent rect. 16 11
261 137.55 radiation 30 43200 < th dose dependent rect. 16 9
290 137.58 temperature 20 14400 < th dose dependent rect. 5 23
372 137.70 temperature 20 14400 < th dose dependent no NA NA
409 137.82 radiation 30 43200 < th dose independent rect. 15 12
420 137.83 radiation 30 43200 < th dose independent rect. 15 10
428 137.84 humidity 60 43200 < th dose dependent rect. 18 17
438 137.87 humidity 80 43200 < th dose independent rect. 15 1
440 137.87 radiation 30 43200 < th dose independent rect. 15 2
445 137.88 radiation 30 43200 < th dose independent rect. 15 6
458 137.94 humidity 90 43200 > th dose dependent rect. 23 3
464 137.97 humidity 90 43200 > th dose dependent rect. 24 1
472 137.99 humidity 90 43200 > th dose dependent rect. 23 7
524 138.18 humidity 90 43200 > th dose dependent rect. 3 3
563 138.29 humidity 90 43200 < th dose independent rect. 23 2
592 138.36 radiation 10 43200 < th dose dependent sin 13 NA
605 138.39 radiation 30 43200 < th dose dependent rect. 2 3
652 138.48 humidity 80 43200 > th dose independent rect. 13 2
656 138.49 humidity 90 14400 > th dose independent rect. 5 1
669 138.55 humidity 90 43200 > th dose dependent rect. 3 1
689 138.62 humidity 90 43200 > th dose independent rect. 20 6
691 138.62 humidity 60 43200 < th dose dependent rect. 10 1
697 138.64 temperature 15 14400 < th dose independent rect. 21 16
704 138.66 humidity 70 43200 < th dose independent rect. 20 13
729 138.69 wind 1 43200 < th dose dependent rect. 22 5
731 138.70 radiation 1 14400 > th dose independent rect. 9 1
761 138.75 humidity 60 43200 < th dose dependent rect. 24 11
812 138.88 humidity 90 14400 < th dose independent rect. 4 2
825 138.90 humidity 90 43200 > th dose dependent sin 11 NA
838 138.92 humidity 70 43200 > th dose dependent rect. 14 1
887 139.03 humidity 60 43200 < th dose dependent sin 9 NA
930 139.12 wind 1 43200 < th dose dependent rect. 20 1
932 139.13 radiation 1 14400 < th dose independent rect. 9 1
960 139.16 temperature 20 14400 < th dose dependent rect. 5 3